miRNEST 2.0, an integrative microRNA resource :: BLAST
>40735_mtr-MIR399e:mirbase
Length = 134
Score = 226 bits (114), Expect = 3e-60
Identities = 129/134 (96%)
Strand = Plus / Plus
Query: 1 tccaagttgcagttgaattacagggtgagttctccattggcaggtagctagtcactatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 tccaagttgcagttgaattacagggtgagttctccattggcaggtagctagccactatat 60
Query: 61 gatatgcattgcaatcatttcttagtgtgcaatctgccaaaggagatttgcccagcgatt 120
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 gatatgcattgcaatcatcacttagtgtgtaatctgccaaaggagatttgcccagcgatt 120
Query: 121 ctcctgcaactcta 134
||| ||||||||||
Sbjct: 121 ctcatgcaactcta 134
>40736_mtr-MIR399f:mirbase
Length = 104
Score = 182 bits (92), Expect = 4e-47
Identities = 102/104 (98%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 18 ttacagggtgagttctccattggcaggtagctagtcactatatgatatgcattgcaa-tc 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 ttacagggtgagttctccattggcaggtagctagtcactatatgatatgcattgcaattc 60
Query: 77 atttcttagtgtgcaatctgccaaaggagatttgcccagcgatt 120
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctcttagtgtgcaatctgccaaaggagatttgcccagcgatt 104
>42047_osa-MIR399g:mirbase
Length = 119
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 92 atctgccaaaggagatttgcccagcgattc 121
||||||||||||||||||||||||||||||
Sbjct: 86 atctgccaaaggagatttgcccagcgattc 115
>40737_mtr-MIR399g:mirbase
Length = 104
Score = 54.0 bits (27), Expect = 3e-08
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 58 tatgatatgcattgcaatcatt-tctt--agtgtgcaatctgccaaaggagatttgccca 114
||||||||||||||||| ||| |||| |||||| || |||||||||||||||||||||
Sbjct: 39 tatgatatgcattgcaaccatactctttgagtgtgtaacctgccaaaggagatttgccca 98
Query: 115 gc 116
||
Sbjct: 99 gc 100
>40387_rco-MIR399e:mirbase
Length = 108
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 84 agtgtgcaatctgccaaaggagatttgcccagc 116
||||||| ||||||||||||||||||||||||
Sbjct: 72 agtgtgccttctgccaaaggagatttgcccagc 104
>42594_sbi-MIR399f:mirbase
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccagc 116
||||||||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgcccagc 102
>42046_osa-MIR399f:mirbase
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccagc 116
||||||||||||||||||||||||
Sbjct: 85 tctgccaaaggagatttgcccagc 108
>41672_vvi-MIR399e:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 83 tagtgtgcaatctgccaaaggagatttgcccagcgattct 122
|||||||| ||||||||||||||||||||| || |||||
Sbjct: 70 tagtgtgccctctgccaaaggagatttgcccggcaattct 109
>42593_sbi-MIR399e:mirbase
Length = 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccagc 116
|||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccagc 108
>42045_osa-MIR399e:mirbase
Length = 118
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccagc 116
|||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagc 109
>41246_csi-MIR399a:mirbase
Length = 155
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 84 agtgtgcaatctgccaaaggagatttgccc 113
||||||| |||||||||||||||||||||
Sbjct: 103 agtgtgccttctgccaaaggagatttgccc 132
>41149_tcc-MIR399d:mirbase
Length = 136
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccagcgattct 122
||||||||||||||||||||| || |||||
Sbjct: 94 tctgccaaaggagatttgcccggcaattct 123
>41148_tcc-MIR399c:mirbase
Length = 141
Score = 44.1 bits (22), Expect = 3e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccagcgattctcctgcaac 130
|||||||| ||||||||||||||| |||| |||||||
Sbjct: 99 tctgccaatggagatttgcccagcaattccactgcaac 136
>41147_tcc-MIR399b:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccagcgattct 122
||||||||||||||||||||| || |||||
Sbjct: 93 tctgccaaaggagatttgcccggcaattct 122
>40092_ath-MIR399a:mirbase
Length = 123
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 atctgccaaaggagatttgccc 113
||||||||||||||||||||||
Sbjct: 90 atctgccaaaggagatttgccc 111
>40385_rco-MIR399c:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccagcgat 119
||||||||||||||||||| |||||
Sbjct: 71 tgccaaaggagatttgcccggcgat 95
>40299_bna-MIR399:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgccc 113
|||||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgccc 99
>40097_ath-MIR399f:mirbase
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgccc 113
|||||||||||||||||||||
Sbjct: 86 tctgccaaaggagatttgccc 106
>40095_ath-MIR399d:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgccc 113
|||||||||||||||||||||
Sbjct: 68 tctgccaaaggagatttgccc 88
>39889_aly-MIR399f:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgccc 113
|||||||||||||||||||||
Sbjct: 110 tctgccaaaggagatttgccc 130
>39887_aly-MIR399d:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgccc 113
|||||||||||||||||||||
Sbjct: 82 tctgccaaaggagatttgccc 102
>39884_aly-MIR399a:mirbase
Length = 162
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgccc 113
|||||||||||||||||||||
Sbjct: 111 tctgccaaaggagatttgccc 131
>42821_zma-MIR399c:mirbase
Length = 207
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccagcgattct 122
|||||||||||| |||||| ||||||||
Sbjct: 168 tgccaaaggagaattgccctgcgattct 195
>42591_sbi-MIR399c:mirbase
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccagcgattct 122
|||||||||||| |||||| ||||||||
Sbjct: 91 tgccaaaggagaattgccctgcgattct 118
>41674_vvi-MIR399g:mirbase
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgccc 113
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>41450_ptc-MIR399c:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccagcgattct 122
||||||||||||||||||| || |||||
Sbjct: 97 tgccaaaggagatttgcccggcaattct 124
>41449_ptc-MIR399b:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccagcgattct 122
||||||||||||||||||| || |||||
Sbjct: 97 tgccaaaggagatttgcccggcaattct 124
>41448_ptc-MIR399a:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgccc 113
||||||||||||||||||||
Sbjct: 90 ctgccaaaggagatttgccc 109
>41153_tcc-MIR399h:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgccc 113
||||||||||||||||||||
Sbjct: 76 ctgccaaaggagatttgccc 95
>40388_rco-MIR399f:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 atctgccaaaggagatttgc 111
||||||||||||||||||||
Sbjct: 59 atctgccaaaggagatttgc 78
>40384_rco-MIR399b:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgccc 113
||||||||||||||||||||
Sbjct: 80 ctgccaaaggagatttgccc 99
>40096_ath-MIR399e:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcc 112
||||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgcc 96
>39892_aly-MIR399i:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgccc 113
||||||||||||||||||||
Sbjct: 91 ctgccaaaggagatttgccc 110
>39890_aly-MIR399g:mirbase
Length = 157
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgccc 113
||||||||||||||||||||
Sbjct: 110 ctgccaaaggagatttgccc 129
>39888_aly-MIR399e:mirbase
Length = 191
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcc 112
||||||||||||||||||||
Sbjct: 116 tctgccaaaggagatttgcc 135
