miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40937_mtr-MIR2652d:mirbase
Length = 227
Score = 448 bits (226), Expect = e-127
Identities = 226/226 (100%)
Strand = Plus / Minus
Query: 2 cggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttgga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 cggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttgga 168
Query: 62 gtacaacttacaaaaaccattttcccaataaaatggtttttgcataattttatgcaaggt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gtacaacttacaaaaaccattttcccaataaaatggtttttgcataattttatgcaaggt 108
Query: 122 gctggaaatccttatgcagagtactggaaagcattaagtacaactcacataaaccatttc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gctggaaatccttatgcagagtactggaaagcattaagtacaactcacataaaccatttc 48
Query: 182 tggatttatgcagggtgcataaggatttccttatgcactatagtcg 227
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 tggatttatgcagggtgcataaggatttccttatgcactatagtcg 2
Score = 71.9 bits (36), Expect = 2e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 14 ataacgaaatccttatgcaccctgcataaattcagaaatggttt 57
|||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 14 ataaggaaatccttatgcaccctgcataaatccagaaatggttt 57
Score = 71.9 bits (36), Expect = 2e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 172 aaaccatttctggatttatgcagggtgcataaggatttccttat 215
|||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 172 aaaccatttctgaatttatgcagggtgcataaggatttcgttat 215
>40934_mtr-MIR2652a:mirbase
Length = 247
Score = 194 bits (98), Expect = 2e-50
Identities = 197/235 (83%), Gaps = 20/235 (8%)
Strand = Plus / Plus
Query: 5 ttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttggagta 64
|||||||| |||| ||||| |||||||||||||||||||| || |||| |||||||||||
Sbjct: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttttggagta 64
Query: 65 caacttacaaaaaccattttcccaataaaatggtttttgcataattttatgcaaggtgct 124
||||| ||||||||||||| | || ||||||||||| |||||||||||||| ||||||
Sbjct: 65 caactaacaaaaaccatttccacagcaaaatggttttgacataattttatgcagggtgct 124
Query: 125 ggaaatccttatgcagagtactggaaagcatta--------------------agtacaa 164
|||||||||||||||| || ||||||| ||||| |||||||
Sbjct: 125 ggaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttggagtacaa 184
Query: 165 ctcacataaaccatttctggatttatgcagggtgcataaggatttccttatgcac 219
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcac 239
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 5 ttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttt 57
|||||||| |||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 244 ttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 192
Score = 71.9 bits (36), Expect = 2e-13
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 172 aaaccatttctggatttatgcagggtgcataaggatttccttatgcac 219
|||| |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 57 aaactatttatggatttatgcagggtgcataagaatttccttatgcac 10
>40941_mtr-MIR2652h:mirbase
Length = 248
Score = 180 bits (91), Expect = 3e-46
Identities = 145/163 (88%)
Strand = Plus / Plus
Query: 1 gcggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttgg 60
||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 2 gcggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattttgg 61
Query: 61 agtacaacttacaaaaaccattttcccaataaaatggtttttgcataattttatgcaagg 120
|||||||| ||| ||||||||| | | ||||| ||||| ||||||||||||| ||||
Sbjct: 62 agtacaacacacagaaaccatttccatagcaaaatagttttggcataattttatgtaagg 121
Query: 121 tgctggaaatccttatgcagagtactggaaagcattaagtaca 163
||||| |||||||||||||| || ||||||| |||||||||||
Sbjct: 122 tgctgaaaatccttatgcagggtgctggaaaccattaagtaca 164
Score = 65.9 bits (33), Expect = 1e-11
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 1 gcggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttt 57
|||||||||||| |||| ||| |||||||||||||||||||||| | ||||||||||
