miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40934_mtr-MIR2652a:mirbase
          Length = 247

 Score = 97.6 bits (49), Expect = 3e-21
 Identities = 52/53 (98%)
 Strand = Plus / Plus

                                                                
Query: 32  aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 149 aaaccattaagtacatctaatggttttggagtacaactcacagaaaccatttc 201



 Score = 69.9 bits (35), Expect = 6e-13
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                          
Query: 55  ttttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
           ||||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct: 55  ttttggagtacaactaacaaaaaccatttccacagcaaaatggtttt 101



 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 159 ggatttatgcagggtgcataaggatt 184
           ||||||||||||||||||||||||||
Sbjct: 203 ggatttatgcagggtgcataaggatt 228



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 159 ggatttatgcagggtgcataag 180
           ||||||||||||||||||||||
Sbjct: 46  ggatttatgcagggtgcataag 25




>40941_mtr-MIR2652h:mirbase
          Length = 248

 Score = 91.7 bits (46), Expect = 2e-19
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                 
Query: 32  aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttcc 85
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 150 aaaccattaagtacatctaatggttttgaagtacaactcacagaaaccatttcc 203



 Score = 71.9 bits (36), Expect = 2e-13
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 50  aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
           ||||||||||||||||||| |||||||||||||||||  ||||||| |||||
Sbjct: 51  aatgattttggagtacaacacacagaaaccatttccatagcaaaatagtttt 102



 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 159 ggatttatgcagggtgcataaggattcc 186
           ||||||||||||||||||||||||||||
Sbjct: 204 ggatttatgcagggtgcataaggattcc 231



 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                       
Query: 92  aaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcataa 151
           ||||| |||| |||| |||| |||| |||| |||| ||  ||||||||||||||||||||
Sbjct: 50  aaatgattttggagtacaacacacagaaaccatttccatagcaaaatagttttggcataa 109

            
Query: 152 t 152
           |
Sbjct: 110 t 110



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 161 atttatgcagggtgcataaggatt 184
           ||||||||||||||||||| ||||
Sbjct: 45  atttatgcagggtgcataaagatt 22




>40945_mtr-MIR2652l:mirbase
          Length = 225

 Score = 89.7 bits (45), Expect = 7e-19
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                
Query: 32  aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
           ||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 127 aaaccattaagtatatctaatggttttggagtacaactcacagaaaccatttc 179



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 92  aaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcataa 151
           |||||||||| |||| |||||||| ||||| ||||| |  ||||||| ||||||||||||
Sbjct: 49  aaatggttttggagtacaactcacgaaaaccatttttatagcaaaatggttttggcataa 108

            
Query: 152 t 152
           |
Sbjct: 109 t 109



 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 159 ggatttatgcagggtgcataaggatt 184
           ||||||||||||||||||||||||||
Sbjct: 181 ggatttatgcagggtgcataaggatt 206



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 50  aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
           |||| ||||||||||||||||||  |||||||||  |  |||||||||||||
Sbjct: 50  aatggttttggagtacaactcacgaaaaccatttttatagcaaaatggtttt 101




>40938_mtr-MIR2652e:mirbase
          Length = 247

 Score = 85.7 bits (43), Expect = 1e-17
 Identities = 52/55 (94%)
 Strand = Plus / Plus

                                                                  
Query: 30  gaaaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
           ||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 147 gaaaaccatgaagtacatctaatggttttgaagtacaactcacagaaaccatttc 201



 Score = 79.8 bits (40), Expect = 7e-16
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                               
Query: 50  aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
           |||||||||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 50  aatgattttggagtacaactcacataaatcatttccacagcaaaatggtttt 101



 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 159 ggatttatgcagggtgcataaggatt 184
           ||||||||||||||||||||||||||
Sbjct: 46  ggatttatgcagggtgcataaggatt 21



 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 160 gatttatgcagggtgcataaggatt 184
           |||||||||||||||||||||||||
Sbjct: 204 gatttatgcagggtgcataaggatt 228




>40944_mtr-MIR2652k:mirbase
          Length = 232

 Score = 83.8 bits (42), Expect = 4e-17
 Identities = 76/86 (88%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                       
Query: 91  aaaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcata 150
           ||||||||||| ||||  |||||||| | || ||||||||  ||||||||||||||||||
Sbjct: 45  aaaatggttttggagtgtaactcacatagaccattttcacatcaaaatagttttggcata 104

                                     
Query: 151 a-tgggctgggatttatgcagggtgc 175
           | |||| |||||||||||||||||||
Sbjct: 105 attgggttgggatttatgcagggtgc 130



 Score = 71.9 bits (36), Expect = 2e-13
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 32  aaaccattaagtacatctaatgattttggagtacaactcacagaaaccattt 83
           |||||||||| ||||||||||||||||||||||||| ||||  |||||||||
Sbjct: 134 aaaccattaaatacatctaatgattttggagtacaattcactaaaaccattt 185



 Score = 50.1 bits (25), Expect = 6e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 160 gatttatgcagggtgcataaggatt 184
           |||||||||||||||||||||||||
Sbjct: 189 gatttatgcagggtgcataaggatt 213




>40942_mtr-MIR2652i:mirbase
          Length = 235

 Score = 79.8 bits (40), Expect = 7e-16
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                               
Query: 50  aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
           |||| ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 50  aatggttttggagtacaactcacagaaaccatttccacagtaaaatggtttt 101



 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 74/85 (87%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                       
Query: 92  aaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcataa 151
           |||||||||| |||| ||||||||| |||| |||| ||| | ||||| ||||||||||||
Sbjct: 49  aaatggttttggagtacaactcacagaaaccatttccacagtaaaatggttttggcataa 108

