miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 99.6 bits (50), Expect = 5e-22
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 1 tatattgggtgaggatgggataatctgcatcctgaggtttaaaacaatag 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tatattgggtgaggatgggataatctgcatcctgaggtttaaaacaatag 127
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 95.6 bits (48), Expect = 8e-21
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 2 atattgggtgaggatgggataatctgcatcctgaggtttaaaacaatagttacgtaatta 61
||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||
Sbjct: 1 atattgggtgaggatgggataatctgcatcctgaggtttaagacaatatttgcgtaattt 60
Query: 62 cccctnnnnnnnttagttacataatcgtttctaagccttggagtgcagattatcttttcc 121
|| | | || | ||||||||||||||||| ||||||| |||||||||||||
Sbjct: 61 ccaaaaaataaataaattgcgtaatcgtttctaagcctcggagtgcggattatcttttcc 120
Query: 122 t 122
|
Sbjct: 121 t 121
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 85.7 bits (43), Expect = 8e-18
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 2 atattgggtgaggatgggataatctgcatcctgaggtttaaaacaatagtt 52
|||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 atattgggtggggatgggataatctgcatcctgaggtttagaacaatagtt 51
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 63.9 bits (32), Expect = 3e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 2 atattgggtgaggatgggataatctgcatcctgaggtttaaaacaata 49
||||||||| ||||| ||||||||||||||||||||||||| |||||
Sbjct: 141 atattgggtaaggattagataatctgcatcctgaggtttaaagcaata 188
Score = 48.1 bits (24), Expect = 2e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 91 tctaagccttggagtgcagattatcttttccttatcacctatgc 134
|||||||||||| ||| |||||||| |||||||||||| ||||
Sbjct: 22 tctaagccttgggatgctgattatctcttccttatcaccaatgc 65
>40764_mtr-MIR2111g:mirbase
Length = 183
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 83 taatcgtttctaagccttggagtgcagattatcttttcct 122
||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 8 taatcgtttctaagcctcggagtgcggattatcttttcct 47
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 91 tctaagccttggagtgcagattatcttttccttatcacctatgc 134
||||||||||||| |||||||||||| |||||||||||| ||||
Sbjct: 63 tctaagccttggaatgcagattatctcttccttatcaccaatgc 106
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 14 gatgggataatctgcatcctgaggtttaaaacaa 47
|||||||||||||||||||||||||||| |||||
Sbjct: 13 gatgggataatctgcatcctgaggtttagaacaa 46
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 91 tctaagccttggagtgcagattatcttttccttatcacctatgc 134
||||||||||||| |||||||||||| |||||||||||| ||||
Sbjct: 6 tctaagccttggaatgcagattatctcttccttatcaccaatgc 49
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 2 atattgggtgaggatgggataatctgcatcctgaggttta 41
||||||||| ||||| |||||||||||||||||||||||
Sbjct: 121 atattgggtaaggattagataatctgcatcctgaggttta 160
>40772_mtr-MIR2111o:mirbase
Length = 106
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 91 tctaagccttggagtgcagattatcttttccttatcacc 129
|||||||||||||||||||||||||| ||||||| ||||
Sbjct: 63 tctaagccttggagtgcagattatctcttccttaacacc 101
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ggatgggataatctgcatcctgaggttta 41
|||| ||||||||||||||||||||||||
Sbjct: 12 ggataggataatctgcatcctgaggttta 40
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 61.9 bits (31), Expect = 1e-10
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 3 tattgggtgaggatgggataatctgcatcctgaggtttaaaacaata 49
|||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 2 tattgggtaaggattagataatctgcatcctgaggtttataacaata 48
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 91 tctaagccttggagtgcagattatcttttcctta 124
|||||||||||||||||||||||||| |||||||
Sbjct: 20 tctaagccttggagtgcagattatctcttcctta 53
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 3 tattgggtgaggatgggataatctgcatcctgaggttta 41
|||||||| ||||| |||||||||||||||||||||||
Sbjct: 336 tattgggtaaggattagataatctgcatcctgaggttta 374
>40647_lja-MIR2111:mirbase
Length = 153
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaaaacaatag 50