Sbjct: 248 gcggttatggtgcataaggaa-tccttatgcaccctgcataaatccggaaatggttt 193
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 176 catttctggatttatgcagggtgcataaggatttccttat 215
|||||||| ||||||||||||||||||| |||||||||||
Sbjct: 54 catttctgaatttatgcagggtgcataaagatttccttat 15
>40942_mtr-MIR2652i:mirbase
Length = 235
Score = 170 bits (86), Expect = 3e-43
Identities = 196/232 (84%), Gaps = 18/232 (7%)
Strand = Plus / Plus
Query: 1 gcggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttgg 60
|||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 gcggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttgg 60
Query: 61 agtacaacttacaaaaaccattttcccaataaaatggtttttgcataat----------t 110
||||||||| ||| ||||||||| | || |||||||||||| ||||||| |
Sbjct: 61 agtacaactcacagaaaccatttccacagtaaaatggttttggcataattgggttgggat 120
Query: 111 ttatgcaaggtgctggaaatccttatgcagagtac-tggaaagcatt--aagtacaactc 167
||||||||||||||||||||| ||| ||||| | || | || |||||||||||
Sbjct: 121 ttatgcaaggtgctggaaatcatta-----agtacatctaatggttttgaagtacaactc 175
Query: 168 acataaaccatttctggatttatgcagggtgcataaggatttccttatgcac 219
||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 176 acaaaaaccatttctgaatttatgcagggtgcataaggatttccttatgcac 227
Score = 97.6 bits (49), Expect = 4e-21
Identities = 55/57 (96%)
Strand = Plus / Minus
Query: 2 cggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggtttt 58
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cggttatggtgcataaggaaatccttatgcaccctgcataaattcagaaatggtttt 179
Score = 87.7 bits (44), Expect = 3e-18
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 172 aaaccatttctggatttatgcagggtgcataaggatttccttatgcac 219
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 57 aaaccatttctggatttatgcagggtgcataaggattttcttatgcac 10
>40945_mtr-MIR2652l:mirbase
Length = 225
Score = 163 bits (82), Expect = 7e-41
Identities = 187/220 (85%), Gaps = 4/220 (1%)
Strand = Plus / Plus
Query: 1 gcggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttgg 60
||||||||| || |||| |||||| |||||||| |||||||||| ||||||||||||||
Sbjct: 1 gcggttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttttgg 60
Query: 61 agtacaacttacaaaaaccattttcccaataaaatggtttttgcataattttatgcaagg 120
||||||||| || ||||||||||| | ||||||||||| ||||||||||||||| ||
Sbjct: 61 agtacaactcacgaaaaccatttttatagcaaaatggttttggcataattttatgcaggg 120
Query: 121 tgctggaaatccttatgcaga-gtactggaaagcattaagtacaactcacataaaccatt 179
||||||||| | ||| | | | || ||| | ||||||||||||| ||||||||
Sbjct: 121 tgctggaaaccattaagtatatctaatgg---ttttggagtacaactcacagaaaccatt 177
Query: 180 tctggatttatgcagggtgcataaggatttccttatgcac 219
||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tctggatttatgcagggtgcataaggatttccttatgcac 217
Score = 87.7 bits (44), Expect = 3e-18
Identities = 53/56 (94%)
Strand = Plus / Minus
Query: 2 cggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttt 57
||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 225 cggttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 170
Score = 69.9 bits (35), Expect = 8e-13
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 172 aaaccatttctggatttatgcagggtgcataaggatttccttatgca 218
||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 57 aaaccatttctagatttatgcagagtgcataaagatttccttatgca 11
>40938_mtr-MIR2652e:mirbase
Length = 247
Score = 157 bits (79), Expect = 4e-39
Identities = 121/135 (89%)
Strand = Plus / Plus
Query: 5 ttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttggagta 64
|||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 5 ttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatgattttggagta 64
Query: 65 caacttacaaaaaccattttcccaataaaatggtttttgcataattttatgcaaggtgct 124
||||| ||| ||| ||||| | || ||||||||||| |||||||||||||| ||||||
