miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40938_mtr-MIR2652e:mirbase
Length = 247
Score = 323 bits (163), Expect = 4e-89
Identities = 224/243 (92%), Gaps = 1/243 (0%)
Strand = Plus / Plus
Query: 6 ttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattttggagta 65
|||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 ttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatgattttggagta 64
Query: 66 caacacacagaaaccatttccatagcaaaatagttttggcataattttatgtaaggtgct 125
|||| |||| ||| |||||||| |||||||| |||||| |||||||||||| | ||||||
Sbjct: 65 caactcacataaatcatttccacagcaaaatggttttgacataattttatgcagggtgct 124
Query: 126 gaaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttgaagtacaa 185
| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 125 ggaaatccttatgcatggtgctgaaaaccatgaagtacatctaatggttttgaagtacaa 184
Query: 186 ctcacagaaaccatttccggatttatgcagggtgcataagga-ttccttatgcaccataa 244
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct: 185 ctcacagaaaccatttctagatttatgcagggtgcataaggattttcttatgcaccataa 244
Query: 245 ccg 247
|||
Sbjct: 245 ccg 247
Score = 73.8 bits (37), Expect = 6e-14
Identities = 47/49 (95%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 197 catttccggatttatgcagggtgcataagga-ttccttatgcaccataa 244
|||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 53 catttctggatttatgcagggtgcataaggatttccttatgcaccataa 5
Score = 63.9 bits (32), Expect = 5e-11
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 3 cggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatg 54
||||||||||| ||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 247 cggttatggtgcataagaaaatccttatgcaccctgcataaatctagaaatg 196
>40934_mtr-MIR2652a:mirbase
Length = 247
Score = 317 bits (160), Expect = 2e-87
Identities = 221/240 (92%), Gaps = 1/240 (0%)
Strand = Plus / Plus
Query: 6 ttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattttggagta 65
|||||||| |||||||||| ||||||||||||||||||| || |||| ||||||||||
Sbjct: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttttggagta 64
Query: 66 caacacacagaaaccatttccatagcaaaatagttttggcataattttatgtaaggtgct 125
|||| ||| |||||||||||| |||||||| |||||| |||||||||||| | ||||||
Sbjct: 65 caactaacaaaaaccatttccacagcaaaatggttttgacataattttatgcagggtgct 124
Query: 126 gaaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttgaagtacaa 185
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 125 ggaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttggagtacaa 184
Query: 186 ctcacagaaaccatttccggatttatgcagggtgcataagga-ttccttatgcaccataa 244
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 185 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
Score = 73.8 bits (37), Expect = 6e-14
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 6 ttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatg 54
|||||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 244 ttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 196
Score = 60.0 bits (30), Expect = 9e-10
Identities = 40/42 (95%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 204 ggatttatgcagggtgcataagga-ttccttatgcaccataa 244
|||||||||||||||||||||| | |||||||||||||||||
Sbjct: 46 ggatttatgcagggtgcataagaatttccttatgcaccataa 5
>40942_mtr-MIR2652i:mirbase
Length = 235
Score = 232 bits (117), Expect = 1e-61
Identities = 215/247 (87%), Gaps = 13/247 (5%)
Strand = Plus / Plus
Query: 2 gcggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattttgg 61
|||||||||||| ||||| ||||| ||||||||||||||||||| |||||||| ||||||
Sbjct: 1 gcggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttgg 60
Query: 62 agtacaacacacagaaaccatttccatagcaaaatagttttggcataattttatgtaagg 121
|||||||| ||||||||||||||||| || ||||| |||||||||||||| ||
Sbjct: 61 agtacaactcacagaaaccatttccacagtaaaatggttttggcataattg-------gg 113
Query: 122 tgctgaaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttgaagt 181
| || ||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 114 ttgggat-----ttatgcaaggtgctggaaatcattaagtacatctaatggttttgaagt 168
Query: 182 acaactcacagaaaccatttccggatttatgcagggtgcataagga-ttccttatgcacc 240
|||||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct: 169 acaactcacaaaaaccatttctgaatttatgcagggtgcataaggatttccttatgcacc 228
