miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 163 bits (82), Expect = 3e-41
Identities = 100/106 (94%)
Strand = Plus / Plus
Query: 1 atattgggattcgattggataatctgcatcctgaggtttagaacaacagatgcgtaattc 60
||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 atattgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaatta 60
Query: 61 tatctaagccttgggatgctgattatctcttccttatcaccaatgc 106
|||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 61 tatctaagccttggaatgcagattatctcttccttatcaccaatgc 106
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 129 bits (65), Expect = 4e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 42 aacaacagatgcgtaattctatctaagccttgggatgctgattatctcttccttatcacc 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacaacagatgcgtaattctatctaagccttgggatgctgattatctcttccttatcacc 60
Query: 102 aatgc 106
|||||
Sbjct: 61 aatgc 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 gattggataatctgcatcctgaggttta 40
|||| |||||||||||||||||||||||
Sbjct: 153 gattagataatctgcatcctgaggttta 180
>40772_mtr-MIR2111o:mirbase
Length = 106
Score = 121 bits (61), Expect = 1e-28
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 17 ggataatctgcatcctgaggtttagaacaacagatgcgtaattctatctaagccttggga 76
||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 17 ggataatctgcatcctgaggtttagaataacagctgcgtaattgtatctaagccttggag 76
Query: 77 tgctgattatctcttccttatcaccaatg 105
||| |||||||||||||||| ||||||||
Sbjct: 77 tgcagattatctcttccttaacaccaatg 105
>40765_mtr-MIR2111h:mirbase
Length = 107
Score = 121 bits (61), Expect = 1e-28
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 18 gataatctgcatcctgaggtttagaacaacagatgcgtaattctatctaagccttgggat 77
||||||||||||||||||||||||||||| ||||||||| | |||||||||||| | ||
Sbjct: 18 gataatctgcatcctgaggtttagaacaatcgatgcgtaactgtatctaagccttagaat 77
Query: 78 gctgattatctcttccttatcaccaatgc 106
|| ||||||||||||||||||||||||||
Sbjct: 78 gcagattatctcttccttatcaccaatgc 106
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 71.9 bits (36), Expect = 9e-14
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 63 tctaagccttgggatgctgattatctcttccttatcaccaatgc 106
|||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 6 tctaagccttggaatgcagattatctcttccttatcaccaatgc 49
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 gattggataatctgcatcctgaggttta 40
|||| |||||||||||||||||||||||
Sbjct: 133 gattagataatctgcatcctgaggttta 160
>40761_mtr-MIR2111d:mirbase
Length = 152
Score = 69.9 bits (35), Expect = 4e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 17 ggataatctgcatcctgaggtttagaacaacagatgcgtaatt 59
||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 110 ggataatctgcatcctgaggtttagaataacagctgcgtaatt 152
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 67.9 bits (34), Expect = 1e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 61 tatctaagccttgggatgctgattatctcttccttatcaccaatgc 106
|||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct: 4 tatctaagccttagaatgcagattatctcttccttatcaccaatgc 49
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 gattggataatctgcatcctgaggttta 40
|||| |||||||||||||||||||||||
Sbjct: 133 gattagataatctgcatcctgaggttta 160
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 63.9 bits (32), Expect = 2e-11
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 45 aacagatgcgtaattctatctaagccttgggatgctgattatctcttcctta 96
||||| ||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct: 2 aacagctgcgtaattgtatctaagccttggagtgcagattatctcttcctta 53
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 gattggataatctgcatcctgaggttta 40
|||| |||||||||||||||||||||||
Sbjct: 347 gattagataatctgcatcctgaggttta 374
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 17 ggataatctgcatcctgaggtttagaacaa 46
||||||||||||||||||||||||||||||
Sbjct: 17 ggataatctgcatcctgaggtttagaacaa 46
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 56.0 bits (28), Expect = 5e-09
Identities = 72/86 (83%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttagaacaacagatgcgtaattctatctaagccttgggatgc 79
||||||||||||||||||||| ||||| | || | ||| |||||| ||| |||||||
Sbjct: 21 taatctgcatcctgaggtttaaaacaataaat---ttattgtatctagtcctcgggatgc 77
Query: 80 tgattatctcttccttatcaccaatg 105
|||||| || |||||||| |||||||
Sbjct: 78 tgattaccttttccttatgaccaatg 103
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 54.0 bits (27), Expect = 2e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 17 ggataatctgcatcctgaggtttagaacaacagatgcgtaatt 59
|||||||||||||||||||||||| ||||| || | |||||||
Sbjct: 18 ggataatctgcatcctgaggtttaaaacaatagttacgtaatt 60
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 63 tctaagccttgggatgctgattatctcttccttatcaccaatgc 106
|||||||||||| ||| |||||||| |||||||||||| ||||
Sbjct: 91 tctaagccttggagtgcagattatcttttccttatcacctatgc 134
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 17 ggataatctgcatcctgaggtttagaacaa 46
|||||||||||||||||||||||| |||||
Sbjct: 95 ggataatctgcatcctgaggtttaaaacaa 124
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 13 gattggataatctgcatcctgaggtttagaacaa 46
|||| ||||||||||||||||||||||| |||||
Sbjct: 13 gattagataatctgcatcctgaggtttataacaa 46
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttagaacaaca 48
||||||||||||||||||||||| |||||
Sbjct: 21 taatctgcatcctgaggtttagagcaaca 49
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1 atattgggattcgattggataatctgcatcctgaggtttag 41
|||||||||| ||| ||||||||||||||||||||||||
Sbjct: 270 atattgggatcagatgagataatctgcatcctgaggtttag 310
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 ggataatctgcatcctgaggttta 40
||||||||||||||||||||||||
Sbjct: 17 ggataatctgcatcctgaggttta 40
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 gattggataatctgcatcctgaggttta 40
|||| |||||||||||||||||||||||
Sbjct: 13 gattagataatctgcatcctgaggttta 40
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttaga 42
|||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaga 43
>40647_lja-MIR2111:mirbase
Length = 153
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttagaacaa 46
||||||||||||||||||||| |||||
Sbjct: 42 taatctgcatcctgaggtttaaaacaa 68
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 14 taatctgcatcctgaggttta 34
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 29 taatctgcatcctgaggttta 49
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 27 taatctgcatcctgaggttta 47
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 45 taatctgcatcctgaggttta 65
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 28 taatctgcatcctgaggttta 48
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 19 taatctgcatcctgaggttta 39