miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 109 bits (55), Expect = 5e-25
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 1 gtgttgtatctagtcctcgggatacagattacttttttcttaataccaatgtgaa 55
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 gtgttgtatctagtcctcgggatacagattacttttttcttaataccaatgtgaa 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 89 aggatgggataatctgcatcctgaggttta 118
||||| || |||||||||||||||||||||
Sbjct: 12 aggatagggtaatctgcatcctgaggttta 41
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 99.6 bits (50), Expect = 5e-22
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 78 tatattgggtgaggatgggataatctgcatcctgaggtttaaaacaatag 127
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatattgggtgaggatgggataatctgcatcctgaggtttaaaacaatag 50
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 87.7 bits (44), Expect = 2e-18
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 79 atattgggtgaggatgggataatctgcatcctgaggtttaaaacaata 126
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 atattgggtgaggatgggataatctgcatcctgaggtttaagacaata 48
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 81.8 bits (41), Expect = 1e-16
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 79 atattgggtgaggatgggataatctgcatcctgaggtttaaaacaatag 127
|||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 atattgggtggggatgggataatctgcatcctgaggtttagaacaatag 49
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 63.9 bits (32), Expect = 3e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 79 atattgggtgaggatgggataatctgcatcctgaggtttaaaacaata 126
||||||||| ||||| ||||||||||||||||||||||||| |||||
Sbjct: 141 atattgggtaaggattagataatctgcatcctgaggtttaaagcaata 188
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 61.9 bits (31), Expect = 1e-10
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 80 tattgggtgaggatgggataatctgcatcctgaggtttaaaacaata 126
|||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 2 tattgggtaaggattagataatctgcatcctgaggtttataacaata 48
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 91 gatgggataatctgcatcctgaggtttaaaacaa 124
|||||||||||||||||||||||||||| |||||
Sbjct: 13 gatgggataatctgcatcctgaggtttagaacaa 46
>40647_lja-MIR2111:mirbase
Length = 153
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 98 taatctgcatcctgaggtttaaaacaatag 127
||||||||||||||||||||||||||||||
Sbjct: 42 taatctgcatcctgaggtttaaaacaatag 71
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 98 taatctgcatcctgaggtttaaaacaata 126
|||||||||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaaaacaata 49
Score = 50.1 bits (25), Expect = 4e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 4 ttgtatctagtcctcgggatacagattacttttttcttaataccaatgt 52
|||||||||||||||||||| | |||||| |||| |||| ||||||||
Sbjct: 56 ttgtatctagtcctcgggatgctgattaccttttccttatgaccaatgt 104
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 79 atattgggtgaggatgggataatctgcatcctgaggttta 118
||||||||| ||||| |||||||||||||||||||||||
Sbjct: 1 atattgggtaaggattagataatctgcatcctgaggttta 40
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 79 atattgggtgaggatgggataatctgcatcctgaggttta 118
||||||||| ||||| |||||||||||||||||||||||
Sbjct: 121 atattgggtaaggattagataatctgcatcctgaggttta 160
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 79 atattgggtgaggatgggataatctgcatcctgaggttta 118
||||||||| ||||| |||||||||||||||||||||||
Sbjct: 121 atattgggtaaggattagataatctgcatcctgaggttta 160
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 85 ggtgaggatgggataatctgcatcctgaggtttaaa 120
||||||||| || |||||||||||||||||||||||
Sbjct: 6 ggtgaggatcgggtaatctgcatcctgaggtttaaa 41
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 80 tattgggtgaggatgggataatctgcatcctgaggttta 118
|||||||| ||||| |||||||||||||||||||||||
Sbjct: 336 tattgggtaaggattagataatctgcatcctgaggttta 374
>40765_mtr-MIR2111h:mirbase
Length = 107
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 91 gatgggataatctgcatcctgaggtttaaaacaat 125
|||| ||||||||||||||||||||||| ||||||
Sbjct: 13 gatgagataatctgcatcctgaggtttagaacaat 47
>40761_mtr-MIR2111d:mirbase
Length = 152
Score = 54.0 bits (27), Expect = 3e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 4 ttgtatctagtcctcgggatacagattacttttttcttaataccaat 50
|||||||||||||| ||||| || ||||| |||| ||||||||||||
Sbjct: 21 ttgtatctagtccttgggattcaaattacattttccttaataccaat 67
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 77 atatattgggtgaggatgggataatctgcatcctgaggttta 118
|||||||| || |||| ||||||||||||||||||||||||
Sbjct: 92 atatattgagtttggataggataatctgcatcctgaggttta 133
>40768_mtr-MIR2111k:mirbase
Length = 106
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 95 ggataatctgcatcctgaggtttaaaacaa 124
|||||||||||||||||||||||| |||||
Sbjct: 17 ggataatctgcatcctgaggtttagaacaa 46
>41698_vvi-MIR2111:mirbase
Length = 108
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 79 atattgggtgaggatgggataatctgcatcctgaggt 115
||||||||| ||||| || ||||||||||||||||||
Sbjct: 4 atattgggtcaggatcgggtaatctgcatcctgaggt 40
>40772_mtr-MIR2111o:mirbase
Length = 106
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 90 ggatgggataatctgcatcctgaggttta 118
|||| ||||||||||||||||||||||||
Sbjct: 12 ggataggataatctgcatcctgaggttta 40
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 98 taatctgcatcctgaggtttaaaac 122
|||||||||||||||||||||||||
Sbjct: 45 taatctgcatcctgaggtttaaaac 69
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 98 taatctgcatcctgaggtttaaaac 122
|||||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaaaac 44
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 91 gatgggataatctgcatcctgaggttta 118
|||| |||||||||||||||||||||||
Sbjct: 282 gatgagataatctgcatcctgaggttta 309
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 taatctgcatcctgaggtttaaaa 121
||||||||||||||||||||||||
Sbjct: 14 taatctgcatcctgaggtttaaaa 37
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 85 ggtgaggatgggataatctgcatcctgaggtttaaa 120
|||||||| || |||||||||||||||||||||||
Sbjct: 16 ggtgaggaccgggtaatctgcatcctgaggtttaaa 51
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 98 taatctgcatcctgaggtttaaaa 121
||||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaaaa 43
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 85 ggtgaggatgggataatctgcatcctgaggtttaaa 120
|||||||| || |||||||||||||||||||||||
Sbjct: 14 ggtgaggaccgggtaatctgcatcctgaggtttaaa 49
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 85 ggtgaggatgggataatctgcatcctgaggtttaaa 120
|||||||| || |||||||||||||||||||||||
Sbjct: 15 ggtgaggaccgggtaatctgcatcctgaggtttaaa 50
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 taatctgcatcctgaggttta 118
|||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggttta 41