miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40773_mtr-MIR2111p:mirbase
          Length = 107

 Score =  109 bits (55), Expect = 5e-25
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1   gtgttgtatctagtcctcgggatacagattacttttttcttaataccaatgtgaa 55
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  gtgttgtatctagtcctcgggatacagattacttttttcttaataccaatgtgaa 107



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 89  aggatgggataatctgcatcctgaggttta 118
           ||||| || |||||||||||||||||||||
Sbjct: 12  aggatagggtaatctgcatcctgaggttta 41




>40775_mtr-MIR2111r:mirbase
          Length = 134

 Score = 99.6 bits (50), Expect = 5e-22
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 78  tatattgggtgaggatgggataatctgcatcctgaggtttaaaacaatag 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tatattgggtgaggatgggataatctgcatcctgaggtttaaaacaatag 50




>40770_mtr-MIR2111m:mirbase
          Length = 132

 Score = 87.7 bits (44), Expect = 2e-18
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                           
Query: 79  atattgggtgaggatgggataatctgcatcctgaggtttaaaacaata 126
           ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1   atattgggtgaggatgggataatctgcatcctgaggtttaagacaata 48




>40763_mtr-MIR2111f:mirbase
          Length = 134

 Score = 81.8 bits (41), Expect = 1e-16
 Identities = 47/49 (95%)
 Strand = Plus / Plus

                                                            
Query: 79  atattgggtgaggatgggataatctgcatcctgaggtttaaaacaatag 127
           |||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 1   atattgggtggggatgggataatctgcatcctgaggtttagaacaatag 49




>40769_mtr-MIR2111l:mirbase
          Length = 199

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 79  atattgggtgaggatgggataatctgcatcctgaggtttaaaacaata 126
           ||||||||| |||||  ||||||||||||||||||||||||| |||||
Sbjct: 141 atattgggtaaggattagataatctgcatcctgaggtttaaagcaata 188




>40762_mtr-MIR2111e:mirbase
          Length = 102

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 80  tattgggtgaggatgggataatctgcatcctgaggtttaaaacaata 126
           |||||||| |||||  ||||||||||||||||||||||| |||||||
Sbjct: 2   tattgggtaaggattagataatctgcatcctgaggtttataacaata 48




>40760_mtr-MIR2111c:mirbase
          Length = 106

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 91  gatgggataatctgcatcctgaggtttaaaacaa 124
           |||||||||||||||||||||||||||| |||||
Sbjct: 13  gatgggataatctgcatcctgaggtttagaacaa 46




>40647_lja-MIR2111:mirbase
          Length = 153

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 98  taatctgcatcctgaggtttaaaacaatag 127
           ||||||||||||||||||||||||||||||
Sbjct: 42  taatctgcatcctgaggtttaaaacaatag 71




>40776_mtr-MIR2111s:mirbase
          Length = 107

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 98  taatctgcatcctgaggtttaaaacaata 126
           |||||||||||||||||||||||||||||
Sbjct: 21  taatctgcatcctgaggtttaaaacaata 49



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 4   ttgtatctagtcctcgggatacagattacttttttcttaataccaatgt 52
           |||||||||||||||||||| | |||||| |||| ||||  ||||||||
Sbjct: 56  ttgtatctagtcctcgggatgctgattaccttttccttatgaccaatgt 104




>40767_mtr-MIR2111j:mirbase
          Length = 103

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 79  atattgggtgaggatgggataatctgcatcctgaggttta 118
           ||||||||| |||||  |||||||||||||||||||||||
Sbjct: 1   atattgggtaaggattagataatctgcatcctgaggttta 40




>40766_mtr-MIR2111i:mirbase
          Length = 166

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 79  atattgggtgaggatgggataatctgcatcctgaggttta 118
           ||||||||| |||||  |||||||||||||||||||||||
Sbjct: 121 atattgggtaaggattagataatctgcatcctgaggttta 160




>40759_mtr-MIR2111b:mirbase
          Length = 166

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 79  atattgggtgaggatgggataatctgcatcctgaggttta 118
           ||||||||| |||||  |||||||||||||||||||||||
Sbjct: 121 atattgggtaaggattagataatctgcatcctgaggttta 160




>39946_aly-MIR2111a:mirbase
          Length = 141

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 85  ggtgaggatgggataatctgcatcctgaggtttaaa 120
           ||||||||| || |||||||||||||||||||||||
Sbjct: 6   ggtgaggatcgggtaatctgcatcctgaggtttaaa 41