Query: 241 ataaccg 247
|||||||
Sbjct: 229 ataaccg 235
Score = 89.7 bits (45), Expect = 1e-18
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 3 cggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgatttt 59
||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 235 cggttatggtgcataaggaaatccttatgcaccctgcataaattcagaaatggtttt 179
Score = 81.8 bits (41), Expect = 2e-16
Identities = 54/57 (94%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 193 aaaccatttccggatttatgcagggtgcataagga-ttccttatgcaccataaccgc 248
|||||||||| |||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 57 aaaccatttctggatttatgcagggtgcataaggattttcttatgcaccataaccgc 1
>40935_mtr-MIR2652b:mirbase
Length = 235
Score = 224 bits (113), Expect = 3e-59
Identities = 214/247 (86%), Gaps = 13/247 (5%)
Strand = Plus / Plus
Query: 2 gcggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattttgg 61
|||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 1 gcggttatggtgcataaggaaatctttatgcaccctgcataaatccagaaatggttttgg 60
Query: 62 agtacaacacacagaaaccatttccatagcaaaatagttttggcataattttatgtaagg 121
|||||||| ||||||||||||||||| | |||||| ||||||||||||| |
Sbjct: 61 agtacaactcacagaaaccatttccacatcaaaatgattttggcataatt---------g 111
Query: 122 tgctgaaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttgaagt 181
|||| | |||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 112 ggctggga---tttatgcagagtgctggaaaccattaagtacatctaatgattttgtagt 168
Query: 182 acaactcacagaaaccatttccggatttatgcagggtgcataagga-ttccttatgcacc 240
|| ||||||| ||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct: 169 acgactcacaaaaaccatttttgaatttatgcagggtgcataaggatttccttatgcacc 228
Query: 241 ataaccg 247
|||||||
Sbjct: 229 ataaccg 235
Score = 81.8 bits (41), Expect = 2e-16
Identities = 54/57 (94%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 193 aaaccatttccggatttatgcagggtgcataagga-ttccttatgcaccataaccgc 248
|||||||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 57 aaaccatttctggatttatgcagggtgcataaagatttccttatgcaccataaccgc 1
Score = 81.8 bits (41), Expect = 2e-16
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 3 cggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgatttt 59
||||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||
Sbjct: 235 cggttatggtgcataaggaaatccttatgcaccctgcataaattcaaaaatggtttt 179
>40940_mtr-MIR2652g:mirbase
Length = 234
Score = 220 bits (111), Expect = 4e-58
Identities = 212/245 (86%), Gaps = 13/245 (5%)
Strand = Plus / Minus
Query: 3 cggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattttgga 62
||||||||||| ||||| ||||| |||||||||||||||||||| ||||||| |||||||
Sbjct: 234 cggttatggtgcataagaaaatccttatgcaccctgcataaatttagaaatggttttgga 175
Query: 63 gtacaacacacagaaaccatttccatagcaaaatagttttggcataattttatgtaaggt 122
||| ||| |||||||||||||||||||||||||| ||||| |||||||| |
Sbjct: 174 gtataactcacagaaaccatttccatagcaaaatggttttagcataatt---------gg 124
Query: 123 gctgaaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttgaagta 182
|||| || | ||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 123 gctggaatt---tatgcagagtgctggaaaccattaattacatctaatggttttggagta 67
Query: 183 caactcacagaaaccatttccggatttatgcagggtgcataagga-ttccttatgcacca 241
|| |||||||||| |||||| |||||||||||||||||||||| | |||||||||||||
Sbjct: 66 cagctcacagaaatcatttctggatttatgcagggtgcataagaatttccttatgcaccg 7
Query: 242 taacc 246
|||||
Sbjct: 6 taacc 2
Score = 69.9 bits (35), Expect = 9e-13
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 4 ggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattt 58
||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 2 ggttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatgattt 56
Score = 63.9 bits (32), Expect = 5e-11
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 193 aaaccatttccggatttatgcagggtgcataagga-ttccttatgcaccataaccg 247
|||||||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct: 179 aaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
>40945_mtr-MIR2652l:mirbase
Length = 225
Score = 214 bits (108), Expect = 2e-56
Identities = 209/247 (84%), Gaps = 23/247 (9%)
Strand = Plus / Plus
Query: 2 gcggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattttgg 61