                                    
Query: 152 -tgggctgggatttatgcagggtgc 175
            |||| ||||||||||||| |||||
Sbjct: 109 ttgggttgggatttatgcaaggtgc 133



 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                            
Query: 36  cattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
           |||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct: 141 cattaagtacatctaatggttttgaagtacaactcacaaaaaccatttc 189



 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 159 ggatttatgcagggtgcataaggatt 184
           ||||||||||||||||||||||||||
Sbjct: 46  ggatttatgcagggtgcataaggatt 21



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 161 atttatgcagggtgcataaggatt 184
           ||||||||||||||||||||||||
Sbjct: 193 atttatgcagggtgcataaggatt 216




>40935_mtr-MIR2652b:mirbase
          Length = 235

 Score = 79.8 bits (40), Expect = 7e-16
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                               
Query: 32  aaaccattaagtacatctaatgattttggagtacaactcacagaaaccattt 83
           |||||||||||||||||||||||||||| ||||| ||||||| |||||||||
Sbjct: 137 aaaccattaagtacatctaatgattttgtagtacgactcacaaaaaccattt 188



 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 74/85 (87%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                       
Query: 92  aaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcataa 151
           |||||||||| |||| ||||||||| |||| |||| |||  ||||||  |||||||||||
Sbjct: 49  aaatggttttggagtacaactcacagaaaccatttccacatcaaaatgattttggcataa 108

                                    
Query: 152 -tgggctgggatttatgcagggtgc 175
            ||||||||||||||||||| ||||
Sbjct: 109 ttgggctgggatttatgcagagtgc 133



 Score = 71.9 bits (36), Expect = 2e-13
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 50  aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
           |||| |||||||||||||||||||||||||||||||||  ||||||| ||||
Sbjct: 50  aatggttttggagtacaactcacagaaaccatttccacatcaaaatgatttt 101



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 161 atttatgcagggtgcataaggatt 184
           ||||||||||||||||||||||||
Sbjct: 193 atttatgcagggtgcataaggatt 216



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 159 ggatttatgcagggtgcataaggatt 184
           ||||||||||||||||||||| ||||
Sbjct: 46  ggatttatgcagggtgcataaagatt 21




>40940_mtr-MIR2652g:mirbase
          Length = 234

 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 50  aatgattttggagtacaactcacagaaaccatttccactgcaaaatggttttag 103
           |||| |||||||||| |||||||||||||||||||||  |||||||||||||||
Sbjct: 186 aatggttttggagtataactcacagaaaccatttccatagcaaaatggttttag 133



 Score = 73.8 bits (37), Expect = 4e-14
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                               
Query: 32 aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
          |||||||||| ||||||||||| |||||||||||| |||||||||| ||||||
Sbjct: 99 aaaccattaattacatctaatggttttggagtacagctcacagaaatcatttc 47



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 161 atttatgcagggtgcataaggatt 184
           ||||||||||||||||||||||||
Sbjct: 192 atttatgcagggtgcataaggatt 215



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 159 ggatttatgcagggtgcataag 180
           ||||||||||||||||||||||
Sbjct: 45  ggatttatgcagggtgcataag 24




>40943_mtr-MIR2652j:mirbase
          Length = 226

 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 32  aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
           |||| ||||||||||||||||||||||| | ||||||||||| ||| ||||||
Sbjct: 128 aaactattaagtacatctaatgattttgaaatacaactcacaaaaatcatttc 180



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 47/52 (90%), Gaps = 2/52 (3%)
 Strand = Plus / Plus

                                                               
Query: 50  aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
           |||| ||||||||||||| |||  |||||||||||||| |||||||||||||
Sbjct: 53  aatggttttggagtacaattca--gaaaccatttccacagcaaaatggtttt 102



 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 159 ggatttatgcagggtgcataaggatt 184
           ||||||||||||||||||||||||||
Sbjct: 182 ggatttatgcagggtgcataaggatt 207



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 159 ggatttatgcagggtgcataaggatt 184
           |||||||||||| |||||||||||||
Sbjct: 49  ggatttatgcagagtgcataaggatt 24




>40937_mtr-MIR2652d:mirbase
          Length = 227

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 159 ggatttatgcagggtgcataaggatt 184
           ||||||||||||||||||||||||||
Sbjct: 46  ggatttatgcagggtgcataaggatt 21



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 161 atttatgcagggtgcataaggatt 184
           ||||||||||||||||||||||||
Sbjct: 185 atttatgcagggtgcataaggatt 208



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 50  aatgattttggagtacaactcacagaaaccattt 83
           |||| ||||||||||||||| ||| |||||||||
Sbjct: 179 aatggttttggagtacaacttacaaaaaccattt 146



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 61 agtacaactcacagaaaccatttc 84
          ||||||||||||| ||||||||||
Sbjct: 71 agtacaactcacataaaccatttc 48




>40936_mtr-MIR2652c:mirbase
          Length = 227

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 159 ggatttatgcagggtgcataaggatt 184
           ||||||||||||||||||||||||||
Sbjct: 183 ggatttatgcagggtgcataaggatt 208



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 161 atttatgcagggtgcataaggatt 184
           ||||||||||||||||||||||||
Sbjct: 44  atttatgcagggtgcataaggatt 21



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 50 aatgattttggagtacaactcacagaaaccattt 83
          |||| ||||||||||||||| ||| |||||||||
Sbjct: 50 aatggttttggagtacaacttacaaaaaccattt 83



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 61  agtacaactcacagaaaccatttc 84
           ||||||||||||| ||||||||||
Sbjct: 158 agtacaactcacataaaccatttc 181