miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40647_lja-MIR2111:mirbase
Length = 153
Score = 97.6 bits (49), Expect = 2e-21
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 1 agtattggttaaggatccggtaatctgcatcctgaggtttaaaacaataaatttattgta 60
||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 22 agtataggtttaggatcaggtaatctgcatcctgaggtttaaaacaataggtttattgtg 81
Query: 61 tctagtcctcgggatgctgattacc 85
||||||||| |||||| |||||||
Sbjct: 82 tctagtccttaggatgcagattacc 106
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 81.8 bits (41), Expect = 9e-17
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 4 attggttaaggatccggtaatctgcatcctgaggtttaaaacaataaatttattgtatct 63
||||||||||||| ||||||||||||||||||||||| | ||| | | | ||||||||
Sbjct: 4 attggttaaggatagggtaatctgcatcctgaggtttagagcaacatttgtgttgtatct 63
Query: 64 agtcctcgggatgctgattaccttttccttatgaccaatgt 104
|||||||||||| | |||||| |||| |||| ||||||||
Sbjct: 64 agtcctcgggatacagattacttttttcttaataccaatgt 104
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaaaacaata 49
|||||||||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaaaacaata 49
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaaaacaata 49
|||||||||||||||||||||||||||||
Sbjct: 98 taatctgcatcctgaggtttaaaacaata 126
Score = 50.1 bits (25), Expect = 3e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 56 ttgtatctagtcctcgggatgctgattaccttttccttatgaccaatgt 104
|||||||||||||||||||| | |||||| |||| |||| ||||||||
Sbjct: 4 ttgtatctagtcctcgggatacagattacttttttcttaataccaatgt 52
>40768_mtr-MIR2111k:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 5e-09
Identities = 72/86 (83%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaaaacaataaat---ttattgtatctagtcctcgggatgc 77
||||||||||||||||||||| ||||| | || | ||| |||||| ||| |||||||
Sbjct: 20 taatctgcatcctgaggtttagaacaacagatgcgtaattctatctaagccttgggatgc 79
Query: 78 tgattaccttttccttatgaccaatg 103
|||||| || |||||||| |||||||
Sbjct: 80 tgattatctcttccttatcaccaatg 105
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 aggatccggtaatctgcatcctgaggtttaaa 43
|||||| |||||||||||||||||||||||||
Sbjct: 10 aggatcgggtaatctgcatcctgaggtttaaa 41
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 63 tagtcctcgggatgctgattaccttttcctta 94
||||||||||||||| |||||||| |||||||
Sbjct: 100 tagtcctcgggatgcggattacctcttcctta 131
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 3 tattggttaaggatccggtaatctgcatcctgaggtttaaaacaata 49
|||||| ||||||| | ||||||||||||||||||||||| |||||
Sbjct: 142 tattgggtaaggattagataatctgcatcctgaggtttaaagcaata 188
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 71 gggatgctgattaccttttccttatgaccaatg 103
||||||||||||| || |||||||| |||||||
Sbjct: 32 gggatgctgattatctcttccttatcaccaatg 64
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 3 tattggttaaggatccggtaatctgcatcctgaggtttaaaacaata 49
|||||| ||||||| | ||||||||||||||||||||| |||||||
Sbjct: 2 tattgggtaaggattagataatctgcatcctgaggtttataacaata 48
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 ggtaatctgcatcctgaggtttaaaac 45
|||||||||||||||||||||||||||
Sbjct: 43 ggtaatctgcatcctgaggtttaaaac 69
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 ggtaatctgcatcctgaggtttaaaac 45
|||||||||||||||||||||||||||
Sbjct: 18 ggtaatctgcatcctgaggtttaaaac 44
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 ggtaatctgcatcctgaggtttaaaa 44
||||||||||||||||||||||||||
Sbjct: 12 ggtaatctgcatcctgaggtttaaaa 37
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 ggtaatctgcatcctgaggtttaaaa 44
||||||||||||||||||||||||||
