miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40744_mtr-MIR399n:mirbase
Length = 100
Score = 81.8 bits (41), Expect = 7e-17
Identities = 79/95 (83%), Gaps = 15/95 (15%)
Strand = Plus / Plus
Query: 1 agtcatagggcatgtctctattggcaggtgatatagtgatat---------------ggc 45
|||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 1 agtcatagggcatgtctctattggcaggtgatatggtgatatttcatttgactttaaggc 60
Query: 46 tctagaaattcacttgccaaaggagagctgcccta 80
|||||||||||||||||||||||||||||||||||
Sbjct: 61 tctagaaattcacttgccaaaggagagctgcccta 95
>40745_mtr-MIR399o:mirbase
Length = 92
Score = 77.8 bits (39), Expect = 1e-15
Identities = 75/86 (87%), Gaps = 7/86 (8%)
Strand = Plus / Plus
Query: 1 agtcatagggcatgtctctattggcaggtgatatag----tgatat---ggctctagaaa 53
|||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct: 1 agtcatagggcatgtctctattggcaggtgatatttcatttgacttagaggctctagaaa 60
Query: 54 ttcacttgccaaaggagagctgccct 79
||||||||||||||||||||||||||
Sbjct: 61 ttcacttgccaaaggagagctgccct 86
>40734_mtr-MIR399d:mirbase
Length = 129
Score = 75.8 bits (38), Expect = 4e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 1 agtcatagggcatgtctctattggcaggtgatatagtgatat 42
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 16 agtcatagggcatgtctctattggcaggtgatatggtgatat 57
>40732_mtr-MIR399b:mirbase
Length = 112
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 3 tcatagggcatgtctctattggcaggtgatatagtgatat 42
|||||||||||||||||||||| ||||||||| |||||||
Sbjct: 1 tcatagggcatgtctctattggtaggtgatatggtgatat 40
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 49 agaaattcacttgccaaaggagagctgccct 79
|||||||||||||||||||||||||||||||
Sbjct: 62 agaaattcacttgccaaaggagagctgccct 92
>41456_ptc-MIR399i:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 cttgccaaaggagagctgccctatga 83
||||||||||||||| ||||||||||
Sbjct: 77 cttgccaaaggagagttgccctatga 102
>40386_rco-MIR399d:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 cttgccaaaggagagctgccct 79
||||||||||||||||||||||
Sbjct: 76 cttgccaaaggagagctgccct 97
>40094_ath-MIR399c:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 tcacttgccaaaggagagctgccct 79
|||||||||||||||||| ||||||
Sbjct: 79 tcacttgccaaaggagagttgccct 103
>39886_aly-MIR399c:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 tcacttgccaaaggagagctgccct 79
|||||||||||||||||| ||||||
Sbjct: 84 tcacttgccaaaggagagttgccct 108
>42822_zma-MIR399d:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 tgccaaaggagagctgccct 79
||||||||||||||||||||
Sbjct: 86 tgccaaaggagagctgccct 105
>42590_sbi-MIR399b:mirbase
Length = 121
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 tgccaaaggagagctgccct 79
||||||||||||||||||||
Sbjct: 82 tgccaaaggagagctgccct 101
>42049_osa-MIR399i:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 tgccaaaggagagctgccct 79
||||||||||||||||||||
Sbjct: 86 tgccaaaggagagctgccct 105
>41192_aqc-MIR399:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 60 tgccaaaggagagctgccctatga 83
||||||||||||| ||||||||||
Sbjct: 72 tgccaaaggagagttgccctatga 95
>40747_mtr-MIR399q:mirbase
Length = 174
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 acttgccaaaggagagctgc 76
||||||||||||||||||||
Sbjct: 135 acttgccaaaggagagctgc 154
>41669_vvi-MIR399b:mirbase
Length = 117
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 57 acttgccaaaggagagctgccct 79
|||||||||||||||| ||||||
Sbjct: 84 acttgccaaaggagagttgccct 106
>41154_tcc-MIR399i:mirbase
Length = 157
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 57 acttgccaaaggagagctgccct 79
|||||||||||||||| ||||||
Sbjct: 114 acttgccaaaggagagttgccct 136
>40746_mtr-MIR399p:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 57 acttgccaaaggagagctgccct 79
|||||||||||||||| ||||||
Sbjct: 51 acttgccaaaggagagttgccct 73
>40742_mtr-MIR399l:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 57 acttgccaaaggagagctgccct 79
|||||||||||||||| ||||||
Sbjct: 51 acttgccaaaggagagttgccct 73
