miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40942_mtr-MIR2652i:mirbase
Length = 235
Score = 311 bits (157), Expect = 1e-85
Identities = 214/233 (91%)
Strand = Plus / Minus
Query: 2 ggttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatgatttctgtg 61
||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||| ||||
Sbjct: 234 ggttatggtgcataaggaaatccttatgcaccctgcataaattcagaaatggtttttgtg 175
Query: 62 agctgtactccaaaaccattagatgtaattaatggtttccagcactctgcataaattcca 121
|| |||||| ||||||||||||||||| |||||| |||||||||| ||||||||| |||
Sbjct: 174 agttgtacttcaaaaccattagatgtacttaatgatttccagcaccttgcataaatccca 115
Query: 122 gcccaattatgctaaaaccattttgctatggaaatggtttctgtgagttatactccaaaa 181
||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 114 acccaattatgccaaaaccattttactgtggaaatggtttctgtgagttgtactccaaaa 55
Query: 182 ccatttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
|||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 ccatttctggatttatgcagggtgcataaggattttcttatgcaccataaccg 2
Score = 97.6 bits (49), Expect = 4e-21
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 178 aaaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 179 aaaaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
Score = 77.8 bits (39), Expect = 3e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 2 ggttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatg 52
||||| |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 3 ggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatg 53
>40935_mtr-MIR2652b:mirbase
Length = 235
Score = 295 bits (149), Expect = 8e-81
Identities = 212/233 (90%)
Strand = Plus / Minus
Query: 2 ggttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatgatttctgtg 61
||||| ||||||||||||||| |||||||||||||||||||| || ||||| ||| ||||
Sbjct: 234 ggttatggtgcataaggaaatccttatgcaccctgcataaattcaaaaatggtttttgtg 175
Query: 62 agctgtactccaaaaccattagatgtaattaatggtttccagcactctgcataaattcca 121
|| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 174 agtcgtactacaaaatcattagatgtacttaatggtttccagcactctgcataaatccca 115
Query: 122 gcccaattatgctaaaaccattttgctatggaaatggtttctgtgagttatactccaaaa 181
|||||||||||| |||| ||||||| | ||||||||||||||||||||| ||||||||||
Sbjct: 114 gcccaattatgccaaaatcattttgatgtggaaatggtttctgtgagttgtactccaaaa 55
Query: 182 ccatttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
|||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 54 ccatttctggatttatgcagggtgcataaagatttccttatgcaccataaccg 2
Score = 89.7 bits (45), Expect = 9e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 178 aaaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
|||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 179 aaaaccatttttgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
Score = 77.8 bits (39), Expect = 3e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 2 ggttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatg 52
||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3 ggttatggtgcataaggaaatctttatgcaccctgcataaatccagaaatg 53
>40945_mtr-MIR2652l:mirbase
Length = 225
Score = 250 bits (126), Expect = 4e-67
Identities = 205/233 (87%), Gaps = 10/233 (4%)
Strand = Plus / Minus
Query: 2 ggttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatgatttctgtg 61
||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 224 ggttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttctgtg 165
Query: 62 agctgtactccaaaaccattagatgtaattaatggtttccagcactctgcataaattcca 121
|| ||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 164 agttgtactccaaaaccattagatatacttaatggtttccagcaccctgcataa------ 111
Query: 122 gcccaattatgctaaaaccattttgctatggaaatggtttctgtgagttatactccaaaa 181
|||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct: 110 ----aattatgccaaaaccattttgctataaaaatggttttcgtgagttgtactccaaaa 55
Query: 182 ccatttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
