miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 97.6 bits (49), Expect = 2e-21
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 22 agtataggtttaggatcaggtaatctgcatcctgaggtttaaaacaataggtttattgtg 81
||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 agtattggttaaggatccggtaatctgcatcctgaggtttaaaacaataaatttattgta 60
Query: 82 tctagtccttaggatgcagattacc 106
||||||||| |||||| |||||||
Sbjct: 61 tctagtcctcgggatgctgattacc 85
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 42 taatctgcatcctgaggtttaaaacaatag 71
||||||||||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaaaacaatag 50
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 42 taatctgcatcctgaggtttaaaacaatag 71
||||||||||||||||||||||||||||||
Sbjct: 98 taatctgcatcctgaggtttaaaacaatag 127
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 33 aggatcaggtaatctgcatcctgaggtttaaa 64
|||||| |||||||||||||||||||||||||
Sbjct: 10 aggatcgggtaatctgcatcctgaggtttaaa 41
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 40 ggtaatctgcatcctgaggtttaaaac 66
|||||||||||||||||||||||||||
Sbjct: 43 ggtaatctgcatcctgaggtttaaaac 69
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 40 ggtaatctgcatcctgaggtttaaaac 66
|||||||||||||||||||||||||||
Sbjct: 18 ggtaatctgcatcctgaggtttaaaac 44
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 33 aggatcaggtaatctgcatcctgaggtttaaaacaata 70
||||| || ||||||||||||||||||||||| |||||
Sbjct: 151 aggattagataatctgcatcctgaggtttaaagcaata 188
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 42 taatctgcatcctgaggtttaaaacaatag 71
||||||||||||||||||||| ||||||||
Sbjct: 20 taatctgcatcctgaggtttagaacaatag 49
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 33 aggatcaggtaatctgcatcctgaggtttaaaacaata 70
||||| || ||||||||||||||||||||| |||||||
Sbjct: 11 aggattagataatctgcatcctgaggtttataacaata 48
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 ggtaatctgcatcctgaggtttaaaa 65
||||||||||||||||||||||||||
Sbjct: 12 ggtaatctgcatcctgaggtttaaaa 37
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 ggtaatctgcatcctgaggtttaaaa 65
||||||||||||||||||||||||||
Sbjct: 18 ggtaatctgcatcctgaggtttaaaa 43
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 42 taatctgcatcctgaggtttaaaacaata 70
|||||||||||||||||||||| ||||||
Sbjct: 20 taatctgcatcctgaggtttaagacaata 48
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 ggtaatctgcatcctgaggtttaaa 64
|||||||||||||||||||||||||
Sbjct: 27 ggtaatctgcatcctgaggtttaaa 51
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 ggtaatctgcatcctgaggtttaaa 64
|||||||||||||||||||||||||
Sbjct: 25 ggtaatctgcatcctgaggtttaaa 49
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 ggtaatctgcatcctgaggtttaaa 64
|||||||||||||||||||||||||
Sbjct: 26 ggtaatctgcatcctgaggtttaaa 50
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 33 aggatcaggtaatctgcatcctgaggtttaaaacaataggtttattgtgtctagtcctta 92
||||| || ||||||||||||||||||||| | ||||| || |||| | || ||||||
Sbjct: 11 aggattagataatctgcatcctgaggtttatagcaatattttagttgtctttaatcctta 70
Query: 93 ggatgcagatta 104
| ||||||||||
Sbjct: 71 gaatgcagatta 82
>40765_mtr-MIR2111h:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 42 taatctgcatcctgaggtttaaaacaat 69
||||||||||||||||||||| ||||||
Sbjct: 20 taatctgcatcctgaggtttagaacaat 47
>41698_vvi-MIR2111:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 aggatcaggtaatctgcatcctgaggt 59
|||||| ||||||||||||||||||||
Sbjct: 14 aggatcgggtaatctgcatcctgaggt 40
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ggtaatctgcatcctgaggttta 62
|||||||||||||||||||||||
Sbjct: 19 ggtaatctgcatcctgaggttta 41
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ggtaatctgcatcctgaggttta 62
|||||||||||||||||||||||
Sbjct: 19 ggtaatctgcatcctgaggttta 41
>40768_mtr-MIR2111k:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 taatctgcatcctgaggtttaaaacaa 68
||||||||||||||||||||| |||||
Sbjct: 20 taatctgcatcctgaggtttagaacaa 46
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 taatctgcatcctgaggtttaaaacaa 68
||||||||||||||||||||| |||||
Sbjct: 20 taatctgcatcctgaggtttagaacaa 46
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 33 aggatcaggtaatctgcatcctgaggttta 62
||||| || |||||||||||||||||||||
Sbjct: 345 aggattagataatctgcatcctgaggttta 374
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 33 aggatcaggtaatctgcatcctgaggttta 62
||||| || |||||||||||||||||||||
Sbjct: 131 aggattagataatctgcatcctgaggttta 160
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 33 aggatcaggtaatctgcatcctgaggttta 62
||||| || |||||||||||||||||||||
Sbjct: 131 aggattagataatctgcatcctgaggttta 160
>40772_mtr-MIR2111o:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 taatctgcatcctgaggttta 62
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>40761_mtr-MIR2111d:mirbase
Length = 152
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 taatctgcatcctgaggttta 62
|||||||||||||||||||||
Sbjct: 113 taatctgcatcctgaggttta 133
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 taatctgcatcctgaggttta 62
|||||||||||||||||||||
Sbjct: 289 taatctgcatcctgaggttta 309