>40771_mtr-MIR2111n:mirbase
          Length = 393

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 80  tattgggtgaggatgggataatctgcatcctgaggttta 118
           |||||||| |||||  |||||||||||||||||||||||
Sbjct: 336 tattgggtaaggattagataatctgcatcctgaggttta 374




>40765_mtr-MIR2111h:mirbase
          Length = 107

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 91  gatgggataatctgcatcctgaggtttaaaacaat 125
           |||| ||||||||||||||||||||||| ||||||
Sbjct: 13  gatgagataatctgcatcctgaggtttagaacaat 47




>40761_mtr-MIR2111d:mirbase
          Length = 152

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                         
Query: 4  ttgtatctagtcctcgggatacagattacttttttcttaataccaat 50
          |||||||||||||| ||||| || ||||| |||| ||||||||||||
Sbjct: 21 ttgtatctagtccttgggattcaaattacattttccttaataccaat 67



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 77  atatattgggtgaggatgggataatctgcatcctgaggttta 118
           |||||||| ||  |||| ||||||||||||||||||||||||
Sbjct: 92  atatattgagtttggataggataatctgcatcctgaggttta 133




>40768_mtr-MIR2111k:mirbase
          Length = 106

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 95  ggataatctgcatcctgaggtttaaaacaa 124
           |||||||||||||||||||||||| |||||
Sbjct: 17  ggataatctgcatcctgaggtttagaacaa 46




>41698_vvi-MIR2111:mirbase
          Length = 108

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 79  atattgggtgaggatgggataatctgcatcctgaggt 115
           ||||||||| ||||| || ||||||||||||||||||
Sbjct: 4   atattgggtcaggatcgggtaatctgcatcctgaggt 40




>40772_mtr-MIR2111o:mirbase
          Length = 106

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 90  ggatgggataatctgcatcctgaggttta 118
           |||| ||||||||||||||||||||||||
Sbjct: 12  ggataggataatctgcatcctgaggttta 40




>40215_ath-MIR2111b:mirbase
          Length = 167

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 98  taatctgcatcctgaggtttaaaac 122
           |||||||||||||||||||||||||
Sbjct: 45  taatctgcatcctgaggtttaaaac 69




>39947_aly-MIR2111b:mirbase
          Length = 123

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 98  taatctgcatcctgaggtttaaaac 122
           |||||||||||||||||||||||||
Sbjct: 20  taatctgcatcctgaggtttaaaac 44




>40758_mtr-MIR2111a:mirbase
          Length = 310

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 91  gatgggataatctgcatcctgaggttta 118
           |||| |||||||||||||||||||||||
Sbjct: 282 gatgagataatctgcatcctgaggttta 309




>40328_bra-MIR2111b:mirbase
          Length = 113

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 98  taatctgcatcctgaggtttaaaa 121
           ||||||||||||||||||||||||
Sbjct: 14  taatctgcatcctgaggtttaaaa 37




>40327_bra-MIR2111a:mirbase
          Length = 161

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 85  ggtgaggatgggataatctgcatcctgaggtttaaa 120
           ||||||||  || |||||||||||||||||||||||
Sbjct: 16  ggtgaggaccgggtaatctgcatcctgaggtttaaa 51




>40303_bna-MIR2111b:mirbase
          Length = 119

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 98  taatctgcatcctgaggtttaaaa 121
           ||||||||||||||||||||||||
Sbjct: 20  taatctgcatcctgaggtttaaaa 43




>40302_bna-MIR2111a:mirbase
          Length = 151

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 85  ggtgaggatgggataatctgcatcctgaggtttaaa 120
           ||||||||  || |||||||||||||||||||||||
Sbjct: 14  ggtgaggaccgggtaatctgcatcctgaggtttaaa 49




>40214_ath-MIR2111a:mirbase
          Length = 159

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 85  ggtgaggatgggataatctgcatcctgaggtttaaa 120
           ||||||||  || |||||||||||||||||||||||
Sbjct: 15  ggtgaggaccgggtaatctgcatcctgaggtttaaa 50




>41161_tcc-MIR2111:mirbase
          Length = 111

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 98  taatctgcatcctgaggttta 118
           |||||||||||||||||||||
Sbjct: 21  taatctgcatcctgaggttta 41