miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40768_mtr-MIR2111k:mirbase
          Length = 106

 Score =  163 bits (82), Expect = 3e-41
 Identities = 100/106 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaatta 60
           ||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 1   atattgggattcgattggataatctgcatcctgaggtttagaacaacagatgcgtaattc 60

                                                         
Query: 61  tatctaagccttggaatgcagattatctcttccttatcaccaatgc 106
           |||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 61  tatctaagccttgggatgctgattatctcttccttatcaccaatgc 106




>40765_mtr-MIR2111h:mirbase
          Length = 107

 Score =  135 bits (68), Expect = 7e-33
 Identities = 95/104 (91%)
 Strand = Plus / Plus

                                                                       
Query: 3   attgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaattata 62
           ||||||||  |||| |||||||||||||||||||||||||||||   |||||||| | ||
Sbjct: 3   attgggatcagatgagataatctgcatcctgaggtttagaacaatcgatgcgtaactgta 62

                                                       
Query: 63  tctaagccttggaatgcagattatctcttccttatcaccaatgc 106
           |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 63  tctaagccttagaatgcagattatctcttccttatcaccaatgc 106




>40772_mtr-MIR2111o:mirbase
          Length = 106

 Score =  129 bits (65), Expect = 4e-31
 Identities = 83/89 (93%)
 Strand = Plus / Plus

                                                                       
Query: 17  ggataatctgcatcctgaggtttagaacaacaaatgcgtaattatatctaagccttggaa 76
           ||||||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||| 
Sbjct: 17  ggataatctgcatcctgaggtttagaataacagctgcgtaattgtatctaagccttggag 76

                                        
Query: 77  tgcagattatctcttccttatcaccaatg 105
           |||||||||||||||||||| ||||||||
Sbjct: 77  tgcagattatctcttccttaacaccaatg 105




>40769_mtr-MIR2111l:mirbase
          Length = 199

 Score = 97.6 bits (49), Expect = 2e-21
 Identities = 61/65 (93%)
 Strand = Plus / Plus

                                                                       
Query: 42  aacaacaaatgcgtaattatatctaagccttggaatgcagattatctcttccttatcacc 101
           ||||||| |||||||||| |||||||||||||| |||| |||||||||||||||||||||
Sbjct: 1   aacaacagatgcgtaattctatctaagccttgggatgctgattatctcttccttatcacc 60

                
Query: 102 aatgc 106
           |||||
Sbjct: 61  aatgc 65



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 18  gataatctgcatcctgaggttta 40
           |||||||||||||||||||||||
Sbjct: 158 gataatctgcatcctgaggttta 180




>40759_mtr-MIR2111b:mirbase
          Length = 166

 Score = 87.7 bits (44), Expect = 2e-18
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                       
Query: 63  tctaagccttggaatgcagattatctcttccttatcaccaatgc 106
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   tctaagccttggaatgcagattatctcttccttatcaccaatgc 49



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 18  gataatctgcatcctgaggttta 40
           |||||||||||||||||||||||
Sbjct: 138 gataatctgcatcctgaggttta 160




>40766_mtr-MIR2111i:mirbase
          Length = 166

 Score = 83.8 bits (42), Expect = 2e-17
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 61  tatctaagccttggaatgcagattatctcttccttatcaccaatgc 106
           |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4   tatctaagccttagaatgcagattatctcttccttatcaccaatgc 49



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 18  gataatctgcatcctgaggttta 40
           |||||||||||||||||||||||
Sbjct: 138 gataatctgcatcctgaggttta 160




>40771_mtr-MIR2111n:mirbase
          Length = 393

 Score = 75.8 bits (38), Expect = 6e-15
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                        
Query: 51 tgcgtaattatatctaagccttggaatgcagattatctcttcctta 96
          ||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 8  tgcgtaattgtatctaagccttggagtgcagattatctcttcctta 53



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 18  gataatctgcatcctgaggttta 40
           |||||||||||||||||||||||
Sbjct: 352 gataatctgcatcctgaggttta 374




>40763_mtr-MIR2111f:mirbase
          Length = 134

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 13 gatgggataatctgcatcctgaggtttagaacaa 46
          ||||||||||||||||||||||||||||||||||
Sbjct: 13 gatgggataatctgcatcctgaggtttagaacaa 46



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 51  tgcgtaattatatctaagccttggaatgcagattatctcttccttatcaccaatgc 106
           ||||||||| | ||||||||||||| || ||||||| | ||||||| || ||||||
Sbjct: 79  tgcgtaattgtttctaagccttggattgtagattattttttccttaacatcaatgc 134




