miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40934_mtr-MIR2652a:mirbase
Length = 247
Score = 97.6 bits (49), Expect = 3e-21
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 32 aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 149 aaaccattaagtacatctaatggttttggagtacaactcacagaaaccatttc 201
Score = 69.9 bits (35), Expect = 6e-13
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 55 ttttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
||||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct: 55 ttttggagtacaactaacaaaaaccatttccacagcaaaatggtttt 101
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 159 ggatttatgcagggtgcataaggatt 184
||||||||||||||||||||||||||
Sbjct: 203 ggatttatgcagggtgcataaggatt 228
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 159 ggatttatgcagggtgcataag 180
||||||||||||||||||||||
Sbjct: 46 ggatttatgcagggtgcataag 25
>40941_mtr-MIR2652h:mirbase
Length = 248
Score = 91.7 bits (46), Expect = 2e-19
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 32 aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttcc 85
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 150 aaaccattaagtacatctaatggttttgaagtacaactcacagaaaccatttcc 203
Score = 71.9 bits (36), Expect = 2e-13
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 50 aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
||||||||||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct: 51 aatgattttggagtacaacacacagaaaccatttccatagcaaaatagtttt 102
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 159 ggatttatgcagggtgcataaggattcc 186
||||||||||||||||||||||||||||
Sbjct: 204 ggatttatgcagggtgcataaggattcc 231
Score = 50.1 bits (25), Expect = 6e-07
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 92 aaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcataa 151
||||| |||| |||| |||| |||| |||| |||| || ||||||||||||||||||||
Sbjct: 50 aaatgattttggagtacaacacacagaaaccatttccatagcaaaatagttttggcataa 109
Query: 152 t 152
|
Sbjct: 110 t 110
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 161 atttatgcagggtgcataaggatt 184
||||||||||||||||||| ||||
Sbjct: 45 atttatgcagggtgcataaagatt 22
>40945_mtr-MIR2652l:mirbase
Length = 225
Score = 89.7 bits (45), Expect = 7e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 32 aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 127 aaaccattaagtatatctaatggttttggagtacaactcacagaaaccatttc 179
Score = 58.0 bits (29), Expect = 2e-09
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 92 aaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcataa 151
|||||||||| |||| |||||||| ||||| ||||| | ||||||| ||||||||||||
Sbjct: 49 aaatggttttggagtacaactcacgaaaaccatttttatagcaaaatggttttggcataa 108
Query: 152 t 152
|
Sbjct: 109 t 109
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 159 ggatttatgcagggtgcataaggatt 184
||||||||||||||||||||||||||
Sbjct: 181 ggatttatgcagggtgcataaggatt 206
Score = 48.1 bits (24), Expect = 2e-06
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 50 aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
|||| |||||||||||||||||| ||||||||| | |||||||||||||
Sbjct: 50 aatggttttggagtacaactcacgaaaaccatttttatagcaaaatggtttt 101
>40938_mtr-MIR2652e:mirbase
Length = 247
Score = 85.7 bits (43), Expect = 1e-17
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 30 gaaaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 147 gaaaaccatgaagtacatctaatggttttgaagtacaactcacagaaaccatttc 201
Score = 79.8 bits (40), Expect = 7e-16
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 50 aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
|||||||||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 50 aatgattttggagtacaactcacataaatcatttccacagcaaaatggtttt 101
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 159 ggatttatgcagggtgcataaggatt 184
||||||||||||||||||||||||||
Sbjct: 46 ggatttatgcagggtgcataaggatt 21
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 160 gatttatgcagggtgcataaggatt 184
|||||||||||||||||||||||||
Sbjct: 204 gatttatgcagggtgcataaggatt 228
>40944_mtr-MIR2652k:mirbase
Length = 232
Score = 83.8 bits (42), Expect = 4e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 91 aaaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcata 150
||||||||||| |||| |||||||| | || |||||||| ||||||||||||||||||
Sbjct: 45 aaaatggttttggagtgtaactcacatagaccattttcacatcaaaatagttttggcata 104
Query: 151 a-tgggctgggatttatgcagggtgc 175
| |||| |||||||||||||||||||
Sbjct: 105 attgggttgggatttatgcagggtgc 130
Score = 71.9 bits (36), Expect = 2e-13
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 32 aaaccattaagtacatctaatgattttggagtacaactcacagaaaccattt 83
|||||||||| ||||||||||||||||||||||||| |||| |||||||||
Sbjct: 134 aaaccattaaatacatctaatgattttggagtacaattcactaaaaccattt 185
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 160 gatttatgcagggtgcataaggatt 184
|||||||||||||||||||||||||
Sbjct: 189 gatttatgcagggtgcataaggatt 213
>40942_mtr-MIR2652i:mirbase
Length = 235
Score = 79.8 bits (40), Expect = 7e-16
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 50 aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
|||| ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 50 aatggttttggagtacaactcacagaaaccatttccacagtaaaatggtttt 101
Score = 73.8 bits (37), Expect = 4e-14
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 92 aaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcataa 151
