miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40938_mtr-MIR2652e:mirbase
Length = 247
Score = 381 bits (192), Expect = e-106
Identities = 231/244 (94%)
Strand = Plus / Plus
Query: 1 gcgattatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttttgg 60
||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct: 1 gcgattatggtgcataaggaaatccttatgcaccctgcataaatccagaaatgattttgg 60
Query: 61 agtacaactaacaaaaaccatttccacagcaaaatggttttgacataattttatgcaggg 120
||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtacaactcacataaatcatttccacagcaaaatggttttgacataattttatgcaggg 120
Query: 121 tgctggaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttggagt 180
||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||
Sbjct: 121 tgctggaaatccttatgcatggtgctgaaaaccatgaagtacatctaatggttttgaagt 180
Query: 181 acaactcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcacc 240
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 181 acaactcacagaaaccatttctagatttatgcagggtgcataaggattttcttatgcacc 240
Query: 241 ataa 244
||||
Sbjct: 241 ataa 244
Score = 103 bits (52), Expect = 6e-23
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 196 catttctggatttatgcagggtgcataaggatttccttatgcaccataatcg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 catttctggatttatgcagggtgcataaggatttccttatgcaccataatcg 2
Score = 65.9 bits (33), Expect = 1e-11
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatc 45
|||||||||||||| |||| |||||||||||||||||||||
Sbjct: 244 ttatggtgcataagaaaatccttatgcaccctgcataaatc 204
>40941_mtr-MIR2652h:mirbase
Length = 248
Score = 317 bits (160), Expect = 2e-87
Identities = 221/240 (92%), Gaps = 1/240 (0%)
Strand = Plus / Plus
Query: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttttggagta 64
|||||||| |||||||||| ||||||||||||||||||| || |||| ||||||||||
Sbjct: 6 ttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattttggagta 65
Query: 65 caactaacaaaaaccatttccacagcaaaatggttttgacataattttatgcagggtgct 124
|||| ||| |||||||||||| |||||||| |||||| |||||||||||| | ||||||
Sbjct: 66 caacacacagaaaccatttccatagcaaaatagttttggcataattttatgtaaggtgct 125
Query: 125 ggaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttggagtacaa 184
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 126 gaaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttgaagtacaa 185
Query: 185 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 186 ctcacagaaaccatttccggatttatgcagggtgcataagga-ttccttatgcaccataa 244
Score = 73.8 bits (37), Expect = 6e-14
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 196 catttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
|||||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 54 catttctgaatttatgcagggtgcataaagatttccttatacaccataa 6
Score = 60.0 bits (30), Expect = 8e-10
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatcc 46
||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 244 ttatggtgcataaggaa-tccttatgcaccctgcataaatcc 204
>40942_mtr-MIR2652i:mirbase
Length = 235
Score = 256 bits (129), Expect = 7e-69
Identities = 213/240 (88%), Gaps = 12/240 (5%)
Strand = Plus / Plus
Query: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttttggagta 64
|||||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct: 5 ttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttggagta 64
Query: 65 caactaacaaaaaccatttccacagcaaaatggttttgacataattttatgcagggtgct 124
||||| ||| ||||||||||||||| |||||||||||| ||||||| |||| |
Sbjct: 65 caactcacagaaaccatttccacagtaaaatggttttggcataatt-------gggt--t 115
Query: 125 ggaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttggagtacaa 184
|| | | |||||| ||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 116 gggatt---tatgcaaggtgctggaaatcattaagtacatctaatggttttgaagtacaa 172
Query: 185 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ctcacaaaaaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataa 232
Score = 97.6 bits (49), Expect = 4e-21
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 192 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 57 aaaccatttctggatttatgcagggtgcataaggattttcttatgcaccataa 5
Score = 75.8 bits (38), Expect = 1e-14
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagtttt 58
||||||||||||||||||| |||||||||||||||||||| || |||| |||||
Sbjct: 232 ttatggtgcataaggaaatccttatgcaccctgcataaattcagaaatggtttt 179
>40935_mtr-MIR2652b:mirbase
Length = 235
Score = 234 bits (118), Expect = 3e-62
Identities = 209/240 (87%), Gaps = 12/240 (5%)
Strand = Plus / Plus
Query: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttttggagta 64
||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||
Sbjct: 5 ttatggtgcataaggaaatctttatgcaccctgcataaatccagaaatggttttggagta 64
Query: 65 caactaacaaaaaccatttccacagcaaaatggttttgacataattttatgcagggtgct 124
||||| ||| |||||||||||||| ||||||| ||||| ||||||| | |||
Sbjct: 65 caactcacagaaaccatttccacatcaaaatgattttggcataatt---------gggct 115
