miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40742_mtr-MIR399l:mirbase
          Length = 79

 Score =  157 bits (79), Expect = 1e-39
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aacaatagggcacctctctcctggcaagtaaaaagggctcagtgccaataacttgccaaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aacaatagggcacctctctcctggcaagtaaaaagggctcagtgccaataacttgccaaa 60

                             
Query: 61 ggagagttgccctgtggct 79
          |||||||||||||||||||
Sbjct: 61 ggagagttgccctgtggct 79




>41669_vvi-MIR399b:mirbase
          Length = 117

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 51  acttgccaaaggagagttgccctgtg 76
           ||||||||||||||||||||||||||
Sbjct: 84  acttgccaaaggagagttgccctgtg 109




>41154_tcc-MIR399i:mirbase
          Length = 157

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 51  acttgccaaaggagagttgccctgtg 76
           ||||||||||||||||||||||||||
Sbjct: 114 acttgccaaaggagagttgccctgtg 139




>41146_tcc-MIR399a:mirbase
          Length = 136

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 46  caataacttgccaaaggagagttgccctgt 75
           |||||||| |||||||||||||||||||||
Sbjct: 88  caataactcgccaaaggagagttgccctgt 117




>41027_pvu-MIR399a:mirbase
          Length = 223

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 47  aataacttgccaaaggagagttgccctgt 75
           |||| ||||||||||||||||||||||||
Sbjct: 82  aatatcttgccaaaggagagttgccctgt 110




>40383_rco-MIR399a:mirbase
          Length = 93

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 52 cttgccaaaggagagttgccctgtg 76
          |||||||||||||||||||||||||
Sbjct: 66 cttgccaaaggagagttgccctgtg 90




>40094_ath-MIR399c:mirbase
          Length = 114

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 51  acttgccaaaggagagttgccctgt 75
           |||||||||||||||||||||||||
Sbjct: 81  acttgccaaaggagagttgccctgt 105




>39886_aly-MIR399c:mirbase
          Length = 125

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 51  acttgccaaaggagagttgccctgt 75
           |||||||||||||||||||||||||
Sbjct: 86  acttgccaaaggagagttgccctgt 110




>41670_vvi-MIR399c:mirbase
          Length = 82

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 54 tgccaaaggagagttgccctgtg 76
          |||||||||||||||||||||||
Sbjct: 52 tgccaaaggagagttgccctgtg 74




>41249_csi-MIR399d:mirbase
          Length = 130

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 54  tgccaaaggagagttgccctgtg 76
           |||||||||||||||||||||||
Sbjct: 100 tgccaaaggagagttgccctgtg 122




>42823_zma-MIR399e:mirbase
          Length = 124

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 54  tgccaaaggagagttgccctgt 75
           ||||||||||||||||||||||
Sbjct: 85  tgccaaaggagagttgccctgt 106




>42597_sbi-MIR399i:mirbase
          Length = 121

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 54  tgccaaaggagagttgccctgt 75
           ||||||||||||||||||||||
Sbjct: 82  tgccaaaggagagttgccctgt 103




>41676_vvi-MIR399i:mirbase
          Length = 122

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 55  gccaaaggagagttgccctgtg 76
           ||||||||||||||||||||||
Sbjct: 93  gccaaaggagagttgccctgtg 114




>41456_ptc-MIR399i:mirbase
          Length = 108

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 52 cttgccaaaggagagttgccct 73
          ||||||||||||||||||||||
Sbjct: 77 cttgccaaaggagagttgccct 98




>40732_mtr-MIR399b:mirbase
          Length = 112

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 51 acttgccaaaggagagttgccctgtg 76
          |||||||||||||||| |||||||||
Sbjct: 70 acttgccaaaggagagctgccctgtg 95




>42828_zma-MIR399j:mirbase
          Length = 175

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 54  tgccaaaggagagttgccctg 74
           |||||||||||||||||||||
Sbjct: 154 tgccaaaggagagttgccctg 174




>42827_zma-MIR399i:mirbase
          Length = 91

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 54 tgccaaaggagagttgccctg 74
          |||||||||||||||||||||
Sbjct: 70 tgccaaaggagagttgccctg 90




