miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41122_tcc-MIR171g:mirbase
Length = 115
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 61 tgagttctttagtctgattgagtcgtgccaatatca 96
||||| |||||||||||||||| |||||||||||||
Sbjct: 61 tgagtcctttagtctgattgagccgtgccaatatca 96
>40361_rco-MIR171c:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 61 tgagttctttagtctgattgagtcgtgccaatatc 95
||||||||||| |||||||||| ||||||||||||
Sbjct: 48 tgagttctttaatctgattgagccgtgccaatatc 82
>41622_vvi-MIR171a:mirbase
Length = 99
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 60 ttgagttctttagtctgattgagtcgtgccaatatcat 97
|||||| ||||| |||||||||| ||||||||||||||
Sbjct: 53 ttgagtcctttaatctgattgagccgtgccaatatcat 90
>41630_vvi-MIR171i:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ctttagtctgattgagtcgtgccaatatcat 97
||||| |||||||||| ||||||||||||||
Sbjct: 61 ctttaatctgattgagccgtgccaatatcat 91
>41178_aqc-MIR171b:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 6e-06
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 34 ctcaatcaaatcaaagttcttgaaatttgagttctttagtctgattgagtcgtgccaata 93
||||||||||| |||| ||| || ||| || ||||| |||||||||| ||||||||||
Sbjct: 14 ctcaatcaaatgaaagctctcaaagattgggtcctttaatctgattgagccgtgccaata 73
Query: 94 tca 96
|||
Sbjct: 74 tca 76
>41986_osa-MIR171f:mirbase
Length = 127
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 72 gtctgattgagtcgtgccaatatca 96
||||||||||| |||||||||||||
Sbjct: 94 gtctgattgagccgtgccaatatca 118
>41388_ptc-MIR171h:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 68 tttagtctgattgagtcgtgccaatatca 96
|||| |||||||||| |||||||||||||
Sbjct: 64 tttaatctgattgagccgtgccaatatca 92
>41387_ptc-MIR171g:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 68 tttagtctgattgagtcgtgccaatatca 96
|||| |||||||||| |||||||||||||
Sbjct: 64 tttaatctgattgagccgtgccaatatca 92
>40363_rco-MIR171e:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 67 ctttagtctgattgagtcgtgccaatatc 95
||||| |||||||||| ||||||||||||
Sbjct: 51 ctttaatctgattgagccgtgccaatatc 79
>42770_zma-MIR171j:mirbase
Length = 129
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 73 tctgattgagtcgtgccaatatca 96
|||||||||| |||||||||||||
Sbjct: 88 tctgattgagccgtgccaatatca 111
>42547_sbi-MIR171b:mirbase
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 73 tctgattgagtcgtgccaatatca 96
|||||||||| |||||||||||||
Sbjct: 91 tctgattgagccgtgccaatatca 114
>41385_ptc-MIR171e:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 64 gttctttagtctgattgagtcgtgccaatatc 95
||||||| |||||||||| ||||||||||||
Sbjct: 54 gttctttcatctgattgagccgtgccaatatc 85
>41123_tcc-MIR171h:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 gtctgattgagtcgtgccaatatc 95
||||||||||| ||||||||||||
Sbjct: 92 gtctgattgagccgtgccaatatc 115