Query: 125 ggaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttggagtacaa 184
|| | | ||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 116 gggatt---tatgcagagtgctggaaaccattaagtacatctaatgattttgtagtacga 172
Query: 185 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
|||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ctcacaaaaaccatttttgaatttatgcagggtgcataaggatttccttatgcaccataa 232
Score = 97.6 bits (49), Expect = 4e-21
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 192 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 57 aaaccatttctggatttatgcagggtgcataaagatttccttatgcaccataa 5
Score = 75.8 bits (38), Expect = 1e-14
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagtttt 58
||||||||||||||||||| |||||||||||||||||||| || |||| |||||
Sbjct: 232 ttatggtgcataaggaaatccttatgcaccctgcataaattcaaaaatggtttt 179
>40940_mtr-MIR2652g:mirbase
Length = 234
Score = 226 bits (114), Expect = 6e-60
Identities = 205/236 (86%), Gaps = 12/236 (5%)
Strand = Plus / Minus
Query: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttttggagta 64
|||||||||||||| |||| |||||||||||||||||||| | |||| |||||||||||
Sbjct: 231 ttatggtgcataagaaaatccttatgcaccctgcataaatttagaaatggttttggagta 172
Query: 65 caactaacaaaaaccatttccacagcaaaatggttttgacataattttatgcagggtgct 124
|||| ||| |||||||||||| |||||||||||||| ||||||| | |||
Sbjct: 171 taactcacagaaaccatttccatagcaaaatggttttagcataatt---------gggct 121
Query: 125 ggaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttggagtacaa 184
|||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 120 ggaatt---tatgcagagtgctggaaaccattaattacatctaatggttttggagtacag 64
Query: 185 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcacc 240
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 63 ctcacagaaatcatttctggatttatgcagggtgcataagaatttccttatgcacc 8
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 192 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 179 aaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccataa 231
Score = 79.8 bits (40), Expect = 9e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 9 ggtgcataaggaaattcttatgcaccctgcataaatccataaat 52
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8 ggtgcataaggaaattcttatgcaccctgcataaatccagaaat 51
>40945_mtr-MIR2652l:mirbase
Length = 225
Score = 224 bits (113), Expect = 3e-59
Identities = 204/240 (85%), Gaps = 22/240 (9%)
Strand = Plus / Plus
Query: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttttggagta 64
||||| ||||||||||||| |||||||| ||||||||||| | |||| |||||||||||
Sbjct: 5 ttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttttggagta 64
Query: 65 caactaacaaaaaccatttccacagcaaaatggttttgacataattttatgcagggtgct 124
||||| || |||||||||| | ||||||||||||||| ||||||||
Sbjct: 65 caactcacgaaaaccatttttatagcaaaatggttttggcataattt------------- 111
Query: 125 ggaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttggagtacaa 184
|||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 112 ---------tatgcagggtgctggaaaccattaagtatatctaatggttttggagtacaa 162
Query: 185 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 222
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttt 57
||||||||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct: 222 ttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 170
Score = 73.8 bits (37), Expect = 6e-14
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 192 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
||||||||||| ||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 57 aaaccatttctagatttatgcagagtgcataaagatttccttatgcatcataa 5
>40937_mtr-MIR2652d:mirbase
Length = 227
Score = 194 bits (98), Expect = 2e-50
Identities = 197/235 (83%), Gaps = 20/235 (8%)
Strand = Plus / Minus
Query: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttttggagta 64
|||||||| |||| ||||| |||||||||||||||||||| || |||| |||||||||||
Sbjct: 224 ttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttggagta 165
Query: 65 caactaacaaaaaccatttccacagcaaaatggttttgacataattttatgcagggtgct 124
||||| ||||||||||||| | || ||||||||||| |||||||||||||| ||||||
Sbjct: 164 caacttacaaaaaccattttcccaataaaatggtttttgcataattttatgcaaggtgct 105
Query: 125 ggaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttggagtacaa 184
|||||||||||||||| || ||||||| ||||||| |||||
Sbjct: 104 ggaaatccttatgcagagtactggaaagcattaag--------------------tacaa 65
Query: 185 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcac 239
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ctcacataaaccatttctggatttatgcagggtgcataaggatttccttatgcac 10
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 192 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
|||||||||||| |||||||||||||||||||||||||| |||| ||||||||
Sbjct: 172 aaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataa 224
