miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40287_bna-MIR171c:mirbase
          Length = 88

 Score =  174 bits (88), Expect = 7e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcgagatattagtgcggttcaatcaaatagtcgtactcttagctattagagatcggtttt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcgagatattagtgcggttcaatcaaatagtcgtactcttagctattagagatcggtttt 60

                                      
Query: 61 gttcgattgagccgtgccaatatcacgc 88
          ||||||||||||||||||||||||||||
Sbjct: 61 gttcgattgagccgtgccaatatcacgc 88




>39850_aly-MIR171b:mirbase
          Length = 137

 Score =  127 bits (64), Expect = 1e-30
 Identities = 82/88 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcgagatattagtgcggttcaatcaaatagtcgtactcttagctattagagatcggtttt 60
           |||||||||||||||||||||||||||||||||| |||||| ||  | ||||||||| ||
Sbjct: 23  gcgagatattagtgcggttcaatcaaatagtcgtcctcttaactcatggagatcggtgtt 82

                                       
Query: 61  gttcgattgagccgtgccaatatcacgc 88
           ||||||||||||||||||||||||||||
Sbjct: 83  gttcgattgagccgtgccaatatcacgc 110




>40321_bra-MIR171d:mirbase
          Length = 101

 Score =  119 bits (60), Expect = 3e-28
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcgagatattagtgcggttcaatcaaatagtcgtactcttagctattagagatcggtttt 60
          ||||||||||||||||||||||||||||||||||  ||| |  |  ||||||||||||||
Sbjct: 7  gcgagatattagtgcggttcaatcaaatagtcgtgttctcacttgatagagatcggtttt 66

                                      
Query: 61 gttcgattgagccgtgccaatatcacgc 88
          ||||||||||||||||||||||||||||
Sbjct: 67 gttcgattgagccgtgccaatatcacgc 94




>40319_bra-MIR171b:mirbase
          Length = 104

 Score =  119 bits (60), Expect = 3e-28
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcgagatattagtgcggttcaatcaaatagtcgtactcttagctattagagatcggtttt 60
          ||||||||||||||||||||||||||||||||  |||||||| |  ||||||| | ||||
Sbjct: 8  gcgagatattagtgcggttcaatcaaatagtctcactcttagttgatagagattgatttt 67

                                      
Query: 61 gttcgattgagccgtgccaatatcacgc 88
          ||||||||||||||||||||||||||||
Sbjct: 68 gttcgattgagccgtgccaatatcacgc 95




>40286_bna-MIR171b:mirbase
          Length = 101

 Score =  119 bits (60), Expect = 3e-28
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcgagatattagtgcggttcaatcaaatagtcgtactcttagctattagagatcggtttt 60
          ||||||||||||||||||||||||||||||||||  ||| |  |  ||||||||||||||
Sbjct: 7  gcgagatattagtgcggttcaatcaaatagtcgtgttctcacttgatagagatcggtttt 66

                                      
Query: 61 gttcgattgagccgtgccaatatcacgc 88
          ||||||||||||||||||||||||||||
Sbjct: 67 gttcgattgagccgtgccaatatcacgc 94




>40285_bna-MIR171a:mirbase
          Length = 104

 Score =  119 bits (60), Expect = 3e-28
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcgagatattagtgcggttcaatcaaatagtcgtactcttagctattagagatcggtttt 60
          ||||||||||||||||||||||||||||||||  |||||||| |  ||||||| | ||||
Sbjct: 8  gcgagatattagtgcggttcaatcaaatagtctcactcttagttgatagagattgatttt 67

                                      
Query: 61 gttcgattgagccgtgccaatatcacgc 88
          ||||||||||||||||||||||||||||
Sbjct: 68 gttcgattgagccgtgccaatatcacgc 95




