miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40768_mtr-MIR2111k:mirbase
Length = 106
Score = 163 bits (82), Expect = 3e-41
Identities = 100/106 (94%)
Strand = Plus / Plus
Query: 1 atattgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaatta 60
||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 atattgggattcgattggataatctgcatcctgaggtttagaacaacagatgcgtaattc 60
Query: 61 tatctaagccttggaatgcagattatctcttccttatcaccaatgc 106
|||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 61 tatctaagccttgggatgctgattatctcttccttatcaccaatgc 106
>40765_mtr-MIR2111h:mirbase
Length = 107
Score = 135 bits (68), Expect = 7e-33
Identities = 95/104 (91%)
Strand = Plus / Plus
Query: 3 attgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaattata 62
|||||||| |||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 3 attgggatcagatgagataatctgcatcctgaggtttagaacaatcgatgcgtaactgta 62
Query: 63 tctaagccttggaatgcagattatctcttccttatcaccaatgc 106
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 63 tctaagccttagaatgcagattatctcttccttatcaccaatgc 106
>40772_mtr-MIR2111o:mirbase
Length = 106
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 17 ggataatctgcatcctgaggtttagaacaacaaatgcgtaattatatctaagccttggaa 76
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct: 17 ggataatctgcatcctgaggtttagaataacagctgcgtaattgtatctaagccttggag 76
Query: 77 tgcagattatctcttccttatcaccaatg 105
|||||||||||||||||||| ||||||||
Sbjct: 77 tgcagattatctcttccttaacaccaatg 105
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 97.6 bits (49), Expect = 2e-21
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 42 aacaacaaatgcgtaattatatctaagccttggaatgcagattatctcttccttatcacc 101
||||||| |||||||||| |||||||||||||| |||| |||||||||||||||||||||
Sbjct: 1 aacaacagatgcgtaattctatctaagccttgggatgctgattatctcttccttatcacc 60
Query: 102 aatgc 106
|||||
Sbjct: 61 aatgc 65
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggttta 40
|||||||||||||||||||||||
Sbjct: 158 gataatctgcatcctgaggttta 180
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 87.7 bits (44), Expect = 2e-18
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 63 tctaagccttggaatgcagattatctcttccttatcaccaatgc 106
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tctaagccttggaatgcagattatctcttccttatcaccaatgc 49
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggttta 40
|||||||||||||||||||||||
Sbjct: 138 gataatctgcatcctgaggttta 160
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 83.8 bits (42), Expect = 2e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 61 tatctaagccttggaatgcagattatctcttccttatcaccaatgc 106
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4 tatctaagccttagaatgcagattatctcttccttatcaccaatgc 49
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggttta 40
|||||||||||||||||||||||
Sbjct: 138 gataatctgcatcctgaggttta 160
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 75.8 bits (38), Expect = 6e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 51 tgcgtaattatatctaagccttggaatgcagattatctcttcctta 96
||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 8 tgcgtaattgtatctaagccttggagtgcagattatctcttcctta 53
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggttta 40
|||||||||||||||||||||||
Sbjct: 352 gataatctgcatcctgaggttta 374
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 13 gatgggataatctgcatcctgaggtttagaacaa 46
||||||||||||||||||||||||||||||||||
Sbjct: 13 gatgggataatctgcatcctgaggtttagaacaa 46
Score = 48.1 bits (24), Expect = 1e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 51 tgcgtaattatatctaagccttggaatgcagattatctcttccttatcaccaatgc 106
||||||||| | ||||||||||||| || ||||||| | ||||||| || ||||||
Sbjct: 79 tgcgtaattgtttctaagccttggattgtagattattttttccttaacatcaatgc 134
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 63.9 bits (32), Expect = 2e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 63 tctaagccttggaatgcagattatctcttccttatcaccaatgc 106
||||||||||||| |||||||||||| |||||||||||| ||||
Sbjct: 91 tctaagccttggagtgcagattatcttttccttatcacctatgc 134
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 13 gatgggataatctgcatcctgaggtttagaacaa 46
|||||||||||||||||||||||||||| |||||
Sbjct: 14 gatgggataatctgcatcctgaggtttaaaacaa 47
>40761_mtr-MIR2111d:mirbase
Length = 152
Score = 61.9 bits (31), Expect = 9e-11
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 17 ggataatctgcatcctgaggtttagaacaacaaatgcgtaatt 59
||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 110 ggataatctgcatcctgaggtttagaataacagctgcgtaatt 152
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 13 gatgggataatctgcatcctgaggtttagaacaa 46
|||||||||||||||||||||||||||| |||||
Sbjct: 91 gatgggataatctgcatcctgaggtttaaaacaa 124
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 1 atattgggatttgatgggataatctgcatcctgaggtttag 41
|||||||||| |||| ||||||||||||||||||||||||
Sbjct: 270 atattgggatcagatgagataatctgcatcctgaggtttag 310
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 gatgggataatctgcatcctgaggttta 40
||||||||||||||||||||||||||||
Sbjct: 13 gatgggataatctgcatcctgaggttta 40
Score = 40.1 bits (20), Expect = 3e-04
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 63 tctaagccttggaatgcagattatctcttccttatcaccaatgc 106
||||||||| ||| ||| |||||||| ||||| |||||||||||
Sbjct: 90 tctaagcctcggagtgcggattatcttttcct-atcaccaatgc 132
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttagaacaaca 48
||||||||||||||||||||||| |||||
Sbjct: 21 taatctgcatcctgaggtttagagcaaca 49
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggtttagaacaa 46
||||||||||||||||||||||| |||||
Sbjct: 18 gataatctgcatcctgaggtttataacaa 46
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttagaacaacaaat 51
||||||||||||||||||||| ||||| ||||
Sbjct: 21 taatctgcatcctgaggtttaaaacaataaat 52
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttaga 42
|||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaga 43
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggttta 40
|||||||||||||||||||||||
Sbjct: 18 gataatctgcatcctgaggttta 40
>40647_lja-MIR2111:mirbase
Length = 153
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttagaacaa 46
||||||||||||||||||||| |||||
Sbjct: 42 taatctgcatcctgaggtttaaaacaa 68
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 14 taatctgcatcctgaggttta 34
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 29 taatctgcatcctgaggttta 49
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 27 taatctgcatcctgaggttta 47
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 45 taatctgcatcctgaggttta 65
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 28 taatctgcatcctgaggttta 48
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 19 taatctgcatcctgaggttta 39
>40764_mtr-MIR2111g:mirbase
Length = 183
Score = 40.1 bits (20), Expect = 3e-04
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 63 tctaagccttggaatgcagattatctcttccttatcaccaatgc 106
||||||||| ||| ||| |||||||| ||||| |||||||||||
Sbjct: 16 tctaagcctcggagtgcggattatcttttcct-atcaccaatgc 58