miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40770_mtr-MIR2111m:mirbase
          Length = 132

 Score =  115 bits (58), Expect = 1e-26
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                     
Query: 1   aattgcgtaatcgtttctaagcctcggagtgcggattatcttttcctatcaccaatgc 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  aattgcgtaatcgtttctaagcctcggagtgcggattatcttttcctatcaccaatgc 132




>40766_mtr-MIR2111i:mirbase
          Length = 166

 Score = 71.9 bits (36), Expect = 2e-13
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                       
Query: 121 ataaatattgggtaaggattagataacctgcattctgaggttta 164
           |||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 117 ataaatattgggtaaggattagataatctgcatcctgaggttta 160



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 42/48 (87%), Gaps = 1/48 (2%)
 Strand = Plus / Plus

                                                          
Query: 16 tctaagcctcggagtgcggattatcttttcct-atcaccaatgcagaa 62
          |||||||||  || ||| |||||||| ||||| |||||||||||||||
Sbjct: 6  tctaagccttagaatgcagattatctcttccttatcaccaatgcagaa 53




>40767_mtr-MIR2111j:mirbase
          Length = 103

 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 125 atattgggtaaggattagataacctgcattctgaggtttagtgtaatattttagt 179
           |||||||||||||||||||||| |||||| ||||||||||  | |||||||||||
Sbjct: 1   atattgggtaaggattagataatctgcatcctgaggtttatagcaatattttagt 55




>40769_mtr-MIR2111l:mirbase
          Length = 199

 Score = 67.9 bits (34), Expect = 3e-12
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                     
Query: 123 aaatattgggtaaggattagataacctgcattctgaggttta 164
           |||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 139 aaatattgggtaaggattagataatctgcatcctgaggttta 180



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 56/66 (84%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 16 tctaagcctcggagtgcggattatcttttcct-atcaccaatgcagaataatgaaatcaa 74
          ||||||||| ||  ||| |||||||| ||||| |||||||||||| ||  ||||||||||
Sbjct: 22 tctaagccttgggatgctgattatctcttccttatcaccaatgcaaaactatgaaatcaa 81

                
Query: 75 attgat 80
           |||||
Sbjct: 82 tttgat 87




>40759_mtr-MIR2111b:mirbase
          Length = 166

 Score = 67.9 bits (34), Expect = 3e-12
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                     
Query: 123 aaatattgggtaaggattagataacctgcattctgaggttta 164
           |||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 119 aaatattgggtaaggattagataatctgcatcctgaggttta 160




>40771_mtr-MIR2111n:mirbase
          Length = 393

 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                    
Query: 108 tgatggagttagaataaatattgggtaaggattagataacctgcattctgaggttta 164
           |||||||||  | |||| ||||||||||||||||||||| |||||| ||||||||||
Sbjct: 318 tgatggagtcggtataattattgggtaaggattagataatctgcatcctgaggttta 374




>40775_mtr-MIR2111r:mirbase
          Length = 134

 Score = 63.9 bits (32), Expect = 4e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 8   taatcgtttctaagcctcggagtgcggattatcttttcct 47
           ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 83  taatcgtttctaagccttggagtgcagattatcttttcct 122




>40762_mtr-MIR2111e:mirbase
          Length = 102

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 126 tattgggtaaggattagataacctgcattctgaggttta 164
           ||||||||||||||||||||| |||||| ||||||||||
Sbjct: 2   tattgggtaaggattagataatctgcatcctgaggttta 40




>40763_mtr-MIR2111f:mirbase
          Length = 134

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 3   ttgcgtaatcgtttctaagcctcggagtgcggattatcttttcct 47
           ||||||||| |||||||||||| ||| ||  |||||| |||||||
Sbjct: 78  ttgcgtaattgtttctaagccttggattgtagattattttttcct 122




>40760_mtr-MIR2111c:mirbase
          Length = 106

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                       
Query: 16  tctaagcctcggagtgcggattatcttttcct-atcaccaatgc 58
           ||||||||| ||| ||| |||||||| ||||| |||||||||||
Sbjct: 63  tctaagccttggaatgcagattatctcttccttatcaccaatgc 106