>40775_mtr-MIR2111r:mirbase
          Length = 134

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 63  tctaagccttggaatgcagattatctcttccttatcaccaatgc 106
           ||||||||||||| |||||||||||| |||||||||||| ||||
Sbjct: 91  tctaagccttggagtgcagattatcttttccttatcacctatgc 134



 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 13 gatgggataatctgcatcctgaggtttagaacaa 46
          |||||||||||||||||||||||||||| |||||
Sbjct: 14 gatgggataatctgcatcctgaggtttaaaacaa 47




>40761_mtr-MIR2111d:mirbase
          Length = 152

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                      
Query: 17  ggataatctgcatcctgaggtttagaacaacaaatgcgtaatt 59
           ||||||||||||||||||||||||||| ||||  |||||||||
Sbjct: 110 ggataatctgcatcctgaggtttagaataacagctgcgtaatt 152




>40774_mtr-MIR2111q:mirbase
          Length = 127

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 13  gatgggataatctgcatcctgaggtttagaacaa 46
           |||||||||||||||||||||||||||| |||||
Sbjct: 91  gatgggataatctgcatcctgaggtttaaaacaa 124




>40758_mtr-MIR2111a:mirbase
          Length = 310

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 1   atattgggatttgatgggataatctgcatcctgaggtttag 41
           ||||||||||  |||| ||||||||||||||||||||||||
Sbjct: 270 atattgggatcagatgagataatctgcatcctgaggtttag 310




>40770_mtr-MIR2111m:mirbase
          Length = 132

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 13 gatgggataatctgcatcctgaggttta 40
          ||||||||||||||||||||||||||||
Sbjct: 13 gatgggataatctgcatcctgaggttta 40



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                       
Query: 63  tctaagccttggaatgcagattatctcttccttatcaccaatgc 106
           ||||||||| ||| ||| |||||||| ||||| |||||||||||
Sbjct: 90  tctaagcctcggagtgcggattatcttttcct-atcaccaatgc 132




>40773_mtr-MIR2111p:mirbase
          Length = 107

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 20 taatctgcatcctgaggtttagaacaaca 48
          ||||||||||||||||||||||| |||||
Sbjct: 21 taatctgcatcctgaggtttagagcaaca 49




>40762_mtr-MIR2111e:mirbase
          Length = 102

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 18 gataatctgcatcctgaggtttagaacaa 46
          ||||||||||||||||||||||| |||||
Sbjct: 18 gataatctgcatcctgaggtttataacaa 46




>40776_mtr-MIR2111s:mirbase
          Length = 107

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 20 taatctgcatcctgaggtttagaacaacaaat 51
          ||||||||||||||||||||| ||||| ||||
Sbjct: 21 taatctgcatcctgaggtttaaaacaataaat 52




>41161_tcc-MIR2111:mirbase
          Length = 111

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 taatctgcatcctgaggtttaga 42
          |||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaga 43




>40767_mtr-MIR2111j:mirbase
          Length = 103

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 18 gataatctgcatcctgaggttta 40
          |||||||||||||||||||||||
Sbjct: 18 gataatctgcatcctgaggttta 40




>40647_lja-MIR2111:mirbase
          Length = 153

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 20 taatctgcatcctgaggtttagaacaa 46
          ||||||||||||||||||||| |||||
Sbjct: 42 taatctgcatcctgaggtttaaaacaa 68




>40328_bra-MIR2111b:mirbase
          Length = 113

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 14 taatctgcatcctgaggttta 34




>40327_bra-MIR2111a:mirbase
          Length = 161

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 29 taatctgcatcctgaggttta 49




>40303_bna-MIR2111b:mirbase
          Length = 119

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40




>40302_bna-MIR2111a:mirbase
          Length = 151

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 27 taatctgcatcctgaggttta 47




>40215_ath-MIR2111b:mirbase
          Length = 167

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 45 taatctgcatcctgaggttta 65




>40214_ath-MIR2111a:mirbase
          Length = 159

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 28 taatctgcatcctgaggttta 48




>39947_aly-MIR2111b:mirbase
          Length = 123

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40




>39946_aly-MIR2111a:mirbase
          Length = 141

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 19 taatctgcatcctgaggttta 39




>40764_mtr-MIR2111g:mirbase
          Length = 183

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                       
Query: 63  tctaagccttggaatgcagattatctcttccttatcaccaatgc 106
           ||||||||| ||| ||| |||||||| ||||| |||||||||||
Sbjct: 16  tctaagcctcggagtgcggattatcttttcct-atcaccaatgc 58