||||||||| |||||||||| |||||||| ||||| |||||||| ||||||||
Sbjct: 54 ccatttctagatttatgcagagtgcataaagatttccttatgcatcataaccg 2
Score = 87.7 bits (44), Expect = 4e-18
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 179 aaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 170 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccg 225
Score = 54.0 bits (27), Expect = 5e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 10 tgcataaggaaattcttatgcaccctgcataaatccagaaatg 52
||||||||||||| |||||||| ||||||||||| |||||||
Sbjct: 11 tgcataaggaaatctttatgcactctgcataaatctagaaatg 53
>40934_mtr-MIR2652a:mirbase
Length = 247
Score = 226 bits (114), Expect = 6e-60
Identities = 205/236 (86%), Gaps = 12/236 (5%)
Strand = Plus / Minus
Query: 8 ggtgcataaggaaattcttatgcaccctgcataaatccagaaatgatttctgtgagctgt 67
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 240 ggtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttctgtgagttgt 181
Query: 68 actccaaaaccattagatgtaattaatggtttccagcactctgcata---aattccagcc 124
||||||||||||||||||||| ||||||||||||||||| ||||||| | |||||||
Sbjct: 180 actccaaaaccattagatgtacttaatggtttccagcaccctgcataaggatttccagca 121
Query: 125 c---------aattatgctaaaaccattttgctatggaaatggtttctgtgagttatact 175
| ||||||| |||||||||||||| |||||||||||| ||| |||| ||||
Sbjct: 120 ccctgcataaaattatgtcaaaaccattttgctgtggaaatggtttttgttagttgtact 61
Query: 176 ccaaaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccataa 231
||||||| |||| | |||||||||||||||||||| |||| ||||||||||||||
Sbjct: 60 ccaaaactatttatggatttatgcagggtgcataagaatttccttatgcaccataa 5
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 179 aaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccataa 231
||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 192 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
Score = 79.8 bits (40), Expect = 9e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 8 ggtgcataaggaaattcttatgcaccctgcataaatccagaaat 51
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9 ggtgcataaggaaattcttatgcaccctgcataaatccataaat 52
>40944_mtr-MIR2652k:mirbase
Length = 232
Score = 220 bits (111), Expect = 4e-58
Identities = 193/219 (88%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 8 ggtgcataaggaaattcttatgcaccctgcataaatccagaaatgatttctgtgagctgt 67
||||||||||||||| ||||||||||||||||||||| | ||||| ||| |||| |||
Sbjct: 225 ggtgcataaggaaatccttatgcaccctgcataaatctataaatggttttagtgaattgt 166
Query: 68 actccaaaaccattagatgtaattaatggtttccagcactctgcataaattccagcccaa 127
||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||| |||||
Sbjct: 165 actccaaaatcattagatgtatttaatggtttccagcaccctgcataaatcccaacccaa 106
Query: 128 ttatgctaaaaccattttgctatggaaatggtttctgtgagttatactccaaaaccattt 187
|||||| ||||| |||||| | || ||||||| | ||||||||| |||||||||||||||
Sbjct: 105 ttatgccaaaactattttgatgtgaaaatggtctatgtgagttacactccaaaaccattt 46
Query: 188 ctaaatttatgcagggtgcataaggattttcttatgcac 226
|| ||||||||| |||||||||||||| |||||||||
Sbjct: 45 ttagatttatgca-agtgcataaggatttccttatgcac 8
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 178 aaaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccata 230
|||||||||| || ||||||||||||||||||||||||| |||||||||||||
Sbjct: 176 aaaaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 ggttacggtgcataaggaaattcttatgcac 32
|||||| |||||||||||||| |||||||||
Sbjct: 1 ggttaccgtgcataaggaaatccttatgcac 31
>40941_mtr-MIR2652h:mirbase
Length = 248
Score = 220 bits (111), Expect = 4e-58
Identities = 212/245 (86%), Gaps = 13/245 (5%)
Strand = Plus / Minus
Query: 2 ggttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatgatttctgtg 61
||||| ||||||||||||| | |||||||||||||||||||||| |||||| ||||||||
Sbjct: 246 ggttatggtgcataaggaa-tccttatgcaccctgcataaatccggaaatggtttctgtg 188
Query: 62 agctgtactccaaaaccattagatgtaattaatggtttccagcactctgcata---aatt 118
|| |||||| ||||||||||||||||| ||||||||||||||||| ||||||| | ||