Sbjct: 65 caactcacataaatcatttccacagcaaaatggttttgacataattttatgcagggtgct 124
Query: 125 ggaaatccttatgca 139
|||||||||||||||
Sbjct: 125 ggaaatccttatgca 139
Score = 101 bits (51), Expect = 2e-22
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 157 aagtacaactcacataaaccatttctggatttatgcagggtgcataaggatttccttatg 216
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 177 aagtacaactcacagaaaccatttctagatttatgcagggtgcataaggattttcttatg 236
Query: 217 cac 219
|||
Sbjct: 237 cac 239
Score = 87.7 bits (44), Expect = 3e-18
Identities = 44/44 (100%)
Strand = Plus / Minus
Query: 176 catttctggatttatgcagggtgcataaggatttccttatgcac 219
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 catttctggatttatgcagggtgcataaggatttccttatgcac 10
Score = 71.9 bits (36), Expect = 2e-13
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 2 cggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttt 57
||||||||||| |||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 247 cggttatggtgcataagaaaatccttatgcaccctgcataaatctagaaatggttt 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 158 agtacaactcacataaaccatttc 181
||||||||||||||||| ||||||
Sbjct: 61 agtacaactcacataaatcatttc 84
>40935_mtr-MIR2652b:mirbase
Length = 235
Score = 123 bits (62), Expect = 6e-29
Identities = 98/110 (89%)
Strand = Plus / Plus
Query: 1 gcggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttgg 60
|||||||||||| |||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 1 gcggttatggtgcataaggaaatctttatgcaccctgcataaatccagaaatggttttgg 60
Query: 61 agtacaacttacaaaaaccattttcccaataaaatggtttttgcataatt 110
||||||||| ||| ||||||||| | || |||||| |||| ||||||||
Sbjct: 61 agtacaactcacagaaaccatttccacatcaaaatgattttggcataatt 110
Score = 91.7 bits (46), Expect = 2e-19
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 158 agtacaactcacataaaccatttctggatttatgcagggtgcataaggatttccttatgc 217
||||| ||||||| ||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 166 agtacgactcacaaaaaccatttttgaatttatgcagggtgcataaggatttccttatgc 225
Query: 218 ac 219
||
Sbjct: 226 ac 227
Score = 89.7 bits (45), Expect = 9e-19
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 2 cggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggtttt 58
||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 235 cggttatggtgcataaggaaatccttatgcaccctgcataaattcaaaaatggtttt 179
Score = 87.7 bits (44), Expect = 3e-18
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 172 aaaccatttctggatttatgcagggtgcataaggatttccttatgcac 219
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 57 aaaccatttctggatttatgcagggtgcataaagatttccttatgcac 10
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 158 agtacaactcacataaaccatttc 181
||||||||||||| ||||||||||
Sbjct: 61 agtacaactcacagaaaccatttc 84
>40943_mtr-MIR2652j:mirbase
Length = 226
Score = 113 bits (57), Expect = 6e-26
Identities = 167/202 (82%), Gaps = 10/202 (4%)
Strand = Plus / Plus
Query: 20 aaatccttatgcaccctgcataaattcagaaatggttttggagtacaacttacaaaaacc 79
|||||||||||||| |||||||||| |||||||||||||||||||||| | || |||||
Sbjct: 23 aaatccttatgcactctgcataaatccagaaatggttttggagtacaatt--cagaaacc 80
Query: 80 attttcccaataaaatggtttttgcataattttatgcaaggtgctggaaatccttatgca 139
|||| | || ||||||||||| ||||||||||||| ||||||| ||| |||
Sbjct: 81 atttccacagcaaaatggttttgatataattttatgcagggtgctgtaaactatta---- 136
Query: 140 gagtactggaaagcatt---aagtacaactcacataaaccatttctggatttatgcaggg 196
||||| || ||| || ||||||||||| ||| |||||||||||||||||||||
Sbjct: 137 -agtacatctaatgattttgaaatacaactcacaaaaatcatttctggatttatgcaggg 195
Query: 197 tgcataaggatttccttatgca 218
||||||||||||||||||||||
Sbjct: 196 tgcataaggatttccttatgca 217
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 172 aaaccatttctggatttatgcagggtgcataaggattt 209
||||||||||||||||||||||| ||||||||||||||
