miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40925_mtr-MIR2646a:mirbase
Length = 289
Score = 198 bits (100), Expect = 1e-51
Identities = 206/254 (81%), Gaps = 1/254 (0%)
Strand = Plus / Plus
Query: 3 cccatgacatttagtgatgatgtgtctgnnnnnnnatcaattaatgtgtgccacgtgtgt 62
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 19 cccatgacatttagtgatgatgtgtctgtttttttatcaattaatgtgtgccacatgtgt 78
Query: 63 aattccattttttnnnnnnnnnnnnnn-tggtatttttcagattttcagcactaaattct 121
||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 79 aattccattttttaaaaaataaaaaaaatggtatttttcagatttccagcactaaattct 138
Query: 122 attgttggtcacgtgcctccttctctcaaaatctgaaaaatacaannnnnnnnnnnnnnn 181
||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 139 attgttggtcacgtgcctccttctctcaaaatctgaaaaataccatttttttattttttt 198
Query: 182 nnnnnntaaaattacacatgtggcacacattaattgataaaaaacagacacatcagcatt 241
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 taaaaataaaattacacacgtggcacacattaattgataaaaaacagacacatcagcatt 258
Query: 242 aaatgtcatgggga 255
|||||||| |||||
Sbjct: 259 aaatgtcacgggga 272
Score = 99.6 bits (50), Expect = 1e-21
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 191 aattacacatgtggcacacattaattgataa-aaaacagacacatcagcattaaatgtca 249
||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct: 82 aattacacatgtggcacacattaattgataaaaaaacagacacatcatcactaaatgtca 23
Query: 250 tgggga 255
||||||
Sbjct: 22 tgggga 17
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 38 atcaattaatgtgtgccacgtgtgtaatt 66
|||||||||||||||||||||||||||||
Sbjct: 236 atcaattaatgtgtgccacgtgtgtaatt 208