Sbjct: 187 agttgtacttcaaaaccattagatgtacttaatggtttccagcaccctgcataaggattt 128
Query: 119 ccagccc---------aattatgctaaaaccattttgctatggaaatggtttctgtgagt 169
|||| | |||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct: 127 tcagcaccttacataaaattatgccaaaactattttgctatggaaatggtttctgtgtgt 68
Query: 170 tatactccaaaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccat 229
| |||||||||| ||||||| |||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 67 tgtactccaaaatcatttctgaatttatgcagggtgcataaagatttccttatacaccat 8
Query: 230 aaccg 234
|||||
Sbjct: 7 aaccg 3
Score = 69.9 bits (35), Expect = 8e-13
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 2 ggttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatgattt 56
||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 4 ggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattt 58
Score = 63.9 bits (32), Expect = 5e-11
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 179 aaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
|||||||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct: 193 aaaccatttccggatttatgcagggtgcataagga-ttccttatgcaccataaccg 247
>40938_mtr-MIR2652e:mirbase
Length = 247
Score = 198 bits (100), Expect = 1e-51
Identities = 206/242 (85%), Gaps = 12/242 (4%)
Strand = Plus / Minus
Query: 2 ggttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatgatttctgtg 61
||||| |||||||||| |||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct: 246 ggttatggtgcataagaaaatccttatgcaccctgcataaatctagaaatggtttctgtg 187
Query: 62 agctgtactccaaaaccattagatgtaattaatggtttccagcactctgcataaa---tt 118
|| |||||| ||||||||||||||||| || ||||||| |||||| ||||||| ||
Sbjct: 186 agttgtacttcaaaaccattagatgtacttcatggttttcagcaccatgcataaggattt 127
Query: 119 ccagccc---------aattatgctaaaaccattttgctatggaaatggtttctgtgagt 169
||||| | ||||||| |||||||||||||| |||||||| ||| |||||||
Sbjct: 126 ccagcaccctgcataaaattatgtcaaaaccattttgctgtggaaatgatttatgtgagt 67
Query: 170 tatactccaaaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccat 229
| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 66 tgtactccaaaatcatttctggatttatgcagggtgcataaggatttccttatgcaccat 7
Query: 230 aa 231
||
Sbjct: 6 aa 5
Score = 103 bits (52), Expect = 6e-23
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 179 aaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aaaccatttctagatttatgcagggtgcataaggattttcttatgcaccataaccg 247
Score = 89.7 bits (45), Expect = 9e-19
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 8 ggtgcataaggaaattcttatgcaccctgcataaatccagaaatgattt 56
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 9 ggtgcataaggaaatccttatgcaccctgcataaatccagaaatgattt 57
>40943_mtr-MIR2652j:mirbase
Length = 226
Score = 174 bits (88), Expect = 2e-44
Identities = 179/210 (85%), Gaps = 12/210 (5%)
Strand = Plus / Minus
Query: 10 tgcataaggaaattcttatgcaccctgcataaatccagaaatgatttctgtgagctgtac 69
||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 217 tgcataaggaaatccttatgcaccctgcataaatccagaaatgatttttgtgagttgtat 158
Query: 70 tccaaaaccattagatgtaattaatggtttccagcactctgcataaattccagcccaatt 129
| ||||| ||||||||||| ||||| |||| |||||| |||||||| ||||
Sbjct: 157 ttcaaaatcattagatgtacttaatagtttacagcaccctgcataa----------aatt 108
Query: 130 atgctaaaaccattttgctatggaaatggtttctgtgagttatactccaaaaccatttct 189
|| |||||||||||||| ||||||||||||| ||| || ||||||||||||||||||
Sbjct: 107 atatcaaaaccattttgctgtggaaatggtttc--tgaattgtactccaaaaccatttct 50
Query: 190 aaatttatgcagggtgcataaggattttct 219
|||||||||| |||||||||||||||||
Sbjct: 49 ggatttatgcagagtgcataaggattttct 20
Score = 63.9 bits (32), Expect = 5e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 178 aaaaccatttctaaatttatgcagggtgcataaggattttcttatgca 225
|||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 170 aaaatcatttctggatttatgcagggtgcataaggatttccttatgca 217
