miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40936_mtr-MIR2652c:mirbase
Length = 227
Score = 448 bits (226), Expect = e-127
Identities = 226/226 (100%)
Strand = Plus / Minus
Query: 2 cgactatagtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttatgt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 cgactatagtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttatgt 168
Query: 62 gagttgtacttaatgctttccagtactctgcataaggatttccagcaccttgcataaaat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gagttgtacttaatgctttccagtactctgcataaggatttccagcaccttgcataaaat 108
Query: 122 tatgcaaaaaccattttattgggaaaatggtttttgtaagttgtactccaaaaccatttc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tatgcaaaaaccattttattgggaaaatggtttttgtaagttgtactccaaaaccatttc 48
Query: 182 tgaatttatgcagggtgcataaggatttcgttatacaccataaccg 227
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 tgaatttatgcagggtgcataaggatttcgttatacaccataaccg 2
Score = 71.9 bits (36), Expect = 2e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 14 ataaggaaatccttatgcaccctgcataaatccagaaatggttt 57
|||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 14 ataacgaaatccttatgcaccctgcataaattcagaaatggttt 57
Score = 71.9 bits (36), Expect = 2e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 172 aaaccatttctgaatttatgcagggtgcataaggatttcgttat 215
|||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 172 aaaccatttctggatttatgcagggtgcataaggatttccttat 215
>40934_mtr-MIR2652a:mirbase
Length = 247
Score = 194 bits (98), Expect = 2e-50
Identities = 197/235 (83%), Gaps = 20/235 (8%)
Strand = Plus / Minus
Query: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttatgtgagttgta 69
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 239 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttctgtgagttgta 180
Query: 70 ct--------------------taatgctttccagtactctgcataaggatttccagcac 109
|| ||||| ||||||| || |||||||||||||||||||||
Sbjct: 179 ctccaaaaccattagatgtacttaatggtttccagcaccctgcataaggatttccagcac 120
Query: 110 cttgcataaaattatgcaaaaaccattttattgggaaaatggtttttgtaagttgtactc 169
| |||||||||||||| ||||||||||| || | ||||||||||||| ||||||||||
Sbjct: 119 cctgcataaaattatgtcaaaaccattttgctgtggaaatggtttttgttagttgtactc 60
Query: 170 caaaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataa 224
|||||| |||| || |||||||||||||||||||| ||||| |||| ||||||||
Sbjct: 59 caaaactatttatggatttatgcagggtgcataagaatttccttatgcaccataa 5
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 172 aaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataa 224
|||||||||||| |||||||||||||||||||||||||| |||| ||||||||
Sbjct: 192 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
Score = 73.8 bits (37), Expect = 5e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 1 gcgactatagtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 57
|||| ||| |||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct: 1 gcgattatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttt 57
>40941_mtr-MIR2652h:mirbase
Length = 248
Score = 178 bits (90), Expect = 1e-45
Identities = 144/162 (88%)
Strand = Plus / Minus
Query: 66 tgtacttaatgctttccagtactctgcataaggatttccagcaccttgcataaaattatg 125
||||||||||| ||||||| || |||||||||||||| ||||||||| ||||||||||||
Sbjct: 164 tgtacttaatggtttccagcaccctgcataaggattttcagcaccttacataaaattatg 105
Query: 126 caaaaaccattttattgggaaaatggtttttgtaagttgtactccaaaaccatttctgaa 185
| ||||| ||||| | | ||||||||| ||| |||||||||||||| ||||||||||
Sbjct: 104 ccaaaactattttgctatggaaatggtttctgtgtgttgtactccaaaatcatttctgaa 45
Query: 186 tttatgcagggtgcataaggatttcgttatacaccataaccg 227
|||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 44 tttatgcagggtgcataaagatttccttatacaccataaccg 3
