miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40760_mtr-MIR2111c:mirbase
          Length = 106

 Score =  163 bits (82), Expect = 3e-41
 Identities = 100/106 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattgggattcgattggataatctgcatcctgaggtttagaacaacagatgcgtaattc 60
           ||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 1   atattgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaatta 60

                                                         
Query: 61  tatctaagccttgggatgctgattatctcttccttatcaccaatgc 106
           |||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 61  tatctaagccttggaatgcagattatctcttccttatcaccaatgc 106




>40769_mtr-MIR2111l:mirbase
          Length = 199

 Score =  129 bits (65), Expect = 4e-31
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                       
Query: 42  aacaacagatgcgtaattctatctaagccttgggatgctgattatctcttccttatcacc 101
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aacaacagatgcgtaattctatctaagccttgggatgctgattatctcttccttatcacc 60

                
Query: 102 aatgc 106
           |||||
Sbjct: 61  aatgc 65



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 13  gattggataatctgcatcctgaggttta 40
           |||| |||||||||||||||||||||||
Sbjct: 153 gattagataatctgcatcctgaggttta 180




>40772_mtr-MIR2111o:mirbase
          Length = 106

 Score =  121 bits (61), Expect = 1e-28
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                       
Query: 17  ggataatctgcatcctgaggtttagaacaacagatgcgtaattctatctaagccttggga 76
           ||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||  
Sbjct: 17  ggataatctgcatcctgaggtttagaataacagctgcgtaattgtatctaagccttggag 76

                                        
Query: 77  tgctgattatctcttccttatcaccaatg 105
           ||| |||||||||||||||| ||||||||
Sbjct: 77  tgcagattatctcttccttaacaccaatg 105




>40765_mtr-MIR2111h:mirbase
          Length = 107

 Score =  121 bits (61), Expect = 1e-28
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                       
Query: 18  gataatctgcatcctgaggtttagaacaacagatgcgtaattctatctaagccttgggat 77
           |||||||||||||||||||||||||||||  ||||||||| | |||||||||||| | ||
Sbjct: 18  gataatctgcatcctgaggtttagaacaatcgatgcgtaactgtatctaagccttagaat 77

                                        
Query: 78  gctgattatctcttccttatcaccaatgc 106
           || ||||||||||||||||||||||||||
Sbjct: 78  gcagattatctcttccttatcaccaatgc 106




>40759_mtr-MIR2111b:mirbase
          Length = 166

 Score = 71.9 bits (36), Expect = 9e-14
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                       
Query: 63  tctaagccttgggatgctgattatctcttccttatcaccaatgc 106
           |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 6   tctaagccttggaatgcagattatctcttccttatcaccaatgc 49



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 13  gattggataatctgcatcctgaggttta 40
           |||| |||||||||||||||||||||||
Sbjct: 133 gattagataatctgcatcctgaggttta 160




>40761_mtr-MIR2111d:mirbase
          Length = 152

 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                      
Query: 17  ggataatctgcatcctgaggtttagaacaacagatgcgtaatt 59
           ||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 110 ggataatctgcatcctgaggtttagaataacagctgcgtaatt 152




>40766_mtr-MIR2111i:mirbase
          Length = 166

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                         
Query: 61  tatctaagccttgggatgctgattatctcttccttatcaccaatgc 106
           |||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct: 4   tatctaagccttagaatgcagattatctcttccttatcaccaatgc 49



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 13  gattggataatctgcatcctgaggttta 40
           |||| |||||||||||||||||||||||
Sbjct: 133 gattagataatctgcatcctgaggttta 160




>40771_mtr-MIR2111n:mirbase
          Length = 393

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                              
Query: 45 aacagatgcgtaattctatctaagccttgggatgctgattatctcttcctta 96
          ||||| ||||||||| ||||||||||||||  ||| ||||||||||||||||
Sbjct: 2  aacagctgcgtaattgtatctaagccttggagtgcagattatctcttcctta 53



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 13  gattggataatctgcatcctgaggttta 40
           |||| |||||||||||||||||||||||
Sbjct: 347 gattagataatctgcatcctgaggttta 374




>40763_mtr-MIR2111f:mirbase
          Length = 134

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 17 ggataatctgcatcctgaggtttagaacaa 46
          ||||||||||||||||||||||||||||||
Sbjct: 17 ggataatctgcatcctgaggtttagaacaa 46




