miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40742_mtr-MIR399l:mirbase
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 aacaatagggcacctctctcctggcaagtaaaaagggctcagtgccaataacttgccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacaatagggcacctctctcctggcaagtaaaaagggctcagtgccaataacttgccaaa 60
Query: 61 ggagagttgccctgtggct 79
|||||||||||||||||||
Sbjct: 61 ggagagttgccctgtggct 79
>41669_vvi-MIR399b:mirbase
Length = 117
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 acttgccaaaggagagttgccctgtg 76
||||||||||||||||||||||||||
Sbjct: 84 acttgccaaaggagagttgccctgtg 109
>41154_tcc-MIR399i:mirbase
Length = 157
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 acttgccaaaggagagttgccctgtg 76
||||||||||||||||||||||||||
Sbjct: 114 acttgccaaaggagagttgccctgtg 139
>41146_tcc-MIR399a:mirbase
Length = 136
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 46 caataacttgccaaaggagagttgccctgt 75
|||||||| |||||||||||||||||||||
Sbjct: 88 caataactcgccaaaggagagttgccctgt 117
>41027_pvu-MIR399a:mirbase
Length = 223
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 aataacttgccaaaggagagttgccctgt 75
|||| ||||||||||||||||||||||||
Sbjct: 82 aatatcttgccaaaggagagttgccctgt 110
>40383_rco-MIR399a:mirbase
Length = 93
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 cttgccaaaggagagttgccctgtg 76
|||||||||||||||||||||||||
Sbjct: 66 cttgccaaaggagagttgccctgtg 90
>40094_ath-MIR399c:mirbase
Length = 114
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 acttgccaaaggagagttgccctgt 75
|||||||||||||||||||||||||
Sbjct: 81 acttgccaaaggagagttgccctgt 105
>39886_aly-MIR399c:mirbase
Length = 125
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 acttgccaaaggagagttgccctgt 75
|||||||||||||||||||||||||
Sbjct: 86 acttgccaaaggagagttgccctgt 110
>41670_vvi-MIR399c:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccctgtg 76
|||||||||||||||||||||||
Sbjct: 52 tgccaaaggagagttgccctgtg 74
>41249_csi-MIR399d:mirbase
Length = 130
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccctgtg 76
|||||||||||||||||||||||
Sbjct: 100 tgccaaaggagagttgccctgtg 122
>42823_zma-MIR399e:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccctgt 75
||||||||||||||||||||||
Sbjct: 85 tgccaaaggagagttgccctgt 106
>42597_sbi-MIR399i:mirbase
Length = 121
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccctgt 75
||||||||||||||||||||||
Sbjct: 82 tgccaaaggagagttgccctgt 103
>41676_vvi-MIR399i:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 gccaaaggagagttgccctgtg 76
||||||||||||||||||||||
Sbjct: 93 gccaaaggagagttgccctgtg 114
>41456_ptc-MIR399i:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 cttgccaaaggagagttgccct 73
||||||||||||||||||||||
Sbjct: 77 cttgccaaaggagagttgccct 98
>40732_mtr-MIR399b:mirbase
Length = 112
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 acttgccaaaggagagttgccctgtg 76
|||||||||||||||| |||||||||
Sbjct: 70 acttgccaaaggagagctgccctgtg 95
>42828_zma-MIR399j:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccctg 74
|||||||||||||||||||||
Sbjct: 154 tgccaaaggagagttgccctg 174
>42827_zma-MIR399i:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccctg 74
|||||||||||||||||||||
Sbjct: 70 tgccaaaggagagttgccctg 90
>42592_sbi-MIR399d:mirbase
Length = 205
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccctg 74
|||||||||||||||||||||
Sbjct: 166 tgccaaaggagagttgccctg 186
>42044_osa-MIR399d:mirbase
Length = 286
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccctg 74
|||||||||||||||||||||
Sbjct: 256 tgccaaaggagagttgccctg 276
>41455_ptc-MIR399h:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 cttgccaaaggagagttgccctgtg 76
||||||||||||||||| |||||||
Sbjct: 101 cttgccaaaggagagtttccctgtg 125
>40386_rco-MIR399d:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 52 cttgccaaaggagagttgccctgtg 76
||||||||||||||| |||||||||
Sbjct: 76 cttgccaaaggagagctgccctgtg 100
>40093_ath-MIR399b:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccctg 74
|||||||||||||||||||||
Sbjct: 105 tgccaaaggagagttgccctg 125
>39885_aly-MIR399b:mirbase
Length = 154
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccctg 74
|||||||||||||||||||||
Sbjct: 106 tgccaaaggagagttgccctg 126
>42050_osa-MIR399j:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccct 73
||||||||||||||||||||
Sbjct: 76 tgccaaaggagagttgccct 95
>41548_sly-MIR399:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccct 73
||||||||||||||||||||
Sbjct: 51 tgccaaaggagagttgccct 70
>41247_csi-MIR399b:mirbase
Length = 168
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccct 73
||||||||||||||||||||
Sbjct: 125 tgccaaaggagagttgccct 144
>41192_aqc-MIR399:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54 tgccaaaggagagttgccct 73
||||||||||||||||||||
Sbjct: 72 tgccaaaggagagttgccct 91
>40745_mtr-MIR399o:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 51 acttgccaaaggagagttgccctg 74
|||||||||||||||| |||||||
Sbjct: 64 acttgccaaaggagagctgccctg 87
>42826_zma-MIR399h:mirbase
Length = 94
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 cttgccaaaggagagttgccctg 74
|||||||||||||| ||||||||
Sbjct: 71 cttgccaaaggagaattgccctg 93
>42819_zma-MIR399a:mirbase
Length = 123
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 cttgccaaaggagagttgccctg 74
|||||||||||||| ||||||||
Sbjct: 82 cttgccaaaggagaattgccctg 104
>42598_sbi-MIR399j:mirbase
Length = 93
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 cttgccaaaggagagttgccctg 74
|||||||||||||| ||||||||
Sbjct: 69 cttgccaaaggagaattgccctg 91
>41803_bdi-MIR399b:mirbase
Length = 160
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 cttgccaaaggagagttgccctg 74
|||||||||||||| ||||||||
Sbjct: 108 cttgccaaaggagaattgccctg 130
>41459_ptc-MIR399l:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 55 gccaaaggagagttgccct 73
|||||||||||||||||||
Sbjct: 82 gccaaaggagagttgccct 100
>40744_mtr-MIR399n:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 51 acttgccaaaggagagttgccct 73
|||||||||||||||| ||||||
Sbjct: 72 acttgccaaaggagagctgccct 94
>40743_mtr-MIR399m:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 51 acttgccaaaggagagttgccct 73
|||||||||||||||| ||||||
Sbjct: 57 acttgccaaaggagagctgccct 79
>40734_mtr-MIR399d:mirbase
Length = 129
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 51 acttgccaaaggagagttgccct 73
|||||||||||||||| ||||||
Sbjct: 87 acttgccaaaggagagctgccct 109