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 14 ataaggaaatccttatgcaccctgcataaatccagaaatg 53
||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 15 ataaggaaatctttatgcaccctgcataaattcagaaatg 54
Score = 63.9 bits (32), Expect = 5e-11
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 172 aaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 227
|||||||||| | |||||||||||||||||||||| ||| |||| |||||||||||
Sbjct: 193 aaaccatttccggatttatgcagggtgcataagga-ttccttatgcaccataaccg 247
>40942_mtr-MIR2652i:mirbase
Length = 235
Score = 168 bits (85), Expect = 1e-42
Identities = 195/231 (84%), Gaps = 18/231 (7%)
Strand = Plus / Minus
Query: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttatgtgagttgta 69
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 227 gtgcataaggaaatccttatgcaccctgcataaattcagaaatggtttttgtgagttgta 168
Query: 70 ctt--aatgctttcca-gtactctgcataaggatttccagcaccttgcataaa------- 119
||| || | || | ||||| ||| ||||||||||||||||||||||
Sbjct: 167 cttcaaaaccattagatgtact-----taatgatttccagcaccttgcataaatcccaac 113
Query: 120 ---attatgcaaaaaccattttattgggaaaatggtttttgtaagttgtactccaaaacc 176
||||||| |||||||||||| || | ||||||||| ||| |||||||||||||||||
Sbjct: 112 ccaattatgccaaaaccattttactgtggaaatggtttctgtgagttgtactccaaaacc 53
Query: 177 atttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 227
||||||| ||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 52 atttctggatttatgcagggtgcataaggattttcttatgcaccataaccg 2
Score = 97.6 bits (49), Expect = 4e-21
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 171 aaaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 227
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 179 aaaaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
Score = 87.7 bits (44), Expect = 3e-18
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 57
||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gtgcataagaaaatccttatgcaccctgcataaatccagaaatggttt 57
>40945_mtr-MIR2652l:mirbase
Length = 225
Score = 161 bits (81), Expect = 3e-40
Identities = 186/219 (84%), Gaps = 4/219 (1%)
Strand = Plus / Minus
Query: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttatgtgagttgta 69
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 217 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttctgtgagttgta 158
Query: 70 cttaatgctttccagtac-tctgcataaggatttccagcaccttgcataaaattatgcaa 128
|| | ||| || | | | ||| | ||||||||||| ||||||||||||||| |
Sbjct: 157 ctccaaaa---ccattagatatacttaatggtttccagcaccctgcataaaattatgcca 101
Query: 129 aaaccattttattgggaaaatggtttttgtaagttgtactccaaaaccatttctgaattt 188
|||||||||| | ||||||||||| || ||||||||||||||||||||||| ||||
Sbjct: 100 aaaccattttgctataaaaatggttttcgtgagttgtactccaaaaccatttctagattt 41
Query: 189 atgcagggtgcataaggatttcgttatacaccataaccg 227
|||||| |||||||| |||||| |||| || ||||||||
Sbjct: 40 atgcagagtgcataaagatttccttatgcatcataaccg 2
Score = 87.7 bits (44), Expect = 3e-18
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 172 aaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 227
|||||||||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 170 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccg 225
Score = 69.9 bits (35), Expect = 8e-13
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 11 tgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 57
|||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 11 tgcataaggaaatctttatgcactctgcataaatctagaaatggttt 57
>40938_mtr-MIR2652e:mirbase
Length = 247
Score = 157 bits (79), Expect = 4e-39
Identities = 121/135 (89%)
Strand = Plus / Minus
Query: 90 tgcataaggatttccagcaccttgcataaaattatgcaaaaaccattttattgggaaaat 149
||||||||||||||||||||| |||||||||||||| ||||||||||| || | ||||
