miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40738_mtr-MIR399h:mirbase
          Length = 90

 Score =  170 bits (86), Expect = 1e-43
 Identities = 89/90 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  aatgatagagcaaatctctattagcagaacgaagtagaaagcttggacatgcatgcttct 60
          |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1  aatgatagagcaaatctctattggcagaacgaagtagaaagcttggacatgcatgcttct 60

                                        
Query: 61 ggtttgccaaaggagatttgccctgccatt 90
          ||||||||||||||||||||||||||||||
Sbjct: 61 ggtttgccaaaggagatttgccctgccatt 90




>40741_mtr-MIR399k:mirbase
          Length = 94

 Score = 71.9 bits (36), Expect = 7e-14
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                  
Query: 35 tagaaagcttggacatgcatgcttctggtttgccaaaggagatttgccctgccatt 90
          |||| |||||| |||||| ||||||| ||||||||||| |||||||||||||||||
Sbjct: 39 tagagagcttgaacatgcttgcttctagtttgccaaagaagatttgccctgccatt 94




>40733_mtr-MIR399c:mirbase
          Length = 119

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 57  ttctggtttgccaaaggagatttgccctgccatt 90
           ||||||||||||||||||||||||||||||||||
Sbjct: 72  ttctggtttgccaaaggagatttgccctgccatt 105




>41675_vvi-MIR399h:mirbase
          Length = 90

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                      
Query: 47 acatgcatgcttctggtttgccaaaggagatttgccctgccatt 90
          |||||||| |||||| |||||||||||||| |||||||||||||
Sbjct: 42 acatgcatacttctgttttgccaaaggagaattgccctgccatt 85




>41063_ghr-MIR399d:mirbase
          Length = 98

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 63 tttgccaaaggagatttgccctgccatt 90
          ||||||||||||||||||||||||||||
Sbjct: 65 tttgccaaaggagatttgccctgccatt 92




>41152_tcc-MIR399g:mirbase
          Length = 112

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 56 cttctggtttgccaaaggagatttgccctgccatt 90
          |||||| |||||||||||||| |||||||||||||
Sbjct: 63 cttctgttttgccaaaggagaattgccctgccatt 97




>41453_ptc-MIR399f:mirbase
          Length = 101

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 57 ttctggtttgccaaaggagatttgccctgccatt 90
          ||||| |||||||||||||| |||||||||||||
Sbjct: 64 ttctgttttgccaaaggagaattgccctgccatt 97




>41250_csi-MIR399e:mirbase
          Length = 154

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 62 gtttgccaaaggagatttgccctgccatt 90
          ||||||||||||||| |||||||||||||
Sbjct: 15 gtttgccaaaggagaattgccctgccatt 43




>41248_csi-MIR399c:mirbase
          Length = 149

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 62  gtttgccaaaggagatttgccctgccatt 90
           ||||||||||||||| |||||||||||||
Sbjct: 106 gtttgccaaaggagaattgccctgccatt 134




>41151_tcc-MIR399f:mirbase
          Length = 111

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 63 tttgccaaaggagatttgccctgccatt 90
          ||||||| ||||||||||||||||||||
Sbjct: 69 tttgccagaggagatttgccctgccatt 96




>42819_zma-MIR399a:mirbase
          Length = 123

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 64  ttgccaaaggagatttgccctgccatt 90
           ||||||||||||| |||||||||||||
Sbjct: 83  ttgccaaaggagaattgccctgccatt 109




>41892_hvu-MIR399:mirbase
          Length = 131

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 61  ggtttgccaaaggagatttgccc 83
           |||||||||||||||||||||||
Sbjct: 98  ggtttgccaaaggagatttgccc 120



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 63 tttgccaaaggagatttgcc 82
          ||||||||||||||||||||
Sbjct: 19 tttgccaaaggagatttgcc 38




>41803_bdi-MIR399b:mirbase
          Length = 160

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 64  ttgccaaaggagatttgccctgccatt 90
           ||||||||||||| |||||||||||||
Sbjct: 109 ttgccaaaggagaattgccctgccatt 135




>42596_sbi-MIR399h:mirbase
          Length = 132

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 65  tgccaaaggagatttgccctgccatt 90
           |||||||||||| |||||||||||||
Sbjct: 93  tgccaaaggagaattgccctgccatt 118




>42042_osa-MIR399b:mirbase
          Length = 97

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 65 tgccaaaggagatttgccctgccatt 90
          |||||||||||| |||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccatt 92




>41454_ptc-MIR399g:mirbase
          Length = 94

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 65 tgccaaaggagatttgccctgccatt 90
          |||||||||||| |||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgccatt 90




>41150_tcc-MIR399e:mirbase
          Length = 117

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 66  gccaaaggagatttgccctgccatt 90
           ||||||||||| |||||||||||||
Sbjct: 78  gccaaaggagaattgccctgccatt 102




>40092_ath-MIR399a:mirbase
          Length = 123

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 65  tgccaaaggagatttgccctg 85
           |||||||||||||||||||||
Sbjct: 93  tgccaaaggagatttgccctg 113




>39889_aly-MIR399f:mirbase
          Length = 167

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 65  tgccaaaggagatttgccctg 85
           |||||||||||||||||||||
Sbjct: 112 tgccaaaggagatttgccctg 132




>42598_sbi-MIR399j:mirbase
          Length = 93

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 64 ttgccaaaggagatttgccctgcc 87
          ||||||||||||| ||||||||||
Sbjct: 70 ttgccaaaggagaattgccctgcc 93




>39893_aly-MIR399j:mirbase
          Length = 136

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  ttgccaaaggagatttgccc 83
           ||||||||||||||||||||
Sbjct: 95  ttgccaaaggagatttgccc 114




>39891_aly-MIR399h:mirbase
          Length = 106

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  ttgccaaaggagatttgccc 83
           ||||||||||||||||||||
Sbjct: 81  ttgccaaaggagatttgccc 100