miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40926_mtr-MIR2646b:mirbase
Length = 255
Score = 228 bits (115), Expect = 2e-60
Identities = 211/254 (83%), Gaps = 1/254 (0%)
Strand = Plus / Plus
Query: 19 cccatgacatttagtgatgatgtgtctgnnnnnnnatcaattaatgtgtgccacatgtgt 78
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 3 cccatgacatttagtgatgatgtgtctgtttttttatcaattaatgtgtgccacgtgtgt 62
Query: 79 aattccattttttnnnnnnnnnnnnnnntggtatttttcagatttccagcactaaattct 138
||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 63 aattccattttttaaaaaataaaaaaa-tggtatttttcagattttcagcactaaattct 121
Query: 139 attgttggtcacgtgcctccttctctcaaaatctgaaaaataccannnnnnnnnnnnnnn 198
||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 122 attgttggtcacgtgcctccttctctcaaaatctgaaaaatacaatttttttatttttaa 181
Query: 199 naaaaataaaattacacacgtggcacacattaattgataaaaaacagacacatcagcatt 258
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aaaaaataaaattacacatgtggcacacattaattgataaaaaacagacacatcagcatt 241
Query: 259 aaatgtcacgggga 272
|||||||| |||||
Sbjct: 242 aaatgtcatgggga 255
Score = 87.7 bits (44), Expect = 4e-18
Identities = 57/60 (95%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 208 aattacacacgtggcacacattaattgataa-aaaacagacacatcagcattaaatgtca 266
||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct: 66 aattacacacgtggcacacattaattgataaaaaaacagacacatcatcactaaatgtca 7
Score = 65.9 bits (33), Expect = 2e-11
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 17 tccccatgacatttagtgatgatgtgtctgnnnnnnnatcaattaatgtgtgccacatgt 76
||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct: 255 tccccatgacatttaatgctgatgtgtctgtttttt-atcaattaatgtgtgccacatgt 197
Query: 77 gtaattccatttttt 91
|||||| |||||||
Sbjct: 196 gtaattttatttttt 182
