miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40487_gma-MIR1509a:mirbase
          Length = 111

 Score =  216 bits (109), Expect = 3e-57
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatcttcttaatcaaggaaatcacggtcgcgtgtgtgccggaaagaaagtggcctgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   gcatcttcttaatcaaggaaatcacggtcgcgtgtgtgccggaaagaaagtggcctgtga 62

                                                            
Query: 61  tctccggtttctctttctcgaccgtgtttccttggttaacgatatgtgc 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  tctccggtttctctttctcgaccgtgtttccttggttaacgatatgtgc 111




>40488_gma-MIR1509b:mirbase
          Length = 109

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 91/109 (83%), Gaps = 2/109 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatcttcttaatcaaggaaatcacggtcgcgtgtgtgccggaaagaaagtggcctgtga 60
           ||||||| |||||||||||||||||||| | |||||    ||| |||||||||| |  ||
Sbjct: 3   gcatctttttaatcaaggaaatcacggttgagtgtgaa--ggagagaaagtggcttcaga 60

                                                            
Query: 61  tctccggtttctctttctcgaccgtgtttccttggttaacgatatgtgc 109
           | ||||| || || ||||| || |||||||||||||||| |||||||||
Sbjct: 61  tttccgggttttccttctccactgtgtttccttggttaaagatatgtgc 109