miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40772_mtr-MIR2111o:mirbase
Length = 106
Score = 117 bits (59), Expect = 2e-27
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 94 atattgagtttggataggataatctgcatcctgaggtttagaataacagctgcgtaatt 152
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atattgagtttggataggataatctgcatcctgaggtttagaataacagctgcgtaatt 59
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 107 bits (54), Expect = 2e-24
Identities = 93/106 (87%)
Strand = Plus / Plus
Query: 29 agtccttgggattcaaattacattttccttaataccaatactaaacacacttatttaatg 88
||||||||||||||||||||||| ||||||| |||||| |||||||||| || || ||||
Sbjct: 205 agtccttgggattcaaattacatcttccttagtaccaacactaaacacaattgttgaatg 264
Query: 89 tggatatattgagtttggataggataatctgcatcctgaggtttag 134
|||||||||| | | ||| ||||||||||||||||||||||||
Sbjct: 265 aggatatattgggatcagatgagataatctgcatcctgaggtttag 310
>40768_mtr-MIR2111k:mirbase
Length = 106
Score = 69.9 bits (35), Expect = 5e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 110 ggataatctgcatcctgaggtttagaataacagctgcgtaatt 152
||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 17 ggataatctgcatcctgaggtttagaacaacagatgcgtaatt 59
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 110 ggataatctgcatcctgaggtttagaataacagctgcgtaatt 152
||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 17 ggataatctgcatcctgaggtttagaacaacaaatgcgtaatt 59
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 105 ggataggataatctgcatcctgaggtttagaa 136
|||| |||||||||||||||||||||||||||
Sbjct: 12 ggatgggataatctgcatcctgaggtttagaa 43
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 54.0 bits (27), Expect = 3e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 21 ttgtatctagtccttgggattcaaattacattttccttaataccaat 67
|||||||||||||| ||||| || ||||| |||| ||||||||||||
Sbjct: 4 ttgtatctagtcctcgggatacagattacttttttcttaataccaat 50
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 92 atatattgagtttggataggataatctgcatcctgaggttta 133
|||||||| || |||| ||||||||||||||||||||||||
Sbjct: 77 atatattgggtgaggatgggataatctgcatcctgaggttta 118
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 105 ggataggataatctgcatcctgaggtttaga 135
||||||| |||||||||||||||||||||||
Sbjct: 13 ggatagggtaatctgcatcctgaggtttaga 43
Score = 54.0 bits (27), Expect = 3e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 21 ttgtatctagtccttgggattcaaattacattttccttaataccaat 67
|||||||||||||| ||||| || ||||| |||| ||||||||||||
Sbjct: 56 ttgtatctagtcctcgggatacagattacttttttcttaataccaat 102
>40765_mtr-MIR2111h:mirbase
Length = 107
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 111 gataatctgcatcctgaggtttagaa 136
||||||||||||||||||||||||||
Sbjct: 18 gataatctgcatcctgaggtttagaa 43
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 105 ggataggataatctgcatcctgaggttta 133
|||| ||||||||||||||||||||||||
Sbjct: 13 ggatgggataatctgcatcctgaggttta 41
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 105 ggataggataatctgcatcctgaggttta 133
|||| ||||||||||||||||||||||||
Sbjct: 12 ggatgggataatctgcatcctgaggttta 40
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 taatctgcatcctgaggtttaga 135
|||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaga 43
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 gataatctgcatcctgaggttta 133
|||||||||||||||||||||||
Sbjct: 352 gataatctgcatcctgaggttta 374
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 gataatctgcatcctgaggttta 133
|||||||||||||||||||||||
Sbjct: 158 gataatctgcatcctgaggttta 180
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 gataatctgcatcctgaggttta 133
|||||||||||||||||||||||
Sbjct: 18 gataatctgcatcctgaggttta 40
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 gataatctgcatcctgaggttta 133
|||||||||||||||||||||||
Sbjct: 138 gataatctgcatcctgaggttta 160
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 gataatctgcatcctgaggttta 133
|||||||||||||||||||||||
Sbjct: 18 gataatctgcatcctgaggttta 40
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 gataatctgcatcctgaggttta 133
|||||||||||||||||||||||
Sbjct: 138 gataatctgcatcctgaggttta 160
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 taatctgcatcctgaggttta 133
|||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggttta 41
Score = 40.1 bits (20), Expect = 5e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 20 attgtatctagtccttgggattcaaattacattttcctta 59
||||||||||||||| ||||| | ||||| |||||||||
Sbjct: 55 attgtatctagtcctcgggatgctgattaccttttcctta 94
>40647_lja-MIR2111:mirbase
Length = 153
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 taatctgcatcctgaggttta 133
|||||||||||||||||||||
Sbjct: 42 taatctgcatcctgaggttta 62
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 taatctgcatcctgaggttta 133
|||||||||||||||||||||
Sbjct: 14 taatctgcatcctgaggttta 34
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 taatctgcatcctgaggttta 133
|||||||||||||||||||||
Sbjct: 29 taatctgcatcctgaggttta 49
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 taatctgcatcctgaggttta 133
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 taatctgcatcctgaggttta 133
|||||||||||||||||||||
Sbjct: 27 taatctgcatcctgaggttta 47
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 taatctgcatcctgaggttta 133
|||||||||||||||||||||
Sbjct: 45 taatctgcatcctgaggttta 65
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 taatctgcatcctgaggttta 133
|||||||||||||||||||||
Sbjct: 28 taatctgcatcctgaggttta 48
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 taatctgcatcctgaggttta 133
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 taatctgcatcctgaggttta 133
|||||||||||||||||||||
Sbjct: 19 taatctgcatcctgaggttta 39