Score = 52.0 bits (26), Expect = 2e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 aaattcttatgcaccctgcataaatccagaaatg 52
|||| ||||||||| |||||||||||||||||||
Sbjct: 23 aaatccttatgcactctgcataaatccagaaatg 56
>40937_mtr-MIR2652d:mirbase
Length = 227
Score = 113 bits (57), Expect = 6e-26
Identities = 96/109 (88%)
Strand = Plus / Plus
Query: 126 aattatgctaaaaccattttgctatggaaatggtttctgtgagttatactccaaaaccat 185
|||||||| ||||||||||| | | ||||||||| ||| |||| ||||||||||||||
Sbjct: 119 aattatgcaaaaaccattttattgggaaaatggtttttgtaagttgtactccaaaaccat 178
Query: 186 ttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
|||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 179 ttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 227
Score = 91.7 bits (46), Expect = 2e-19
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 9 gtgcataaggaaattcttatgcaccctgcataaatccagaaatgatttctgtgagctgta 68
|||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttatgtgagttgta 69
Query: 69 ct 70
||
Sbjct: 70 ct 71
Score = 71.9 bits (36), Expect = 2e-13
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 179 aaaccatttctaaatttatgcagggtgcataaggattttcttatgcac 226
||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 57 aaaccatttctggatttatgcagggtgcataaggatttccttatgcac 10
Score = 61.9 bits (31), Expect = 2e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 2 ggttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatg 52
||||| |||| |||| ||||| |||||||||||||||||||| ||||||||
Sbjct: 226 ggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatg 176
>40936_mtr-MIR2652c:mirbase
Length = 227
Score = 113 bits (57), Expect = 6e-26
Identities = 96/109 (88%)
Strand = Plus / Minus
Query: 126 aattatgctaaaaccattttgctatggaaatggtttctgtgagttatactccaaaaccat 185
|||||||| ||||||||||| | | ||||||||| ||| |||| ||||||||||||||
Sbjct: 110 aattatgcaaaaaccattttattgggaaaatggtttttgtaagttgtactccaaaaccat 51
Query: 186 ttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
|||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 50 ttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 2
Score = 91.7 bits (46), Expect = 2e-19
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 9 gtgcataaggaaattcttatgcaccctgcataaatccagaaatgatttctgtgagctgta 68
|||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct: 219 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggtttatgtgagttgta 160
Query: 69 ct 70
||
Sbjct: 159 ct 158
Score = 71.9 bits (36), Expect = 2e-13
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 179 aaaccatttctaaatttatgcagggtgcataaggattttcttatgcac 226
||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 172 aaaccatttctggatttatgcagggtgcataaggatttccttatgcac 219
Score = 61.9 bits (31), Expect = 2e-10
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 2 ggttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatg 52
||||| |||| |||| ||||| |||||||||||||||||||| ||||||||
Sbjct: 3 ggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatg 53
>40939_mtr-MIR2652f:mirbase
Length = 186
Score = 75.8 bits (38), Expect = 1e-14
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 133 ctaaaaccattttgctatggaaatggtttctgtgagttatactccaaaaccatt 186
||||||||||||||| ||||||||||||||||||||| |||||||||| ||||
Sbjct: 103 ctaaaaccattttgcagtggaaatggtttctgtgagttgtactccaaaatcatt 50
Score = 73.8 bits (37), Expect = 5e-14
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 47 gaaatgatttctgtgagctgtactccaaaaccattagatgtaattaatggttt 99
|||||| |||||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 84 gaaatggtttctgtgagttgtactccaaaatcattagatgtacttaatggttt 32
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 192 atttatgcagggtgcataaggatt 215
||||||||||||||||||||||||
Sbjct: 161 atttatgcagggtgcataaggatt 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 24 cttatgcaccctgcataaatcc 45
||||||||||||||||||||||
Sbjct: 180 cttatgcaccctgcataaatcc 159