>40061_ath-MIR171b:mirbase
          Length = 117

 Score =  119 bits (60), Expect = 3e-28
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcgagatattagtgcggttcaatcaaatagtcgtactcttagctattagagatcggtttt 60
          |||||||||||||||||||||||||||||||||| |||||| ||  | |||| |||| ||
Sbjct: 12 gcgagatattagtgcggttcaatcaaatagtcgtcctcttaactcatggagaacggtgtt 71

                                      
Query: 61 gttcgattgagccgtgccaatatcacgc 88
          ||||||||||||||||||||||||||||
Sbjct: 72 gttcgattgagccgtgccaatatcacgc 99




>40062_ath-MIR171c:mirbase
          Length = 116

 Score = 61.9 bits (31), Expect = 7e-11
 Identities = 74/87 (85%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   cgagatattagtgcggttcaatcaaatagtcgtactcttagctattagagatcggttttg 61
           ||||||||| |||||||||||||| | |  |||||||||   | ||| ||||||||||  
Sbjct: 26  cgagatattggtgcggttcaatcagaaaaccgtactcttttgttttaaagatcggtttat 85

                                      
Query: 62  ttcgattgagccgtgccaatatcacgc 88
           || ||||||||||||||||||||||||
Sbjct: 86  tt-gattgagccgtgccaatatcacgc 111




>39851_aly-MIR171c:mirbase
          Length = 111

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 73/86 (84%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  cgagatattagtgcggttcaatcaaatagtcgtactcttagctattagagatcggttttg 61
          ||||||||| |||||||||||||| | |   ||||||||   | ||| |||||||||| |
Sbjct: 13 cgagatattggtgcggttcaatcagaaaactgtactcttttgttttaaagatcggttt-g 71

                                    
Query: 62 ttcgattgagccgtgccaatatcacg 87
          || |||||||||||||||||||||||
Sbjct: 72 tttgattgagccgtgccaatatcacg 97




>40318_bra-MIR171a:mirbase
          Length = 85

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 39/41 (95%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                   
Query: 47 tagagatcggttttgttcgattgagccgtgccaatatcacg 87
          ||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 46 tagagatcggttt-gtttgattgagccgtgccaatatcacg 85




>40305_bol-MIR171a:mirbase
          Length = 96

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 39/41 (95%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                   
Query: 47 tagagatcggttttgttcgattgagccgtgccaatatcacg 87
          ||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 52 tagagatcggttt-gtttgattgagccgtgccaatatcacg 91




>40289_bna-MIR171e:mirbase
          Length = 92

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 39/41 (95%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                   
Query: 47 tagagatcggttttgttcgattgagccgtgccaatatcacg 87
          ||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 51 tagagatcggttt-gtttgattgagccgtgccaatatcacg 90




>40288_bna-MIR171d:mirbase
          Length = 96

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 39/41 (95%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                   
Query: 47 tagagatcggttttgttcgattgagccgtgccaatatcacg 87
          ||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 52 tagagatcggttt-gtttgattgagccgtgccaatatcacg 91




>42641_tae-MIR171b:mirbase
          Length = 138

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 62  ttcgattgagccgtgccaatatcacgc 88
           |||||||||||||||||||||||||||
Sbjct: 87  ttcgattgagccgtgccaatatcacgc 113




>41625_vvi-MIR171d:mirbase
          Length = 100

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 59 ttgttcgattgagccgtgccaatatcacg 87
          ||||| |||||||||||||||||||||||
Sbjct: 62 ttgtttgattgagccgtgccaatatcacg 90




>41382_ptc-MIR171b:mirbase
          Length = 103

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 59 ttgttcgattgagccgtgccaatatcacg 87
          ||||| |||||||||||||||||||||||
Sbjct: 66 ttgtttgattgagccgtgccaatatcacg 94



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 2  cgagatattagtgcggttcaatcaaatagt 31
          ||||||||| |||||||||||||| |||||
Sbjct: 11 cgagatattggtgcggttcaatcagatagt 40




