miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 127 bits (64), Expect = 7e-30
Identities = 97/108 (89%)
Strand = Plus / Plus
Query: 285 gtttccattttcctttagagcaataagtcttcttgatggagtcggtataattattgggta 344
||||||||||| | ||||||||||| ||| || |||| || | |||| || |||||||||
Sbjct: 91 gtttccattttacattagagcaatatgtcgtcatgatagaattggtagaaatattgggta 150
Query: 345 aggattagataatctgcatcctgaggtttatagcaatattgtagttgt 392
|||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 151 aggattagataatctgcatcctgaggtttaaagcaatattgtagttgt 198
Score = 63.9 bits (32), Expect = 9e-11
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 2 aacagctgcgtaattgtatctaagccttggagtgcagattatctcttcctta 53
||||| ||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct: 4 aacagatgcgtaattctatctaagccttgggatgctgattatctcttcctta 55
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 127 bits (64), Expect = 7e-30
Identities = 88/96 (91%)
Strand = Plus / Plus
Query: 285 gtttccattttcctttagagcaataagtcttcttgatggagtcggtataattattgggta 344
|||||||||||| ||||||| ||| ||| || |||||||||||||| || |||||||||
Sbjct: 71 gtttccattttctattagagctatatgtcgtcatgatggagtcggtagaaatattgggta 130
Query: 345 aggattagataatctgcatcctgaggtttatagcaa 380
||||||||||||||||||||||||||||||||||||
Sbjct: 131 aggattagataatctgcatcctgaggtttatagcaa 166
Score = 60.0 bits (30), Expect = 1e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 20 tctaagccttggagtgcagattatctcttcctta 53
||||||||||||| ||||||||||||||||||||
Sbjct: 6 tctaagccttggaatgcagattatctcttcctta 39
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 119 bits (60), Expect = 2e-27
Identities = 87/96 (90%)
Strand = Plus / Plus
Query: 285 gtttccattttcctttagagcaataagtcttcttgatggagtcggtataattattgggta 344
||||||||||||| |||||||||| ||| | | ||| ||||||||||| |||||||||
Sbjct: 71 gtttccattttccaatagagcaataggtcgccattatgtagtcggtataaatattgggta 130
Query: 345 aggattagataatctgcatcctgaggtttatagcaa 380
||||||||||||||||||||||||||||||||||||
Sbjct: 131 aggattagataatctgcatcctgaggtttatagcaa 166
Score = 60.0 bits (30), Expect = 1e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 16 tgtatctaagccttggagtgcagattatctcttcctta 53
|||||||||||||| || ||||||||||||||||||||
Sbjct: 2 tgtatctaagccttagaatgcagattatctcttcctta 39
>40772_mtr-MIR2111o:mirbase
Length = 106
Score = 113 bits (57), Expect = 1e-25
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 taacagctgcgtaattgtatctaagccttggagtgcagattatctcttccttaaccccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 44 taacagctgcgtaattgtatctaagccttggagtgcagattatctcttccttaacaccaa 103
Query: 61 t 61
|
Sbjct: 104 t 104
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 352 gataatctgcatcctgaggttta 374
|||||||||||||||||||||||
Sbjct: 18 gataatctgcatcctgaggttta 40
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 105 bits (53), Expect = 3e-23
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 336 tattgggtaaggattagataatctgcatcctgaggtttatagcaatattgtagttgt 392
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2 tattgggtaaggattagataatctgcatcctgaggtttatagcaatattttagttgt 58
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 91.7 bits (46), Expect = 4e-19
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 335 ttattgggtaaggattagataatctgcatcctgaggtttatagcaatatt 384
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 ttattgggtaaggattagataatctgcatcctgaggtttataacaatatt 50
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 75.8 bits (38), Expect = 2e-14
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 8 tgcgtaattgtatctaagccttggagtgcagattatctcttcctta 53
||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 51 tgcgtaattatatctaagccttggaatgcagattatctcttcctta 96
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 352 gataatctgcatcctgaggttta 374
|||||||||||||||||||||||
Sbjct: 18 gataatctgcatcctgaggttta 40
>40765_mtr-MIR2111h:mirbase
Length = 107
Score = 67.9 bits (34), Expect = 6e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 8 tgcgtaattgtatctaagccttggagtgcagattatctcttcctta 53
||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 51 tgcgtaactgtatctaagccttagaatgcagattatctcttcctta 96
Score = 48.1 bits (24), Expect = 5e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 351 agataatctgcatcctgaggttta 374
||||||||||||||||||||||||
Sbjct: 17 agataatctgcatcctgaggttta 40
>40764_mtr-MIR2111g:mirbase
Length = 183
Score = 65.9 bits (33), Expect = 2e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 318 tgatggagtcggtataattattgggtaaggattagataatctgcatcctgaggttta 374