Sbjct: 139 tgcataaggatttccagcaccctgcataaaattatgtcaaaaccattttgctgtggaaat 80
Query: 150 ggtttttgtaagttgtactccaaaaccatttctgaatttatgcagggtgcataaggattt 209
| ||| ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 79 gatttatgtgagttgtactccaaaatcatttctggatttatgcagggtgcataaggattt 20
Query: 210 cgttatacaccataa 224
| |||| ||||||||
Sbjct: 19 ccttatgcaccataa 5
Score = 101 bits (51), Expect = 2e-22
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttatgtgagttgta 69
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 239 gtgcataagaaaatccttatgcaccctgcataaatctagaaatggtttctgtgagttgta 180
Query: 70 ctt 72
|||
Sbjct: 179 ctt 177
Score = 89.7 bits (45), Expect = 9e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 1 gcgactatagtgcataaggaaatccttatgcaccctgcataaatccagaaatg 53
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgattatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 53
Score = 71.9 bits (36), Expect = 2e-13
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 172 aaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 227
||||||||||| ||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 192 aaaccatttctagatttatgcagggtgcataaggattttcttatgcaccataaccg 247
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 48 gaaatggtttatgtgagttgtact 71
|||||| |||||||||||||||||
Sbjct: 84 gaaatgatttatgtgagttgtact 61
>40935_mtr-MIR2652b:mirbase
Length = 235
Score = 121 bits (61), Expect = 2e-28
Identities = 97/109 (88%)
Strand = Plus / Minus
Query: 119 aattatgcaaaaaccattttattgggaaaatggtttttgtaagttgtactccaaaaccat 178
|||||||| |||| |||||| || | ||||||||| ||| |||||||||||||||||||
Sbjct: 110 aattatgccaaaatcattttgatgtggaaatggtttctgtgagttgtactccaaaaccat 51
Query: 179 ttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 227
||||| ||||||||||||||||||| |||||| |||| |||||||||||
Sbjct: 50 ttctggatttatgcagggtgcataaagatttccttatgcaccataaccg 2
Score = 91.7 bits (46), Expect = 2e-19
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttatgtgagttgta 69
||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| |||
Sbjct: 227 gtgcataaggaaatccttatgcaccctgcataaattcaaaaatggtttttgtgagtcgta 168
Query: 70 ct 71
||
Sbjct: 167 ct 166
Score = 89.7 bits (45), Expect = 9e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 171 aaaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 227
|||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 179 aaaaccatttttgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
Score = 87.7 bits (44), Expect = 3e-18
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 57
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 10 gtgcataaggaaatctttatgcaccctgcataaatccagaaatggttt 57
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 48 gaaatggtttatgtgagttgtact 71
|||||||||| |||||||||||||
Sbjct: 84 gaaatggtttctgtgagttgtact 61
>40943_mtr-MIR2652j:mirbase
Length = 226
Score = 113 bits (57), Expect = 6e-26
Identities = 167/202 (82%), Gaps = 10/202 (4%)
Strand = Plus / Minus
Query: 11 tgcataaggaaatccttatgcaccctgcataaatccagaaatggtttatgtgagttgtac 70
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 217 tgcataaggaaatccttatgcaccctgcataaatccagaaatgatttttgtgagttgtat 158
Query: 71 tt---aatgctttccagtactctgcataaggatttccagcaccttgcataaaattatgca 127
|| ||| || ||||| ||| ||| ||||||| |||||||||||||
Sbjct: 157 ttcaaaatcattagatgtact-----taatagtttacagcaccctgcataaaattatatc 103
Query: 128 aaaaccattttattgggaaaatggtttttgtaagttgtactccaaaaccatttctgaatt 187
||||||||||| || | ||||||||| || | |||||||||||||||||||||| |||
Sbjct: 102 aaaaccattttgctgtggaaatggtttctg--aattgtactccaaaaccatttctggatt 45
Query: 188 tatgcagggtgcataaggattt 209
||||||| ||||||||||||||
Sbjct: 44 tatgcagagtgcataaggattt 23