||||||||||||||||||||||||||||||
Sbjct: 42 taatctgcatcctgaggtttaaaacaatag 71
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaaaacaata 49
|||||||||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaaaacaata 49
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 2 atattgggtgaggatgggataatctgcatcctgaggttta 41
||||||||| ||||| |||||||||||||||||||||||
Sbjct: 1 atattgggtaaggattagataatctgcatcctgaggttta 40
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 56.0 bits (28), Expect = 7e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 91 tctaagccttggagtgcagattatcttttccttatcacctatgc 134
|||||||||| || |||||||||||| |||||||||||| ||||
Sbjct: 6 tctaagccttagaatgcagattatctcttccttatcaccaatgc 49
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 2 atattgggtgaggatgggataatctgcatcctgaggttta 41
||||||||| ||||| |||||||||||||||||||||||
Sbjct: 121 atattgggtaaggattagataatctgcatcctgaggttta 160
>40765_mtr-MIR2111h:mirbase
Length = 107
Score = 56.0 bits (28), Expect = 7e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 91 tctaagccttggagtgcagattatcttttccttatcacctatgc 134
|||||||||| || |||||||||||| |||||||||||| ||||
Sbjct: 63 tctaagccttagaatgcagattatctcttccttatcaccaatgc 106
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 14 gatgggataatctgcatcctgaggtttaaaacaat 48
|||| ||||||||||||||||||||||| ||||||
Sbjct: 13 gatgagataatctgcatcctgaggtttagaacaat 47
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 8 ggtgaggatgggataatctgcatcctgaggtttaaa 43
||||||||| || |||||||||||||||||||||||
Sbjct: 6 ggtgaggatcgggtaatctgcatcctgaggtttaaa 41
>40768_mtr-MIR2111k:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 18 ggataatctgcatcctgaggtttaaaacaatagttacgtaatt 60
|||||||||||||||||||||||| ||||| || | |||||||
Sbjct: 17 ggataatctgcatcctgaggtttagaacaacagatgcgtaatt 59
Score = 48.1 bits (24), Expect = 2e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 91 tctaagccttggagtgcagattatcttttccttatcacctatgc 134
|||||||||||| ||| |||||||| |||||||||||| ||||
Sbjct: 63 tctaagccttgggatgctgattatctcttccttatcaccaatgc 106
>41698_vvi-MIR2111:mirbase
Length = 108
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 2 atattgggtgaggatgggataatctgcatcctgaggt 38
||||||||| ||||| || ||||||||||||||||||
Sbjct: 4 atattgggtcaggatcgggtaatctgcatcctgaggt 40
>40761_mtr-MIR2111d:mirbase
Length = 152
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 ggatgggataatctgcatcctgaggttta 41
|||| ||||||||||||||||||||||||
Sbjct: 105 ggataggataatctgcatcctgaggttta 133
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaaaac 45
|||||||||||||||||||||||||
Sbjct: 45 taatctgcatcctgaggtttaaaac 69
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaaaac 45
|||||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaaaac 44
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 gatgggataatctgcatcctgaggttta 41
|||| |||||||||||||||||||||||
Sbjct: 282 gatgagataatctgcatcctgaggttta 309
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaaaa 44
||||||||||||||||||||||||
Sbjct: 14 taatctgcatcctgaggtttaaaa 37
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 8 ggtgaggatgggataatctgcatcctgaggtttaaa 43
|||||||| || |||||||||||||||||||||||
Sbjct: 16 ggtgaggaccgggtaatctgcatcctgaggtttaaa 51
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaaaa 44
||||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaaaa 43
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 8 ggtgaggatgggataatctgcatcctgaggtttaaa 43
|||||||| || |||||||||||||||||||||||
Sbjct: 14 ggtgaggaccgggtaatctgcatcctgaggtttaaa 49
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 8 ggtgaggatgggataatctgcatcctgaggtttaaa 43
|||||||| || |||||||||||||||||||||||
Sbjct: 15 ggtgaggaccgggtaatctgcatcctgaggtttaaa 50
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 aggatgggataatctgcatcctgaggttta 41
||||| || |||||||||||||||||||||
Sbjct: 12 aggatagggtaatctgcatcctgaggttta 41
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggttta 41
|||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggttta 41
