miRNEST 2.0, an integrative microRNA resource :: BLAST
>40468_gma-MIR390a:mirbase
Length = 105
Score = 75.8 bits (38), Expect = 5e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 63 ttgatcttctcttgcgctatccatcctgagtttcatgg 100
||||||||||||||||||||||||||||||||||||||
Sbjct: 54 ttgatcttctcttgcgctatccatcctgagtttcatgg 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 6 ctgtaaagctcaggagggatagcgccat 33
>40467_gma-MIR390a:mirbase
Length = 105
Score = 75.8 bits (38), Expect = 5e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 63 ttgatcttctcttgcgctatccatcctgagtttcatgg 100
||||||||||||||||||||||||||||||||||||||
Sbjct: 54 ttgatcttctcttgcgctatccatcctgagtttcatgg 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 6 ctgtaaagctcaggagggatagcgccat 33
>41640_vvi-MIR390:mirbase
Length = 140
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
>41237_csi-MIR390:mirbase
Length = 154
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 16 ctgttaagctcaggagggatagcgccat 43
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcatgg 100
|||||||||||||||||||||||||
Sbjct: 98 gcgctatccatcctgagtttcatgg 122
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 16 ctgttaagctcaggagggatagcgccat 43
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 88 gcgctatccatcctgagtttcat 110
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgccat 33
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 87 gcgctatccatcctgagtttcat 109
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 13 ctgttaagctcaggagggatagcgccat 40
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 94 gcgctatccatcctgagtttcat 116
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
||||||||||||||||||||||||||||
Sbjct: 10 ctgttaagctcaggagggatagcgccat 37
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 91 gcgctatccatcctgagtttcat 113
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagttt 95
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 6 ctgttaagctcaggagggatagcgcc 31
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagtttcat 101
>40371_rco-MIR390a:mirbase
Length = 108
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgcc 26
||||||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgcc 26
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttca 97
||||||||||||||||||||||
Sbjct: 82 gcgctatccatcctgagtttca 103
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 16 ctgtaaagctcaggagggatagcgccat 43
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcatgg 100
|||||||| ||||||||||||||||
Sbjct: 79 gcgctatctatcctgagtttcatgg 103
>40372_rco-MIR390b:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 taagctcaggagggatagcgccat 28
||||||||||||||||||||||||
Sbjct: 5 taagctcaggagggatagcgccat 28
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 67 tcttctcttgcgctatccatcctgagtttcat 98
|||||| | |||||||||||||||||||||||
Sbjct: 87 tcttctatagcgctatccatcctgagtttcat 118
>40294_bna-MIR390c:mirbase
Length = 128
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccat 45
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcatgg 100
||||||||||||||||||| |||||
Sbjct: 85 gcgctatccatcctgagttccatgg 109
>40293_bna-MIR390b:mirbase
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 13 ctgtaaagctcaggagggatagcgccat 40
>40292_bna-MIR390a:mirbase
Length = 144
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccat 55
>40072_ath-MIR390a:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 13 ctgtaaagctcaggagggatagcgccat 40
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagtttcat 91
>39862_aly-MIR390a:mirbase
Length = 129
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 ctgttaagctcaggagggatagcgccat 28
|||| |||||||||||||||||||||||
Sbjct: 24 ctgtaaagctcaggagggatagcgccat 51
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 gcgctatccatcctgagtttcat 98
|||||||||||||||||||||||
Sbjct: 80 gcgctatccatcctgagtttcat 102
>40073_ath-MIR390b:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccat 28
|||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37
>39863_aly-MIR390b:mirbase
Length = 127
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccat 28
|||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccat 41
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgccat 28
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>42785_zma-MIR390b:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 3 aagctcaggagggatagcgcc 23
>41996_osa-MIR390:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 aagctcaggagggatagcgcc 26
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 agctcaggagggatagcgcc 26
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