|||||||||| |||| ||||||||| |||| |||| ||| | ||||| ||||||||||||
Sbjct: 49 aaatggttttggagtacaactcacagaaaccatttccacagtaaaatggttttggcataa 108
Query: 152 -tgggctgggatttatgcagggtgc 175
|||| ||||||||||||| |||||
Sbjct: 109 ttgggttgggatttatgcaaggtgc 133
Score = 73.8 bits (37), Expect = 4e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 36 cattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
|||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct: 141 cattaagtacatctaatggttttgaagtacaactcacaaaaaccatttc 189
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 159 ggatttatgcagggtgcataaggatt 184
||||||||||||||||||||||||||
Sbjct: 46 ggatttatgcagggtgcataaggatt 21
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 161 atttatgcagggtgcataaggatt 184
||||||||||||||||||||||||
Sbjct: 193 atttatgcagggtgcataaggatt 216
>40935_mtr-MIR2652b:mirbase
Length = 235
Score = 79.8 bits (40), Expect = 7e-16
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 32 aaaccattaagtacatctaatgattttggagtacaactcacagaaaccattt 83
|||||||||||||||||||||||||||| ||||| ||||||| |||||||||
Sbjct: 137 aaaccattaagtacatctaatgattttgtagtacgactcacaaaaaccattt 188
Score = 73.8 bits (37), Expect = 4e-14
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 92 aaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcataa 151
|||||||||| |||| ||||||||| |||| |||| ||| |||||| |||||||||||
Sbjct: 49 aaatggttttggagtacaactcacagaaaccatttccacatcaaaatgattttggcataa 108
Query: 152 -tgggctgggatttatgcagggtgc 175
||||||||||||||||||| ||||
Sbjct: 109 ttgggctgggatttatgcagagtgc 133
Score = 71.9 bits (36), Expect = 2e-13
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 50 aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
|||| ||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 50 aatggttttggagtacaactcacagaaaccatttccacatcaaaatgatttt 101
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 161 atttatgcagggtgcataaggatt 184
||||||||||||||||||||||||
Sbjct: 193 atttatgcagggtgcataaggatt 216
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 159 ggatttatgcagggtgcataaggatt 184
||||||||||||||||||||| ||||
Sbjct: 46 ggatttatgcagggtgcataaagatt 21
>40940_mtr-MIR2652g:mirbase
Length = 234
Score = 75.8 bits (38), Expect = 1e-14
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 50 aatgattttggagtacaactcacagaaaccatttccactgcaaaatggttttag 103
|||| |||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 186 aatggttttggagtataactcacagaaaccatttccatagcaaaatggttttag 133
Score = 73.8 bits (37), Expect = 4e-14
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 32 aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
|||||||||| ||||||||||| |||||||||||| |||||||||| ||||||
Sbjct: 99 aaaccattaattacatctaatggttttggagtacagctcacagaaatcatttc 47
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 161 atttatgcagggtgcataaggatt 184
||||||||||||||||||||||||
Sbjct: 192 atttatgcagggtgcataaggatt 215
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 159 ggatttatgcagggtgcataag 180
||||||||||||||||||||||
Sbjct: 45 ggatttatgcagggtgcataag 24
>40943_mtr-MIR2652j:mirbase
Length = 226
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 32 aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
|||| ||||||||||||||||||||||| | ||||||||||| ||| ||||||
Sbjct: 128 aaactattaagtacatctaatgattttgaaatacaactcacaaaaatcatttc 180
Score = 58.0 bits (29), Expect = 2e-09
Identities = 47/52 (90%), Gaps = 2/52 (3%)
Strand = Plus / Plus
Query: 50 aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
|||| ||||||||||||| ||| |||||||||||||| |||||||||||||
Sbjct: 53 aatggttttggagtacaattca--gaaaccatttccacagcaaaatggtttt 102
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 159 ggatttatgcagggtgcataaggatt 184
||||||||||||||||||||||||||
Sbjct: 182 ggatttatgcagggtgcataaggatt 207
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 159 ggatttatgcagggtgcataaggatt 184
|||||||||||| |||||||||||||
Sbjct: 49 ggatttatgcagagtgcataaggatt 24
>40937_mtr-MIR2652d:mirbase
Length = 227
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 159 ggatttatgcagggtgcataaggatt 184
||||||||||||||||||||||||||
Sbjct: 46 ggatttatgcagggtgcataaggatt 21
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 161 atttatgcagggtgcataaggatt 184
||||||||||||||||||||||||
Sbjct: 185 atttatgcagggtgcataaggatt 208
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 50 aatgattttggagtacaactcacagaaaccattt 83
|||| ||||||||||||||| ||| |||||||||
Sbjct: 179 aatggttttggagtacaacttacaaaaaccattt 146
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 61 agtacaactcacagaaaccatttc 84
||||||||||||| ||||||||||
Sbjct: 71 agtacaactcacataaaccatttc 48
>40936_mtr-MIR2652c:mirbase
Length = 227
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 159 ggatttatgcagggtgcataaggatt 184
||||||||||||||||||||||||||
Sbjct: 183 ggatttatgcagggtgcataaggatt 208
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 161 atttatgcagggtgcataaggatt 184
||||||||||||||||||||||||
Sbjct: 44 atttatgcagggtgcataaggatt 21
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 50 aatgattttggagtacaactcacagaaaccattt 83
|||| ||||||||||||||| ||| |||||||||
Sbjct: 50 aatggttttggagtacaacttacaaaaaccattt 83
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 agtacaactcacagaaaccatttc 84
||||||||||||| ||||||||||
Sbjct: 158 agtacaactcacataaaccatttc 181