>40776_mtr-MIR2111s:mirbase
          Length = 107

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 72/86 (83%), Gaps = 3/86 (3%)
 Strand = Plus / Plus

                                                                       
Query: 20  taatctgcatcctgaggtttagaacaacagatgcgtaattctatctaagccttgggatgc 79
           ||||||||||||||||||||| ||||| | ||   | ||| ||||||  ||| |||||||
Sbjct: 21  taatctgcatcctgaggtttaaaacaataaat---ttattgtatctagtcctcgggatgc 77

                                     
Query: 80  tgattatctcttccttatcaccaatg 105
           |||||| || |||||||| |||||||
Sbjct: 78  tgattaccttttccttatgaccaatg 103




>40775_mtr-MIR2111r:mirbase
          Length = 134

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                     
Query: 17 ggataatctgcatcctgaggtttagaacaacagatgcgtaatt 59
          |||||||||||||||||||||||| ||||| || | |||||||
Sbjct: 18 ggataatctgcatcctgaggtttaaaacaatagttacgtaatt 60



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 63  tctaagccttgggatgctgattatctcttccttatcaccaatgc 106
           ||||||||||||  ||| |||||||| |||||||||||| ||||
Sbjct: 91  tctaagccttggagtgcagattatcttttccttatcacctatgc 134




>40774_mtr-MIR2111q:mirbase
          Length = 127

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 17  ggataatctgcatcctgaggtttagaacaa 46
           |||||||||||||||||||||||| |||||
Sbjct: 95  ggataatctgcatcctgaggtttaaaacaa 124




>40762_mtr-MIR2111e:mirbase
          Length = 102

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 13 gattggataatctgcatcctgaggtttagaacaa 46
          |||| ||||||||||||||||||||||| |||||
Sbjct: 13 gattagataatctgcatcctgaggtttataacaa 46




>40773_mtr-MIR2111p:mirbase
          Length = 107

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 20 taatctgcatcctgaggtttagaacaaca 48
          ||||||||||||||||||||||| |||||
Sbjct: 21 taatctgcatcctgaggtttagagcaaca 49




>40758_mtr-MIR2111a:mirbase
          Length = 310

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 1   atattgggattcgattggataatctgcatcctgaggtttag 41
           ||||||||||  |||  ||||||||||||||||||||||||
Sbjct: 270 atattgggatcagatgagataatctgcatcctgaggtttag 310




>40770_mtr-MIR2111m:mirbase
          Length = 132

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 ggataatctgcatcctgaggttta 40
          ||||||||||||||||||||||||
Sbjct: 17 ggataatctgcatcctgaggttta 40




>40767_mtr-MIR2111j:mirbase
          Length = 103

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 13 gattggataatctgcatcctgaggttta 40
          |||| |||||||||||||||||||||||
Sbjct: 13 gattagataatctgcatcctgaggttta 40




>41161_tcc-MIR2111:mirbase
          Length = 111

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 taatctgcatcctgaggtttaga 42
          |||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaga 43




>40647_lja-MIR2111:mirbase
          Length = 153

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 20 taatctgcatcctgaggtttagaacaa 46
          ||||||||||||||||||||| |||||
Sbjct: 42 taatctgcatcctgaggtttaaaacaa 68




>40328_bra-MIR2111b:mirbase
          Length = 113

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 14 taatctgcatcctgaggttta 34




>40327_bra-MIR2111a:mirbase
          Length = 161

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 29 taatctgcatcctgaggttta 49




>40303_bna-MIR2111b:mirbase
          Length = 119

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40




>40302_bna-MIR2111a:mirbase
          Length = 151

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 27 taatctgcatcctgaggttta 47




>40215_ath-MIR2111b:mirbase
          Length = 167

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 45 taatctgcatcctgaggttta 65




>40214_ath-MIR2111a:mirbase
          Length = 159

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 28 taatctgcatcctgaggttta 48




>39947_aly-MIR2111b:mirbase
          Length = 123

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40




>39946_aly-MIR2111a:mirbase
          Length = 141

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 taatctgcatcctgaggttta 40
          |||||||||||||||||||||
Sbjct: 19 taatctgcatcctgaggttta 39