||||||||| | |||| ||||||||||||||||||||| |||||| ||||||||||
Sbjct: 108 tgatggagttagaataaatattgggtaaggattagataacctgcattctgaggttta 164
>40768_mtr-MIR2111k:mirbase
Length = 106
Score = 63.9 bits (32), Expect = 9e-11
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 2 aacagctgcgtaattgtatctaagccttggagtgcagattatctcttcctta 53
||||| ||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct: 45 aacagatgcgtaattctatctaagccttgggatgctgattatctcttcctta 96
Score = 48.1 bits (24), Expect = 5e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 347 gattagataatctgcatcctgaggttta 374
|||| |||||||||||||||||||||||
Sbjct: 13 gattggataatctgcatcctgaggttta 40
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 60.0 bits (30), Expect = 1e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 20 tctaagccttggagtgcagattatctcttcctta 53
|||||||||||||||||||||||||| |||||||
Sbjct: 91 tctaagccttggagtgcagattatcttttcctta 124
Score = 54.0 bits (27), Expect = 9e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 336 tattgggtaaggattagataatctgcatcctgaggttta 374
|||||||| ||||| |||||||||||||||||||||||
Sbjct: 3 tattgggtgaggatgggataatctgcatcctgaggttta 41
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 56.0 bits (28), Expect = 2e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 8 tgcgtaattgtatctaagccttggagtgcagattatctcttccttaac 55
||||||||||| ||||||||||||| || ||||||| | |||||||||
Sbjct: 79 tgcgtaattgtttctaagccttggattgtagattattttttccttaac 126
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 352 gataatctgcatcctgaggttta 374
|||||||||||||||||||||||
Sbjct: 18 gataatctgcatcctgaggttta 40
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 54.0 bits (27), Expect = 9e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 336 tattgggtaaggattagataatctgcatcctgaggttta 374
|||||||| ||||| |||||||||||||||||||||||
Sbjct: 80 tattgggtgaggatgggataatctgcatcctgaggttta 118
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 54.0 bits (27), Expect = 9e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 336 tattgggtaaggattagataatctgcatcctgaggttta 374
|||||||| ||||| |||||||||||||||||||||||
Sbjct: 2 tattgggtgaggatgggataatctgcatcctgaggttta 40
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 5e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 337 attgggtaaggattagataatctgcatcctgaggtttatagcaa 380
||||| ||||||| | ||||||||||||||||||||| |||||
Sbjct: 4 attggttaaggatagggtaatctgcatcctgaggtttagagcaa 47
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 48.1 bits (24), Expect = 5e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 351 agataatctgcatcctgaggttta 374
||||||||||||||||||||||||
Sbjct: 286 agataatctgcatcctgaggttta 309
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 2e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 336 tattgggtaaggattagataatctgcatcctgaggttta 374
|||||| ||||||| | |||||||||||||||||||||
Sbjct: 3 tattggttaaggatccggtaatctgcatcctgaggttta 41
>40761_mtr-MIR2111d:mirbase
Length = 152
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 352 gataatctgcatcctgaggttta 374
|||||||||||||||||||||||
Sbjct: 111 gataatctgcatcctgaggttta 133
>40647_lja-MIR2111:mirbase
Length = 153
Score = 44.1 bits (22), Expect = 8e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 345 aggattagataatctgcatcctgaggttta 374
||||| || |||||||||||||||||||||
Sbjct: 33 aggatcaggtaatctgcatcctgaggttta 62
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 354 taatctgcatcctgaggttta 374
|||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggttta 41
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 354 taatctgcatcctgaggttta 374
|||||||||||||||||||||
Sbjct: 14 taatctgcatcctgaggttta 34
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 354 taatctgcatcctgaggttta 374
|||||||||||||||||||||
Sbjct: 29 taatctgcatcctgaggttta 49
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 354 taatctgcatcctgaggttta 374
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 354 taatctgcatcctgaggttta 374
|||||||||||||||||||||
Sbjct: 27 taatctgcatcctgaggttta 47
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 354 taatctgcatcctgaggttta 374
|||||||||||||||||||||
Sbjct: 45 taatctgcatcctgaggttta 65
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 354 taatctgcatcctgaggttta 374
|||||||||||||||||||||
Sbjct: 28 taatctgcatcctgaggttta 48
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 354 taatctgcatcctgaggttta 374
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 354 taatctgcatcctgaggttta 374
|||||||||||||||||||||
Sbjct: 19 taatctgcatcctgaggttta 39