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 20 aaatccttatgcaccctgcataaatccagaaatggttt 57
|||||||||||||| |||||||||||||||||||||||
Sbjct: 23 aaatccttatgcactctgcataaatccagaaatggttt 60
Score = 65.9 bits (33), Expect = 1e-11
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 171 aaaaccatttctgaatttatgcagggtgcataaggatttcgttat 215
|||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 170 aaaatcatttctggatttatgcagggtgcataaggatttccttat 214
>40940_mtr-MIR2652g:mirbase
Length = 234
Score = 113 bits (57), Expect = 6e-26
Identities = 96/109 (88%)
Strand = Plus / Plus
Query: 119 aattatgcaaaaaccattttattgggaaaatggtttttgtaagttgtactccaaaaccat 178
|||||||| ||||||||||| | | ||||||||| ||| |||| ||||||||||||||
Sbjct: 126 aattatgctaaaaccattttgctatggaaatggtttctgtgagttatactccaaaaccat 185
Query: 179 ttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 227
|||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 186 ttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
Score = 91.7 bits (46), Expect = 2e-19
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttatgtgagttgta 69
|||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct: 9 gtgcataaggaaattcttatgcaccctgcataaatccagaaatgatttctgtgagctgta 68
Query: 70 ct 71
||
Sbjct: 69 ct 70
Score = 71.9 bits (36), Expect = 2e-13
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 57
||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 226 gtgcataagaaaatccttatgcaccctgcataaatttagaaatggttt 179
Score = 61.9 bits (31), Expect = 2e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 176 catttctgaatttatgcagggtgcataaggatttcgttatacaccataacc 226
|||||||| |||||||||||||||||||| ||||| |||| |||| |||||
Sbjct: 52 catttctggatttatgcagggtgcataagaatttccttatgcaccgtaacc 2
>40944_mtr-MIR2652k:mirbase
Length = 232
Score = 83.8 bits (42), Expect = 5e-17
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttatgtgagttgta 69
|||||||||||||||||||||||||||||||||||| | ||||||||| |||| |||||
Sbjct: 224 gtgcataaggaaatccttatgcaccctgcataaatctataaatggttttagtgaattgta 165
Query: 70 ct 71
||
Sbjct: 164 ct 163
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 171 aaaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccata 223
|||||||||| | |||||||||||||||||||||||||| |||| |||||||
Sbjct: 176 aaaaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
Score = 58.0 bits (29), Expect = 3e-09
Identities = 81/97 (83%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 119 aattatgcaaaaaccattttattgggaaaatggtttttgtaagttgtactccaaaaccat 178
|||||||| ||||| ||||| || ||||||||| | ||| |||| |||||||||||||
Sbjct: 107 aattatgccaaaactattttgatgtgaaaatggtctatgtgagttacactccaaaaccat 48
Query: 179 ttctgaatttatgcagggtgcataaggatttcgttat 215
|| | ||||||||| ||||||||||||||| ||||
Sbjct: 47 ttttagatttatgca-agtgcataaggatttccttat 12
Score = 56.0 bits (28), Expect = 1e-08
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 57
||||||||||||||||||||||| | |||||||||| | |||||||||
Sbjct: 8 gtgcataaggaaatccttatgca-cttgcataaatctaaaaatggttt 54
>40939_mtr-MIR2652f:mirbase
Length = 186
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 21 aatccttatgcaccctgcataaatcc 46
||||||||||||||||||||||||||
Sbjct: 184 aatccttatgcaccctgcataaatcc 159
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 185 atttatgcagggtgcataaggatt 208
||||||||||||||||||||||||
Sbjct: 161 atttatgcagggtgcataaggatt 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 146 aaatggtttttgtaagttgtactccaaaaccatt 179
||||||||| ||| ||||||||||||||| ||||
Sbjct: 83 aaatggtttctgtgagttgtactccaaaatcatt 50
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 48 gaaatggtttatgtgagttgtact 71
|||||||||| |||||||||||||
Sbjct: 84 gaaatggtttctgtgagttgtact 61