Sbjct: 60 aaaccatttctggatttatgcagagtgcataaggattt 23
Score = 65.9 bits (33), Expect = 1e-11
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 14 ataacgaaatccttatgcaccctgcataaattcagaaatggtttt 58
|||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct: 214 ataaggaaatccttatgcaccctgcataaatccagaaatgatttt 170
>40940_mtr-MIR2652g:mirbase
Length = 234
Score = 113 bits (57), Expect = 6e-26
Identities = 96/109 (88%)
Strand = Plus / Minus
Query: 2 cggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttgga 61
||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 234 cggttatggtgcataagaaaatccttatgcaccctgcataaatttagaaatggttttgga 175
Query: 62 gtacaacttacaaaaaccattttcccaataaaatggtttttgcataatt 110
||| |||| ||| ||||||||| | | ||||||||||| ||||||||
Sbjct: 174 gtataactcacagaaaccatttccatagcaaaatggttttagcataatt 126
Score = 91.7 bits (46), Expect = 2e-19
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 158 agtacaactcacataaaccatttctggatttatgcagggtgcataaggatttccttatgc 217
|||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 70 agtacagctcacagaaatcatttctggatttatgcagggtgcataagaatttccttatgc 11
Query: 218 ac 219
||
Sbjct: 10 ac 9
Score = 71.9 bits (36), Expect = 2e-13
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 172 aaaccatttctggatttatgcagggtgcataaggatttccttatgcac 219
||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 179 aaaccatttctaaatttatgcagggtgcataaggattttcttatgcac 226
Score = 61.9 bits (31), Expect = 2e-10
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 3 ggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatg 53
||||| |||| |||| ||||| |||||||||||||||||||| ||||||||
Sbjct: 2 ggttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatg 52
>40944_mtr-MIR2652k:mirbase
Length = 232
Score = 83.8 bits (42), Expect = 5e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 158 agtacaactcacataaaccatttctggatttatgcagggtgcataaggatttccttatgc 217
||||||| |||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 163 agtacaattcactaaaaccatttatagatttatgcagggtgcataaggatttccttatgc 222
Query: 218 ac 219
||
Sbjct: 223 ac 224
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 6 tatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggtttt 58
||||||| |||| |||||||||||||||||||||||||| | ||||||||||
Sbjct: 228 tatggtgcataaggaaatccttatgcaccctgcataaatctataaatggtttt 176
Score = 58.0 bits (29), Expect = 3e-09
Identities = 81/97 (83%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 14 ataacgaaatccttatgcaccctgcataaattcagaaatggttttggagtacaacttaca 73
|||| ||||||||||||||| ||||||||| | ||||||||||||||| |||| |||
Sbjct: 12 ataaggaaatccttatgcact-tgcataaatctaaaaatggttttggagtgtaactcaca 70
Query: 74 aaaaccattttcccaataaaatggtttttgcataatt 110
| ||||||||| || ||||| ||||| ||||||||
Sbjct: 71 tagaccattttcacatcaaaatagttttggcataatt 107
Score = 56.0 bits (28), Expect = 1e-08
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 172 aaaccatttctggatttatgcagggtgcataaggatttccttatgcac 219
||||||||| | |||||||||| | |||||||||||||||||||||||
Sbjct: 54 aaaccatttttagatttatgcaag-tgcataaggatttccttatgcac 8
>40939_mtr-MIR2652f:mirbase
Length = 186
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 183 ggatttatgcagggtgcataaggatt 208
||||||||||||||||||||||||||
Sbjct: 159 ggatttatgcagggtgcataaggatt 184
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 21 aatccttatgcaccctgcataaat 44
||||||||||||||||||||||||
Sbjct: 184 aatccttatgcaccctgcataaat 161
Score = 44.1 bits (22), Expect = 5e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 50 aatggttttggagtacaacttacaaaaaccattt 83
|||| ||||||||||||||| ||| |||||||||
Sbjct: 50 aatgattttggagtacaactcacagaaaccattt 83
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 158 agtacaactcacataaaccatttc 181
||||||||||||| ||||||||||
Sbjct: 61 agtacaactcacagaaaccatttc 84
