miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 129 bits (65), Expect = 6e-31
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 1 atattgggtgaggatgggataatctgcatcctgaggtttaagacaatatttgcgtaattt 60
||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||
Sbjct: 2 atattgggtgaggatgggataatctgcatcctgaggtttaaaacaatagttacgtaatta 61
Query: 61 ccaaaaaataaataaattgcgtaatcgtttctaagcctcggagtgcggattatcttttcc 120
|| ||| |||| | || | ||||||||||||||||| ||||||| |||||||||||||
Sbjct: 62 cccctaaaaaaattagttacataatcgtttctaagccttggagtgcagattatcttttcc 121
Query: 121 t 121
|
Sbjct: 122 t 122
>40764_mtr-MIR2111g:mirbase
Length = 183
Score = 115 bits (58), Expect = 8e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 75 aattgcgtaatcgtttctaagcctcggagtgcggattatcttttcctatcaccaatgc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aattgcgtaatcgtttctaagcctcggagtgcggattatcttttcctatcaccaatgc 58
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 87.7 bits (44), Expect = 2e-18
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 1 atattgggtgaggatgggataatctgcatcctgaggtttaagacaata 48
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 79 atattgggtgaggatgggataatctgcatcctgaggtttaaaacaata 126
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 83.8 bits (42), Expect = 3e-17
Identities = 103/122 (84%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 1 atattgggtgaggatgggataatctgcatcctgaggtttaagacaatatttgcgtaattt 60
|||||||||| ||||||||||||||||||||||||||||| |||||| || | | ||||
Sbjct: 1 atattgggtggggatgggataatctgcatcctgaggtttagaacaatagtttcttcattt 60
Query: 61 cc-aaaaaataaataaattgcgtaatcgtttctaagcctcggagtgcggattatcttttc 119
|| ||||| ||| | ||||||||| |||||||||||| ||| || |||||| |||||
Sbjct: 61 ccttaaaaagaaaatagttgcgtaattgtttctaagccttggattgtagattattttttc 120
Query: 120 ct 121
||
Sbjct: 121 ct 122
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 60.0 bits (30), Expect = 4e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1 atattgggtgaggatgggataatctgcatcctgaggtttaagacaatatt 50
||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct: 141 atattgggtaaggattagataatctgcatcctgaggtttaaagcaatatt 190
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 60.0 bits (30), Expect = 4e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 2 tattgggtgaggatgggataatctgcatcctgaggtttaagacaatattt 51
|||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 2 tattgggtaaggattagataatctgcatcctgaggtttataacaatattt 51
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1 atattgggtgaggatgggataatctgcatcctgaggttta 40
||||||||| ||||| |||||||||||||||||||||||
Sbjct: 1 atattgggtaaggattagataatctgcatcctgaggttta 40
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1 atattgggtgaggatgggataatctgcatcctgaggttta 40
||||||||| ||||| |||||||||||||||||||||||
Sbjct: 121 atattgggtaaggattagataatctgcatcctgaggttta 160
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 gatgggataatctgcatcctgaggttta 40
||||||||||||||||||||||||||||
Sbjct: 13 gatgggataatctgcatcctgaggttta 40
Score = 40.1 bits (20), Expect = 4e-04
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 90 tctaagcctcggagtgcggattatcttttcct-atcaccaatgc 132
||||||||| ||| ||| |||||||| ||||| |||||||||||
Sbjct: 63 tctaagccttggaatgcagattatctcttccttatcaccaatgc 106
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1 atattgggtgaggatgggataatctgcatcctgaggttta 40
||||||||| ||||| |||||||||||||||||||||||
Sbjct: 121 atattgggtaaggattagataatctgcatcctgaggttta 160
Score = 40.1 bits (20), Expect = 4e-04
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 90 tctaagcctcggagtgcggattatcttttcct-atcaccaatgc 132
||||||||| ||| ||| |||||||| ||||| |||||||||||
Sbjct: 6 tctaagccttggaatgcagattatctcttccttatcaccaatgc 49
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 2 tattgggtgaggatgggataatctgcatcctgaggttta 40
|||||||| ||||| |||||||||||||||||||||||
Sbjct: 336 tattgggtaaggattagataatctgcatcctgaggttta 374
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 7 ggtgaggatgggataatctgcatcctgaggtttaa 41
||||||||| || ||||||||||||||||||||||
Sbjct: 6 ggtgaggatcgggtaatctgcatcctgaggtttaa 40
>41698_vvi-MIR2111:mirbase
Length = 108
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1 atattgggtgaggatgggataatctgcatcctgaggt 37
||||||||| ||||| || ||||||||||||||||||
Sbjct: 4 atattgggtcaggatcgggtaatctgcatcctgaggt 40
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttaagacaata 48
|||||||||||||||||||||| ||||||
Sbjct: 21 taatctgcatcctgaggtttaaaacaata 49
>40772_mtr-MIR2111o:mirbase
Length = 106
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 ggatgggataatctgcatcctgaggttta 40
|||| ||||||||||||||||||||||||
Sbjct: 12 ggataggataatctgcatcctgaggttta 40
>40761_mtr-MIR2111d:mirbase
Length = 152
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 ggatgggataatctgcatcctgaggttta 40
|||| ||||||||||||||||||||||||
Sbjct: 105 ggataggataatctgcatcctgaggttta 133
>40647_lja-MIR2111:mirbase
Length = 153
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttaagacaata 48
|||||||||||||||||||||| ||||||
Sbjct: 42 taatctgcatcctgaggtttaaaacaata 70
>40768_mtr-MIR2111k:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 ggataatctgcatcctgaggttta 40
||||||||||||||||||||||||
Sbjct: 17 ggataatctgcatcctgaggttta 40
>40765_mtr-MIR2111h:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 gatgggataatctgcatcctgaggttta 40
|||| |||||||||||||||||||||||
Sbjct: 13 gatgagataatctgcatcctgaggttta 40
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 gatgggataatctgcatcctgaggttta 40
|||| |||||||||||||||||||||||
Sbjct: 282 gatgagataatctgcatcctgaggttta 309
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 7 ggtgaggatgggataatctgcatcctgaggtttaa 41
|||||||| || ||||||||||||||||||||||
Sbjct: 16 ggtgaggaccgggtaatctgcatcctgaggtttaa 50
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 7 ggtgaggatgggataatctgcatcctgaggtttaa 41
|||||||| || ||||||||||||||||||||||
Sbjct: 14 ggtgaggaccgggtaatctgcatcctgaggtttaa 48
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 7 ggtgaggatgggataatctgcatcctgaggtttaa 41
|||||||| || ||||||||||||||||||||||
Sbjct: 15 ggtgaggaccgggtaatctgcatcctgaggtttaa 49
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 aggatgggataatctgcatcctgaggttta 40
||||| || |||||||||||||||||||||
Sbjct: 12 aggatagggtaatctgcatcctgaggttta 41
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttaa 41
||||||||||||||||||||||
Sbjct: 14 taatctgcatcctgaggtttaa 35
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttaa 41
||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaa 41
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttaa 41
||||||||||||||||||||||
Sbjct: 45 taatctgcatcctgaggtttaa 66
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggtttaa 41
||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaa 41
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 taatctgcatcctgaggttta 40
|||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggttta 41