>42592_sbi-MIR399d:mirbase
          Length = 205

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 54  tgccaaaggagagttgccctg 74
           |||||||||||||||||||||
Sbjct: 166 tgccaaaggagagttgccctg 186




>42044_osa-MIR399d:mirbase
          Length = 286

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 54  tgccaaaggagagttgccctg 74
           |||||||||||||||||||||
Sbjct: 256 tgccaaaggagagttgccctg 276




>41455_ptc-MIR399h:mirbase
          Length = 132

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 52  cttgccaaaggagagttgccctgtg 76
           ||||||||||||||||| |||||||
Sbjct: 101 cttgccaaaggagagtttccctgtg 125




>40386_rco-MIR399d:mirbase
          Length = 103

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 52  cttgccaaaggagagttgccctgtg 76
           ||||||||||||||| |||||||||
Sbjct: 76  cttgccaaaggagagctgccctgtg 100




>40093_ath-MIR399b:mirbase
          Length = 135

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 54  tgccaaaggagagttgccctg 74
           |||||||||||||||||||||
Sbjct: 105 tgccaaaggagagttgccctg 125




>39885_aly-MIR399b:mirbase
          Length = 154

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 54  tgccaaaggagagttgccctg 74
           |||||||||||||||||||||
Sbjct: 106 tgccaaaggagagttgccctg 126




>42050_osa-MIR399j:mirbase
          Length = 106

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgccaaaggagagttgccct 73
          ||||||||||||||||||||
Sbjct: 76 tgccaaaggagagttgccct 95




>41548_sly-MIR399:mirbase
          Length = 71

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgccaaaggagagttgccct 73
          ||||||||||||||||||||
Sbjct: 51 tgccaaaggagagttgccct 70




>41247_csi-MIR399b:mirbase
          Length = 168

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  tgccaaaggagagttgccct 73
           ||||||||||||||||||||
Sbjct: 125 tgccaaaggagagttgccct 144




>41192_aqc-MIR399:mirbase
          Length = 98

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 54 tgccaaaggagagttgccct 73
          ||||||||||||||||||||
Sbjct: 72 tgccaaaggagagttgccct 91




>40745_mtr-MIR399o:mirbase
          Length = 92

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 51 acttgccaaaggagagttgccctg 74
          |||||||||||||||| |||||||
Sbjct: 64 acttgccaaaggagagctgccctg 87




>42826_zma-MIR399h:mirbase
          Length = 94

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 52 cttgccaaaggagagttgccctg 74
          |||||||||||||| ||||||||
Sbjct: 71 cttgccaaaggagaattgccctg 93




>42819_zma-MIR399a:mirbase
          Length = 123

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 52  cttgccaaaggagagttgccctg 74
           |||||||||||||| ||||||||
Sbjct: 82  cttgccaaaggagaattgccctg 104




>42598_sbi-MIR399j:mirbase
          Length = 93

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 52 cttgccaaaggagagttgccctg 74
          |||||||||||||| ||||||||
Sbjct: 69 cttgccaaaggagaattgccctg 91




>41803_bdi-MIR399b:mirbase
          Length = 160

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 52  cttgccaaaggagagttgccctg 74
           |||||||||||||| ||||||||
Sbjct: 108 cttgccaaaggagaattgccctg 130




>41459_ptc-MIR399l:mirbase
          Length = 109

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 55  gccaaaggagagttgccct 73
           |||||||||||||||||||
Sbjct: 82  gccaaaggagagttgccct 100




>40744_mtr-MIR399n:mirbase
          Length = 100

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 51 acttgccaaaggagagttgccct 73
          |||||||||||||||| ||||||
Sbjct: 72 acttgccaaaggagagctgccct 94




>40743_mtr-MIR399m:mirbase
          Length = 85

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 51 acttgccaaaggagagttgccct 73
          |||||||||||||||| ||||||
Sbjct: 57 acttgccaaaggagagctgccct 79




>40734_mtr-MIR399d:mirbase
          Length = 129

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 51  acttgccaaaggagagttgccct 73
           |||||||||||||||| ||||||
Sbjct: 87  acttgccaaaggagagctgccct 109