>41381_ptc-MIR171a:mirbase
          Length = 104

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 59 ttgttcgattgagccgtgccaatatcacg 87
          ||||| |||||||||||||||||||||||
Sbjct: 67 ttgtttgattgagccgtgccaatatcacg 95




>40360_rco-MIR171b:mirbase
          Length = 91

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 59 ttgttcgattgagccgtgccaatatcacg 87
          ||||| |||||||||||||||||||||||
Sbjct: 58 ttgtttgattgagccgtgccaatatcacg 86



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 2  cgagatattagtgcggttcaatca 25
          ||||||||| ||||||||||||||
Sbjct: 4  cgagatattggtgcggttcaatca 27




>42770_zma-MIR171j:mirbase
          Length = 129

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 65  gattgagccgtgccaatatcacg 87
           |||||||||||||||||||||||
Sbjct: 91  gattgagccgtgccaatatcacg 113




>42762_zma-MIR171b:mirbase
          Length = 85

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 gattgagccgtgccaatatcacg 87
          |||||||||||||||||||||||
Sbjct: 63 gattgagccgtgccaatatcacg 85




>42556_sbi-MIR171k:mirbase
          Length = 87

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 gattgagccgtgccaatatcacg 87
          |||||||||||||||||||||||
Sbjct: 63 gattgagccgtgccaatatcacg 85




>42547_sbi-MIR171b:mirbase
          Length = 132

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 65  gattgagccgtgccaatatcacg 87
           |||||||||||||||||||||||
Sbjct: 94  gattgagccgtgccaatatcacg 116




>42546_sbi-MIR171a:mirbase
          Length = 161

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 60  tgttcgattgagccgtgccaatatcac 86
           |||| ||||||||||||||||||||||
Sbjct: 118 tgtttgattgagccgtgccaatatcac 144




>41983_osa-MIR171c:mirbase
          Length = 99

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 gattgagccgtgccaatatcacg 87
          |||||||||||||||||||||||
Sbjct: 70 gattgagccgtgccaatatcacg 92




>41982_osa-MIR171b:mirbase
          Length = 100

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 gattgagccgtgccaatatcacg 87
          |||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93




>41624_vvi-MIR171c:mirbase
          Length = 103

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 gattgagccgtgccaatatcacg 87
          |||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93




>41216_crt-MIR171:mirbase
          Length = 201

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 65  gattgagccgtgccaatatcacg 87
           |||||||||||||||||||||||
Sbjct: 162 gattgagccgtgccaatatcacg 184




>41121_tcc-MIR171f:mirbase
          Length = 117

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 65  gattgagccgtgccaatatcacg 87
           |||||||||||||||||||||||
Sbjct: 78  gattgagccgtgccaatatcacg 100




>41119_tcc-MIR171d:mirbase
          Length = 117

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 65  gattgagccgtgccaatatcacg 87
           |||||||||||||||||||||||
Sbjct: 78  gattgagccgtgccaatatcacg 100




>40700_mtr-MIR171f:mirbase
          Length = 95

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 gattgagccgtgccaatatcacg 87
          |||||||||||||||||||||||
Sbjct: 68 gattgagccgtgccaatatcacg 90




>40359_rco-MIR171a:mirbase
          Length = 92

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 65 gattgagccgtgccaatatcacg 87
          |||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcacg 87




>42769_zma-MIR171i:mirbase
          Length = 104

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 gattgagccgtgccaatatcac 86
          ||||||||||||||||||||||
Sbjct: 66 gattgagccgtgccaatatcac 87




>42766_zma-MIR171f:mirbase
          Length = 155

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 65  gattgagccgtgccaatatcac 86
           ||||||||||||||||||||||
Sbjct: 116 gattgagccgtgccaatatcac 137




>41986_osa-MIR171f:mirbase
          Length = 127

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 65  gattgagccgtgccaatatcac 86
           ||||||||||||||||||||||
Sbjct: 98  gattgagccgtgccaatatcac 119