Score = 73.8 bits (37), Expect = 6e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1 gcgattatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttt 57
|||| ||| |||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct: 1 gcgactatagtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 57
>40936_mtr-MIR2652c:mirbase
Length = 227
Score = 194 bits (98), Expect = 2e-50
Identities = 197/235 (83%), Gaps = 20/235 (8%)
Strand = Plus / Plus
Query: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttttggagta 64
|||||||| |||| ||||| |||||||||||||||||||| || |||| |||||||||||
Sbjct: 5 ttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttggagta 64
Query: 65 caactaacaaaaaccatttccacagcaaaatggttttgacataattttatgcagggtgct 124
||||| ||||||||||||| | || ||||||||||| |||||||||||||| ||||||
Sbjct: 65 caacttacaaaaaccattttcccaataaaatggtttttgcataattttatgcaaggtgct 124
Query: 125 ggaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttggagtacaa 184
|||||||||||||||| || ||||||| |||||| ||||||
Sbjct: 125 ggaaatccttatgcagagtactggaaagcattaa--------------------gtacaa 164
Query: 185 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcac 239
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ctcacataaaccatttctggatttatgcagggtgcataaggatttccttatgcac 219
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 192 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
|||||||||||| |||||||||||||||||||||||||| |||| ||||||||
Sbjct: 57 aaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataa 5
Score = 71.9 bits (36), Expect = 2e-13
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 10 gtgcataaggaaattcttatgcaccctgcataaatccataaatagttt 57
|||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct: 219 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 172
>40944_mtr-MIR2652k:mirbase
Length = 232
Score = 165 bits (83), Expect = 2e-41
Identities = 104/111 (93%)
Strand = Plus / Plus
Query: 133 ttatgcagggtgctggaaaccattaagtacatctaatggttttggagtacaactcacaga 192
|||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| |
Sbjct: 118 ttatgcagggtgctggaaaccattaaatacatctaatgattttggagtacaattcactaa 177
Query: 193 aaccatttctggatttatgcagggtgcataaggatttccttatgcaccata 243
|||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 aaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 6 tatggtgcataaggaaattcttatgcaccctgcataaatccataaatagtttt 58
|||||||||||||||||| ||||||||||||||||||||| |||||| |||||
Sbjct: 228 tatggtgcataaggaaatccttatgcaccctgcataaatctataaatggtttt 176
Score = 56.0 bits (28), Expect = 1e-08
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 192 aaaccatttctggatttatgcagggtgcataaggatttccttatgcac 239
||||||||| | |||||||||| | |||||||||||||||||||||||
Sbjct: 54 aaaccatttttagatttatgcaag-tgcataaggatttccttatgcac 8
>40943_mtr-MIR2652j:mirbase
Length = 226
Score = 161 bits (81), Expect = 3e-40
Identities = 181/219 (82%), Gaps = 24/219 (10%)
Strand = Plus / Plus
Query: 20 aaattcttatgcaccctgcataaatccataaatagttttggagtacaactaacaaaaacc 79
|||| ||||||||| ||||||||||||| |||| |||||||||||||| | || |||||
Sbjct: 23 aaatccttatgcactctgcataaatccagaaatggttttggagtacaatt--cagaaacc 80
Query: 80 atttccacagcaaaatggttttgacataattttatgcagggtgctggaaatccttatgca 139
|||||||||||||||||||||||| ||||||| ||||||
Sbjct: 81 atttccacagcaaaatggttttgatataattt----------------------tatgca 118
Query: 140 gggtgctggaaaccattaagtacatctaatggttttggagtacaactcacagaaaccatt 199
|||||||| |||| ||||||||||||||||| ||||| | ||||||||||| ||| ||||
Sbjct: 119 gggtgctgtaaactattaagtacatctaatgattttgaaatacaactcacaaaaatcatt 178
Query: 200 tctggatttatgcagggtgcataaggatttccttatgca 238
|||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tctggatttatgcagggtgcataaggatttccttatgca 217
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 192 aaaccatttctggatttatgcagggtgcataaggattt 229
||||||||||||||||||||||| ||||||||||||||
Sbjct: 60 aaaccatttctggatttatgcagagtgcataaggattt 23
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 11 tgcataaggaaattcttatgcaccctgcataaatccataaat 52
||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 217 tgcataaggaaatccttatgcaccctgcataaatccagaaat 176
>40939_mtr-MIR2652f:mirbase
Length = 186
Score = 97.6 bits (49), Expect = 4e-21
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 149 aaaccattaagtacatctaatggttttggagtacaactcacagaaaccatttc 201
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 32 aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
Score = 69.9 bits (35), Expect = 9e-13
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 55 ttttggagtacaactaacaaaaaccatttccacagcaaaatggtttt 101
||||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct: 55 ttttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 203 ggatttatgcagggtgcataaggatt 228
||||||||||||||||||||||||||
Sbjct: 159 ggatttatgcagggtgcataaggatt 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 25 cttatgcaccctgcataaatcc 46
||||||||||||||||||||||
Sbjct: 180 cttatgcaccctgcataaatcc 159
