miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 109 bits (55), Expect = 4e-25
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 53 gtgttgtatctagtcctcgggatacagattacttttttcttaataccaatgtgaa 107
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgttgtatctagtcctcgggatacagattacttttttcttaataccaatgtgaa 55
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 aggatagggtaatctgcatcctgaggttta 41
||||| || |||||||||||||||||||||
Sbjct: 89 aggatgggataatctgcatcctgaggttta 118
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 81.8 bits (41), Expect = 9e-17
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 4 attggttaaggatagggtaatctgcatcctgaggtttagagcaacatttgtgttgtatct 63
||||||||||||| ||||||||||||||||||||||| | ||| | | | ||||||||
Sbjct: 4 attggttaaggatccggtaatctgcatcctgaggtttaaaacaataaatttattgtatct 63
Query: 64 agtcctcgggatacagattacttttttcttaataccaatgt 104
|||||||||||| | |||||| |||| |||| ||||||||
Sbjct: 64 agtcctcgggatgctgattaccttttccttatgaccaatgt 104
>40772_mtr-MIR2111o:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 13 ggatagggtaatctgcatcctgaggtttaga 43
||||||| |||||||||||||||||||||||
Sbjct: 12 ggataggataatctgcatcctgaggtttaga 42
>40761_mtr-MIR2111d:mirbase
Length = 152
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 56 ttgtatctagtcctcgggatacagattacttttttcttaataccaat 102
|||||||||||||| ||||| || ||||| |||| ||||||||||||
Sbjct: 21 ttgtatctagtccttgggattcaaattacattttccttaataccaat 67
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 13 ggatagggtaatctgcatcctgaggtttaga 43
||||||| |||||||||||||||||||||||
Sbjct: 105 ggataggataatctgcatcctgaggtttaga 135
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 18 gggtaatctgcatcctgaggtttaga 43
||||||||||||||||||||||||||
Sbjct: 18 gggtaatctgcatcctgaggtttaga 43
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 aggatagggtaatctgcatcctgaggttta 41
||||| ||||||||||||||||||||||||
Sbjct: 10 aggatcgggtaatctgcatcctgaggttta 39
>40768_mtr-MIR2111k:mirbase
Length = 106
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttagagcaaca 49
||||||||||||||||||||||| |||||
Sbjct: 20 taatctgcatcctgaggtttagaacaaca 48
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 4 attggttaaggatagggtaatctgcatcctgaggtttagagcaacattt 52
||||| ||||||| | ||||||||||||||||||||| ||||| ||||
Sbjct: 3 attgggtaaggattagataatctgcatcctgaggtttatagcaatattt 51
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttagagcaaca 49
||||||||||||||||||||||| |||||
Sbjct: 20 taatctgcatcctgaggtttagaacaaca 48
>41698_vvi-MIR2111:mirbase
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 aggatagggtaatctgcatcctgaggtttaga 43
||||| ||||||||||||||||||||| ||||
Sbjct: 14 aggatcgggtaatctgcatcctgaggtctaga 45
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 4 attggttaaggatagggtaatctgcatcctgaggtttagagcaa 47
||||| ||||||| | ||||||||||||||||||||| |||||
Sbjct: 337 attgggtaaggattagataatctgcatcctgaggtttatagcaa 380
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 4 attggttaaggatagggtaatctgcatcctgaggtttagagcaa 47
||||| ||||||| | ||||||||||||||||||||| |||||
Sbjct: 143 attgggtaaggattagataatctgcatcctgaggtttaaagcaa 186
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 4 attggttaaggatagggtaatctgcatcctgaggtttagagcaa 47
||||| ||||||| | ||||||||||||||||||||| |||||
Sbjct: 123 attgggtaaggattagataatctgcatcctgaggtttatagcaa 166
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 4 attggttaaggatagggtaatctgcatcctgaggtttagagcaa 47
||||| ||||||| | ||||||||||||||||||||| |||||
Sbjct: 123 attgggtaaggattagataatctgcatcctgaggtttatagcaa 166
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 gggtaatctgcatcctgaggttta 41
||||||||||||||||||||||||
Sbjct: 26 gggtaatctgcatcctgaggttta 49
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 gggtaatctgcatcctgaggttta 41
||||||||||||||||||||||||
Sbjct: 24 gggtaatctgcatcctgaggttta 47
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 gggtaatctgcatcctgaggttta 41
||||||||||||||||||||||||
Sbjct: 42 gggtaatctgcatcctgaggttta 65
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 gggtaatctgcatcctgaggttta 41
||||||||||||||||||||||||
Sbjct: 25 gggtaatctgcatcctgaggttta 48
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 gggtaatctgcatcctgaggttta 41
||||||||||||||||||||||||
Sbjct: 17 gggtaatctgcatcctgaggttta 40
>40765_mtr-MIR2111h:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaga 43
|||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaga 42
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaga 43
|||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaga 42
>40647_lja-MIR2111:mirbase
Length = 153
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 ggtaatctgcatcctgaggttta 41
|||||||||||||||||||||||
Sbjct: 40 ggtaatctgcatcctgaggttta 62
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 ggtaatctgcatcctgaggttta 41
|||||||||||||||||||||||
Sbjct: 12 ggtaatctgcatcctgaggttta 34
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 ggtaatctgcatcctgaggttta 41
|||||||||||||||||||||||
Sbjct: 18 ggtaatctgcatcctgaggttta 40
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 aggatagggtaatctgcatcctgaggttta 41
||||| || |||||||||||||||||||||
Sbjct: 12 aggatgggataatctgcatcctgaggttta 41
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 aggatagggtaatctgcatcctgaggttta 41
||||| || |||||||||||||||||||||
Sbjct: 11 aggatgggataatctgcatcctgaggttta 40
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 4 attggttaaggatagggtaatctgcatcctgaggttta 41
||||| ||||||| | |||||||||||||||||||||
Sbjct: 3 attgggtaaggattagataatctgcatcctgaggttta 40
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttag 42
||||||||||||||||||||||
Sbjct: 289 taatctgcatcctgaggtttag 310
