miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 135 bits (68), Expect = 7e-33
Identities = 95/104 (91%)
Strand = Plus / Plus
Query: 3 attgggatcagatgagataatctgcatcctgaggtttagaacaatcgatgcgtaactgta 62
|||||||| |||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 3 attgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaattata 62
Query: 63 tctaagccttagaatgcagattatctcttccttatcaccaatgc 106
|||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 63 tctaagccttggaatgcagattatctcttccttatcaccaatgc 106
>40768_mtr-MIR2111k:mirbase
Length = 106
Score = 121 bits (61), Expect = 1e-28
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggtttagaacaatcgatgcgtaactgtatctaagccttagaat 77
||||||||||||||||||||||||||||| ||||||||| | |||||||||||| | ||
Sbjct: 18 gataatctgcatcctgaggtttagaacaacagatgcgtaattctatctaagccttgggat 77
Query: 78 gcagattatctcttccttatcaccaatgc 106
|| ||||||||||||||||||||||||||
Sbjct: 78 gctgattatctcttccttatcaccaatgc 106
>40772_mtr-MIR2111o:mirbase
Length = 106
Score = 111 bits (56), Expect = 1e-25
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggtttagaacaatcgatgcgtaactgtatctaagccttagaat 77
|||||||||||||||||||||||||| || | ||||||| |||||||||||||| || |
Sbjct: 18 gataatctgcatcctgaggtttagaataacagctgcgtaattgtatctaagccttggagt 77
Query: 78 gcagattatctcttccttatcaccaatg 105
||||||||||||||||||| ||||||||
Sbjct: 78 gcagattatctcttccttaacaccaatg 105
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 99.6 bits (50), Expect = 4e-22
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 58 ctgtatctaagccttagaatgcagattatctcttccttatcaccaatgca 107
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtatctaagccttagaatgcagattatctcttccttatcaccaatgca 50
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 agataatctgcatcctgaggttta 40
||||||||||||||||||||||||
Sbjct: 137 agataatctgcatcctgaggttta 160
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 83.8 bits (42), Expect = 2e-17
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 58 ctgtatctaagccttagaatgcagattatctcttccttatcaccaatgca 107
|||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtgtctaagccttggaatgcagattatctcttccttatcaccaatgca 50
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 agataatctgcatcctgaggttta 40
||||||||||||||||||||||||
Sbjct: 137 agataatctgcatcctgaggttta 160
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 77.8 bits (39), Expect = 1e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 49 gatgcgtaactgtatctaagccttagaatgcagattatctcttccttatcaccaatgca 107
||||||||| | |||||||||||| | |||| |||||||||||||||||||||||||||
Sbjct: 8 gatgcgtaattctatctaagccttgggatgctgattatctcttccttatcaccaatgca 66
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 agataatctgcatcctgaggttta 40
||||||||||||||||||||||||
Sbjct: 157 agataatctgcatcctgaggttta 180
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 3 attgggatcagatgagataatctgcatcctgaggtttag 41
|||||||||||||||||||||||||||||||||||||||
Sbjct: 272 attgggatcagatgagataatctgcatcctgaggtttag 310
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 67.9 bits (34), Expect = 1e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 51 tgcgtaactgtatctaagccttagaatgcagattatctcttcctta 96
||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 8 tgcgtaattgtatctaagccttggagtgcagattatctcttcctta 53
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 agataatctgcatcctgaggttta 40
||||||||||||||||||||||||
Sbjct: 351 agataatctgcatcctgaggttta 374
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 13 gatgagataatctgcatcctgaggtttagaacaat 47
|||| ||||||||||||||||||||||||||||||
Sbjct: 13 gatgggataatctgcatcctgaggtttagaacaat 47
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 56.0 bits (28), Expect = 5e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 63 tctaagccttagaatgcagattatctcttccttatcaccaatgc 106
|||||||||| || |||||||||||| |||||||||||| ||||
Sbjct: 91 tctaagccttggagtgcagattatcttttccttatcacctatgc 134
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 13 gatgagataatctgcatcctgaggtttagaacaat 47
|||| ||||||||||||||||||||||| ||||||
Sbjct: 14 gatgggataatctgcatcctgaggtttaaaacaat 48
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 13 gatgagataatctgcatcctgaggtttagaacaat 47
|||| ||||||||||||||||||||||| ||||||
Sbjct: 91 gatgggataatctgcatcctgaggtttaaaacaat 125
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 17 agataatctgcatcctgaggtttagaacaat 47
|||||||||||||||||||||||| ||||||
Sbjct: 17 agataatctgcatcctgaggtttataacaat 47
>40761_mtr-MIR2111d:mirbase
Length = 152
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggtttagaa 43
||||||||||||||||||||||||||
Sbjct: 111 gataatctgcatcctgaggtttagaa 136
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttagaacaat 47
||||||||||||||||||||| ||||||
Sbjct: 21 taatctgcatcctgaggtttaaaacaat 48
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 gatgagataatctgcatcctgaggttta 40
|||| |||||||||||||||||||||||
Sbjct: 13 gatgggataatctgcatcctgaggttta 40
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 agataatctgcatcctgaggttta 40
||||||||||||||||||||||||
Sbjct: 17 agataatctgcatcctgaggttta 40
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 ccttagaatgcagattatctcttcctta 96
||||||||||||||||||| |||||||
Sbjct: 66 ccttagaatgcagattatcctttcctta 93
>40647_lja-MIR2111:mirbase
Length = 153
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttagaacaat 47
||||||||||||||||||||| ||||||
Sbjct: 42 taatctgcatcctgaggtttaaaacaat 69
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttaga 42
|||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaga 43
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttaga 42
|||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaga 43
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 14 taatctgcatcctgaggttta 34
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 29 taatctgcatcctgaggttta 49
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 27 taatctgcatcctgaggttta 47
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 45 taatctgcatcctgaggttta 65
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 28 taatctgcatcctgaggttta 48
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 19 taatctgcatcctgaggttta 39
