miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 115 bits (58), Expect = 1e-26
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 1 aattgcgtaatcgtttctaagcctcggagtgcggattatcttttcctatcaccaatgc 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 aattgcgtaatcgtttctaagcctcggagtgcggattatcttttcctatcaccaatgc 132
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 71.9 bits (36), Expect = 2e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 121 ataaatattgggtaaggattagataacctgcattctgaggttta 164
|||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 117 ataaatattgggtaaggattagataatctgcatcctgaggttta 160
Score = 40.1 bits (20), Expect = 6e-04
Identities = 42/48 (87%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 16 tctaagcctcggagtgcggattatcttttcct-atcaccaatgcagaa 62
||||||||| || ||| |||||||| ||||| |||||||||||||||
Sbjct: 6 tctaagccttagaatgcagattatctcttccttatcaccaatgcagaa 53
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 69.9 bits (35), Expect = 6e-13
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 125 atattgggtaaggattagataacctgcattctgaggtttagtgtaatattttagt 179
|||||||||||||||||||||| |||||| |||||||||| | |||||||||||
Sbjct: 1 atattgggtaaggattagataatctgcatcctgaggtttatagcaatattttagt 55
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 123 aaatattgggtaaggattagataacctgcattctgaggttta 164
|||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 139 aaatattgggtaaggattagataatctgcatcctgaggttta 180
Score = 44.1 bits (22), Expect = 4e-05
Identities = 56/66 (84%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 16 tctaagcctcggagtgcggattatcttttcct-atcaccaatgcagaataatgaaatcaa 74
||||||||| || ||| |||||||| ||||| |||||||||||| || ||||||||||
Sbjct: 22 tctaagccttgggatgctgattatctcttccttatcaccaatgcaaaactatgaaatcaa 81
Query: 75 attgat 80
|||||
Sbjct: 82 tttgat 87
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 123 aaatattgggtaaggattagataacctgcattctgaggttta 164
|||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 119 aaatattgggtaaggattagataatctgcatcctgaggttta 160
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 65.9 bits (33), Expect = 1e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 108 tgatggagttagaataaatattgggtaaggattagataacctgcattctgaggttta 164
||||||||| | |||| ||||||||||||||||||||| |||||| ||||||||||
Sbjct: 318 tgatggagtcggtataattattgggtaaggattagataatctgcatcctgaggttta 374
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 63.9 bits (32), Expect = 4e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 8 taatcgtttctaagcctcggagtgcggattatcttttcct 47
||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 83 taatcgtttctaagccttggagtgcagattatcttttcct 122
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 126 tattgggtaaggattagataacctgcattctgaggttta 164
||||||||||||||||||||| |||||| ||||||||||
Sbjct: 2 tattgggtaaggattagataatctgcatcctgaggttta 40
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 3 ttgcgtaatcgtttctaagcctcggagtgcggattatcttttcct 47
||||||||| |||||||||||| ||| || |||||| |||||||
Sbjct: 78 ttgcgtaattgtttctaagccttggattgtagattattttttcct 122
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 6e-04
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 16 tctaagcctcggagtgcggattatcttttcct-atcaccaatgc 58
||||||||| ||| ||| |||||||| ||||| |||||||||||
Sbjct: 63 tctaagccttggaatgcagattatctcttccttatcaccaatgc 106