Sbjct: 18 ggtaatctgcatcctgaggtttaaaa 43
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaaaacaata 49
|||||||||||||||||||||| ||||||
Sbjct: 20 taatctgcatcctgaggtttaagacaata 48
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaaaacaata 49
||||||||||||||||||||| |||||||
Sbjct: 20 taatctgcatcctgaggtttagaacaata 48
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 ggtaatctgcatcctgaggtttaaa 43
|||||||||||||||||||||||||
Sbjct: 27 ggtaatctgcatcctgaggtttaaa 51
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 63 tagtcctcgggatgctgattaccttttcctta 94
||||||||||||||| |||||||| |||||||
Sbjct: 109 tagtcctcgggatgcggattacctcttcctta 140
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 ggtaatctgcatcctgaggtttaaa 43
|||||||||||||||||||||||||
Sbjct: 25 ggtaatctgcatcctgaggtttaaa 49
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 63 tagtcctcgggatgctgattaccttttcctta 94
||||||||||||||| |||||||| |||||||
Sbjct: 107 tagtcctcgggatgcggattacctcttcctta 138
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 ggtaatctgcatcctgaggtttaaa 43
|||||||||||||||||||||||||
Sbjct: 26 ggtaatctgcatcctgaggtttaaa 50
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 63 tagtcctcgggatgctgattacct 86
||||||||||||||| ||||||||
Sbjct: 109 tagtcctcgggatgcggattacct 132
>41698_vvi-MIR2111:mirbase
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 3 tattggttaaggatccggtaatctgcatcctgaggt 38
|||||| | |||||| ||||||||||||||||||||
Sbjct: 5 tattgggtcaggatcgggtaatctgcatcctgaggt 40
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 taaggatccggtaatctgcatcctgaggttta 41
|||||| | |||||||||||||||||||||||
Sbjct: 10 taaggaccgggtaatctgcatcctgaggttta 41
>40765_mtr-MIR2111h:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaaaacaat 48
||||||||||||||||||||| ||||||
Sbjct: 20 taatctgcatcctgaggtttagaacaat 47
>40760_mtr-MIR2111c:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggtttaaaacaataaat 52
||||||||||||||||||||| ||||| ||||
Sbjct: 20 taatctgcatcctgaggtttagaacaacaaat 51
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 3 tattggttaaggatccggtaatctgcatcctgaggttta 41
|||||| ||||||| | |||||||||||||||||||||
Sbjct: 336 tattgggtaaggattagataatctgcatcctgaggttta 374
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 3 tattggttaaggatccggtaatctgcatcctgaggttta 41
|||||| ||||||| | |||||||||||||||||||||
Sbjct: 2 tattgggtaaggattagataatctgcatcctgaggttta 40
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 3 tattggttaaggatccggtaatctgcatcctgaggttta 41
|||||| ||||||| | |||||||||||||||||||||
Sbjct: 122 tattgggtaaggattagataatctgcatcctgaggttta 160
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 3 tattggttaaggatccggtaatctgcatcctgaggttta 41
|||||| ||||||| | |||||||||||||||||||||
Sbjct: 122 tattgggtaaggattagataatctgcatcctgaggttta 160
>40772_mtr-MIR2111o:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggttta 41
|||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggttta 40
>40761_mtr-MIR2111d:mirbase
Length = 152
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggttta 41
|||||||||||||||||||||
Sbjct: 113 taatctgcatcctgaggttta 133
Score = 40.1 bits (20), Expect = 3e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 55 attgtatctagtcctcgggatgctgattaccttttcctta 94
||||||||||||||| ||||| | ||||| |||||||||
Sbjct: 20 attgtatctagtccttgggattcaaattacattttcctta 59
>40758_mtr-MIR2111a:mirbase
Length = 310
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 taatctgcatcctgaggttta 41
|||||||||||||||||||||
Sbjct: 289 taatctgcatcctgaggttta 309
