miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40735_mtr-MIR399e:mirbase
          Length = 134

 Score = 61.9 bits (31), Expect = 8e-11
 Identities = 56/62 (90%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                       
Query: 39  tatgatatgcattgcaaccatactctttgagtgtgtaacctgccaaaggagatttgccca 98
           ||||||||||||||||| ||| | |||  ||||||||| |||||||||||||||||||||
Sbjct: 58  tatgatatgcattgcaatcat-cactt--agtgtgtaatctgccaaaggagatttgccca 114

             
Query: 99  gc 100
           ||
Sbjct: 115 gc 116




>40731_mtr-MIR399a:mirbase
          Length = 134

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 55/62 (88%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                       
Query: 39  tatgatatgcattgcaaccatactctttgagtgtgtaacctgccaaaggagatttgccca 98
           ||||||||||||||||| |||  ||||  |||||| || |||||||||||||||||||||
Sbjct: 58  tatgatatgcattgcaatcatt-tctt--agtgtgcaatctgccaaaggagatttgccca 114

             
Query: 99  gc 100
           ||
Sbjct: 115 gc 116




>40387_rco-MIR399e:mirbase
          Length = 108

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||||||||||
Sbjct: 82  ctgccaaaggagatttgcccagcaatt 108




>42594_sbi-MIR399f:mirbase
          Length = 120

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 78  ctgccaaaggagatttgcccagcaat 103
           ||||||||||||||||||||||||||
Sbjct: 80  ctgccaaaggagatttgcccagcaat 105




>42593_sbi-MIR399e:mirbase
          Length = 126

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 78  ctgccaaaggagatttgcccagcaat 103
           ||||||||||||||||||||||||||
Sbjct: 86  ctgccaaaggagatttgcccagcaat 111




>42046_osa-MIR399f:mirbase
          Length = 117

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 78  ctgccaaaggagatttgcccagcaat 103
           ||||||||||||||||||||||||||
Sbjct: 86  ctgccaaaggagatttgcccagcaat 111




>42045_osa-MIR399e:mirbase
          Length = 118

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 78  ctgccaaaggagatttgcccagcaat 103
           ||||||||||||||||||||||||||
Sbjct: 87  ctgccaaaggagatttgcccagcaat 112




>40736_mtr-MIR399f:mirbase
          Length = 104

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 68  agtgtgtaacctgccaaaggagatttgcccagc 100
           |||||| || |||||||||||||||||||||||
Sbjct: 68  agtgtgcaatctgccaaaggagatttgcccagc 100




>40384_rco-MIR399b:mirbase
          Length = 106

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 68  agtgtgtaacctgccaaaggagatttgcccagcaat 103
           |||||||  ||||||||||||||||||||| |||||
Sbjct: 70  agtgtgtgccctgccaaaggagatttgcccggcaat 105




>42047_osa-MIR399g:mirbase
          Length = 119

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  ctgccaaaggagatttgcccagc 100
           |||||||||||||||||||||||
Sbjct: 88  ctgccaaaggagatttgcccagc 110




>41672_vvi-MIR399e:mirbase
          Length = 112

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 81  ctgccaaaggagatttgcccggcaatt 107




>41448_ptc-MIR399a:mirbase
          Length = 120

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 90  ctgccaaaggagatttgccccgcaatt 116




>41246_csi-MIR399a:mirbase
          Length = 155

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 113 ctgccaaaggagatttgcccggcaatt 139




>41153_tcc-MIR399h:mirbase
          Length = 117

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 76  ctgccaaaggagatttgccccgcaatt 102




>41149_tcc-MIR399d:mirbase
          Length = 136

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 95  ctgccaaaggagatttgcccggcaatt 121




>41148_tcc-MIR399c:mirbase
          Length = 141

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           ||||||| |||||||||||||||||||
Sbjct: 100 ctgccaatggagatttgcccagcaatt 126




>41147_tcc-MIR399b:mirbase
          Length = 135

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 94  ctgccaaaggagatttgcccggcaatt 120




>40095_ath-MIR399d:mirbase
          Length = 100

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 69  ctgccaaaggagatttgccccgcaatt 95




>39892_aly-MIR399i:mirbase
          Length = 127

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 91  ctgccaaaggagatttgccccgcaatt 117




>39890_aly-MIR399g:mirbase
          Length = 157

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 110 ctgccaaaggagatttgccccgcaatt 136




>39887_aly-MIR399d:mirbase
          Length = 135

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  ctgccaaaggagatttgcccagcaatt 104
           |||||||||||||||||||| ||||||
Sbjct: 83  ctgccaaaggagatttgccccgcaatt 109




>42048_osa-MIR399h:mirbase
          Length = 99

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 78  ctgccaaaggagatttgcccagcaat 103
           ||||||||||||| ||||||||||||
Sbjct: 68  ctgccaaaggagacttgcccagcaat 93




>41450_ptc-MIR399c:mirbase
          Length = 126

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 79  tgccaaaggagatttgcccagcaatt 104
           ||||||||||||||||||| ||||||
Sbjct: 97  tgccaaaggagatttgcccggcaatt 122




>41449_ptc-MIR399b:mirbase
          Length = 126

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 79  tgccaaaggagatttgcccagcaatt 104
           ||||||||||||||||||| ||||||
Sbjct: 97  tgccaaaggagatttgcccggcaatt 122




>41674_vvi-MIR399g:mirbase
          Length = 113

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ctgccaaaggagatttgccc 97
           ||||||||||||||||||||
Sbjct: 82  ctgccaaaggagatttgccc 101




>40299_bna-MIR399:mirbase
          Length = 102

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 78 ctgccaaaggagatttgccc 97
          ||||||||||||||||||||
Sbjct: 80 ctgccaaaggagatttgccc 99




>40097_ath-MIR399f:mirbase
          Length = 118

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ctgccaaaggagatttgccc 97
           ||||||||||||||||||||
Sbjct: 87  ctgccaaaggagatttgccc 106




>40092_ath-MIR399a:mirbase
          Length = 123

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ctgccaaaggagatttgccc 97
           ||||||||||||||||||||
Sbjct: 92  ctgccaaaggagatttgccc 111




>39889_aly-MIR399f:mirbase
          Length = 167

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ctgccaaaggagatttgccc 97
           ||||||||||||||||||||
Sbjct: 111 ctgccaaaggagatttgccc 130




>39884_aly-MIR399a:mirbase
          Length = 162

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  ctgccaaaggagatttgccc 97
           ||||||||||||||||||||
Sbjct: 112 ctgccaaaggagatttgccc 131