>41766_bdi-MIR171c:mirbase
          Length = 86

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 gattgagccgtgccaatatcac 86
          ||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcac 86




>41539_sly-MIR171b:mirbase
          Length = 86

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 66 attgagccgtgccaatatcacg 87
          ||||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcacg 85




>41388_ptc-MIR171h:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 gattgagccgtgccaatatcac 86
          ||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcac 93




>41387_ptc-MIR171g:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 gattgagccgtgccaatatcac 86
          ||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcac 93




>41182_aqc-MIR171f:mirbase
          Length = 88

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 2  cgagatattagtgcggttcaat 23
          ||||||||||||||||||||||
Sbjct: 2  cgagatattagtgcggttcaat 23



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 66 attgagccgtgccaatatcacg 87
          ||||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcacg 85




>41181_aqc-MIR171e:mirbase
          Length = 102

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                    
Query: 59 ttgttcgattgagccgtgccaatatc 84
          ||||| ||||||||||||||||||||
Sbjct: 26 ttgtttgattgagccgtgccaatatc 1




>41178_aqc-MIR171b:mirbase
          Length = 77

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 gattgagccgtgccaatatcac 86
          ||||||||||||||||||||||
Sbjct: 56 gattgagccgtgccaatatcac 77




>41177_aqc-MIR171a:mirbase
          Length = 102

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 59  ttgttcgattgagccgtgccaatatc 84
           ||||| ||||||||||||||||||||
Sbjct: 75  ttgtttgattgagccgtgccaatatc 100




>41122_tcc-MIR171g:mirbase
          Length = 115

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 gattgagccgtgccaatatcac 86
          ||||||||||||||||||||||
Sbjct: 76 gattgagccgtgccaatatcac 97




>40457_gma-MIR171c:mirbase
          Length = 104

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 gattgagccgtgccaatatcac 86
          ||||||||||||||||||||||
Sbjct: 73 gattgagccgtgccaatatcac 94




>40454_gma-MIR171a:mirbase
          Length = 102

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 66 attgagccgtgccaatatcacg 87
          ||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacg 91




>39736_smo-MIR171a:mirbase
          Length = 135

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 65  gattgagccgtgccaatatcac 86
           ||||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatcac 124




>41630_vvi-MIR171i:mirbase
          Length = 103

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 gattgagccgtgccaatatca 85
          |||||||||||||||||||||
Sbjct: 70 gattgagccgtgccaatatca 90




>41622_vvi-MIR171a:mirbase
          Length = 99

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 gattgagccgtgccaatatca 85
          |||||||||||||||||||||
Sbjct: 69 gattgagccgtgccaatatca 89




>41179_aqc-MIR171c:mirbase
          Length = 80

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 3  gagatattagtgcggttcaat 23
          |||||||||||||||||||||
Sbjct: 80 gagatattagtgcggttcaat 60




>42765_zma-MIR171e:mirbase
          Length = 126

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gattgagccgtgccaatatc 84
           ||||||||||||||||||||
Sbjct: 88  gattgagccgtgccaatatc 107




>42764_zma-MIR171d:mirbase
          Length = 121

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gattgagccgtgccaatatc 84
           ||||||||||||||||||||
Sbjct: 83  gattgagccgtgccaatatc 102




>42763_zma-MIR171c:mirbase
          Length = 118

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  tgagccgtgccaatatcacg 87
           ||||||||||||||||||||
Sbjct: 83  tgagccgtgccaatatcacg 102




>42640_tae-MIR171a:mirbase
          Length = 130

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  gattgagccgtgccaatatc 84
           ||||||||||||||||||||
Sbjct: 90  gattgagccgtgccaatatc 109




>42554_sbi-MIR171i:mirbase
          Length = 90

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 65 gattgagccgtgccaatatc 84
          ||||||||||||||||||||
Sbjct: 69 gattgagccgtgccaatatc 88