miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40738_mtr-MIR399h:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 aatgatagagcaaatctctattagcagaacgaagtagaaagcttggacatgcatgcttct 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatgatagagcaaatctctattggcagaacgaagtagaaagcttggacatgcatgcttct 60
Query: 61 ggtttgccaaaggagatttgccctgccatt 90
||||||||||||||||||||||||||||||
Sbjct: 61 ggtttgccaaaggagatttgccctgccatt 90
>40741_mtr-MIR399k:mirbase
Length = 94
Score = 71.9 bits (36), Expect = 7e-14
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 35 tagaaagcttggacatgcatgcttctggtttgccaaaggagatttgccctgccatt 90
|||| |||||| |||||| ||||||| ||||||||||| |||||||||||||||||
Sbjct: 39 tagagagcttgaacatgcttgcttctagtttgccaaagaagatttgccctgccatt 94
>40733_mtr-MIR399c:mirbase
Length = 119
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 57 ttctggtttgccaaaggagatttgccctgccatt 90
||||||||||||||||||||||||||||||||||
Sbjct: 72 ttctggtttgccaaaggagatttgccctgccatt 105
>41675_vvi-MIR399h:mirbase
Length = 90
Score = 63.9 bits (32), Expect = 2e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 47 acatgcatgcttctggtttgccaaaggagatttgccctgccatt 90
|||||||| |||||| |||||||||||||| |||||||||||||
Sbjct: 42 acatgcatacttctgttttgccaaaggagaattgccctgccatt 85
>41063_ghr-MIR399d:mirbase
Length = 98
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 63 tttgccaaaggagatttgccctgccatt 90
||||||||||||||||||||||||||||
Sbjct: 65 tttgccaaaggagatttgccctgccatt 92
>41152_tcc-MIR399g:mirbase
Length = 112
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 56 cttctggtttgccaaaggagatttgccctgccatt 90
|||||| |||||||||||||| |||||||||||||
Sbjct: 63 cttctgttttgccaaaggagaattgccctgccatt 97
>41453_ptc-MIR399f:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 57 ttctggtttgccaaaggagatttgccctgccatt 90
||||| |||||||||||||| |||||||||||||
Sbjct: 64 ttctgttttgccaaaggagaattgccctgccatt 97
>41250_csi-MIR399e:mirbase
Length = 154
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 62 gtttgccaaaggagatttgccctgccatt 90
||||||||||||||| |||||||||||||
Sbjct: 15 gtttgccaaaggagaattgccctgccatt 43
>41248_csi-MIR399c:mirbase
Length = 149
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 62 gtttgccaaaggagatttgccctgccatt 90
||||||||||||||| |||||||||||||
Sbjct: 106 gtttgccaaaggagaattgccctgccatt 134
>41151_tcc-MIR399f:mirbase
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 tttgccaaaggagatttgccctgccatt 90
||||||| ||||||||||||||||||||
Sbjct: 69 tttgccagaggagatttgccctgccatt 96
>42819_zma-MIR399a:mirbase
Length = 123
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 ttgccaaaggagatttgccctgccatt 90
||||||||||||| |||||||||||||
Sbjct: 83 ttgccaaaggagaattgccctgccatt 109
>41892_hvu-MIR399:mirbase
Length = 131
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 ggtttgccaaaggagatttgccc 83
|||||||||||||||||||||||
Sbjct: 98 ggtttgccaaaggagatttgccc 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 tttgccaaaggagatttgcc 82
||||||||||||||||||||
Sbjct: 19 tttgccaaaggagatttgcc 38
>41803_bdi-MIR399b:mirbase
Length = 160
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 ttgccaaaggagatttgccctgccatt 90
||||||||||||| |||||||||||||
Sbjct: 109 ttgccaaaggagaattgccctgccatt 135
>42596_sbi-MIR399h:mirbase
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgccaaaggagatttgccctgccatt 90
|||||||||||| |||||||||||||
Sbjct: 93 tgccaaaggagaattgccctgccatt 118
>42042_osa-MIR399b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgccaaaggagatttgccctgccatt 90
|||||||||||| |||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccatt 92
>41454_ptc-MIR399g:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgccaaaggagatttgccctgccatt 90
|||||||||||| |||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgccatt 90
>41150_tcc-MIR399e:mirbase
Length = 117
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 66 gccaaaggagatttgccctgccatt 90
||||||||||| |||||||||||||
Sbjct: 78 gccaaaggagaattgccctgccatt 102
>40092_ath-MIR399a:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgccaaaggagatttgccctg 85
|||||||||||||||||||||
Sbjct: 93 tgccaaaggagatttgccctg 113
>39889_aly-MIR399f:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgccaaaggagatttgccctg 85
|||||||||||||||||||||
Sbjct: 112 tgccaaaggagatttgccctg 132
>42598_sbi-MIR399j:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 ttgccaaaggagatttgccctgcc 87
||||||||||||| ||||||||||
Sbjct: 70 ttgccaaaggagaattgccctgcc 93
>39893_aly-MIR399j:mirbase
Length = 136
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 ttgccaaaggagatttgccc 83
||||||||||||||||||||
Sbjct: 95 ttgccaaaggagatttgccc 114
>39891_aly-MIR399h:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 ttgccaaaggagatttgccc 83
||||||||||||||||||||
Sbjct: 81 ttgccaaaggagatttgccc 100