||||||||| || |||||||||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 1 gcggttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttttgg 60
Query: 62 agtacaacacacagaaaccatttccatagcaaaatagttttggcataattttatgtaagg 121
|||||||| ||| ||||||||| |||||||||| |||||||||||||||
Sbjct: 61 agtacaactcacgaaaaccatttttatagcaaaatggttttggcataattt--------- 111
Query: 122 tgctgaaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttgaagt 181
|||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 112 -------------tatgcagggtgctggaaaccattaagtatatctaatggttttggagt 158
Query: 182 acaactcacagaaaccatttccggatttatgcagggtgcataagga-ttccttatgcacc 240
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 159 acaactcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcacc 218
Query: 241 ataaccg 247
|||||||
Sbjct: 219 ataaccg 225
Score = 79.8 bits (40), Expect = 9e-16
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 3 cggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatg 54
||||||||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 225 cggttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatg 174
Score = 58.0 bits (29), Expect = 3e-09
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 193 aaaccatttccggatttatgcagggtgcataagga-ttccttatgcaccataaccgc 248
|||||||||| ||||||||||| |||||||| || ||||||||||| |||||||||
Sbjct: 57 aaaccatttctagatttatgcagagtgcataaagatttccttatgcatcataaccgc 1
>40936_mtr-MIR2652c:mirbase
Length = 227
Score = 180 bits (91), Expect = 3e-46
Identities = 145/163 (88%)
Strand = Plus / Plus
Query: 2 gcggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattttgg 61
||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 1 gcggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttgg 60
Query: 62 agtacaacacacagaaaccatttccatagcaaaatagttttggcataattttatgtaagg 121
|||||||| ||| ||||||||| | | ||||| ||||| ||||||||||||| ||||
Sbjct: 61 agtacaacttacaaaaaccattttcccaataaaatggtttttgcataattttatgcaagg 120
Query: 122 tgctgaaaatccttatgcagggtgctggaaaccattaagtaca 164
||||| |||||||||||||| || ||||||| |||||||||||
Sbjct: 121 tgctggaaatccttatgcagagtactggaaagcattaagtaca 163
Score = 65.9 bits (33), Expect = 1e-11
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 193 aaaccatttccggatttatgcagggtgcataagga-ttccttatgcaccataaccgc 248
|||||||||| | |||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct: 57 aaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataaccgc 1
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 15 ataaggaaatctttatgcaccctgcataaattcagaaatg 54
||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 215 ataaggaaatccttatgcaccctgcataaatccagaaatg 176
>40937_mtr-MIR2652d:mirbase
Length = 227
Score = 178 bits (90), Expect = 1e-45
Identities = 144/162 (88%)
Strand = Plus / Minus
Query: 3 cggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattttgga 62
|||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 227 cggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttgga 168
Query: 63 gtacaacacacagaaaccatttccatagcaaaatagttttggcataattttatgtaaggt 122
||||||| ||| ||||||||| | | ||||| ||||| ||||||||||||| |||||
Sbjct: 167 gtacaacttacaaaaaccattttcccaataaaatggtttttgcataattttatgcaaggt 108
Query: 123 gctgaaaatccttatgcagggtgctggaaaccattaagtaca 164
|||| |||||||||||||| || ||||||| |||||||||||
Sbjct: 107 gctggaaatccttatgcagagtactggaaagcattaagtaca 66
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 15 ataaggaaatctttatgcaccctgcataaattcagaaatg 54
||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 14 ataaggaaatccttatgcaccctgcataaatccagaaatg 53
Score = 63.9 bits (32), Expect = 5e-11
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 193 aaaccatttccggatttatgcagggtgcataagga-ttccttatgcaccataaccg 247
|||||||||| | |||||||||||||||||||||| ||| |||| |||||||||||
Sbjct: 172 aaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 227
>40943_mtr-MIR2652j:mirbase
Length = 226
Score = 139 bits (70), Expect = 1e-33
Identities = 98/106 (92%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 134 ttatgcagggtgctggaaaccattaagtacatctaatggttttgaagtacaactcacaga 193
||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||| |
Sbjct: 112 ttatgcagggtgctgtaaactattaagtacatctaatgattttgaaatacaactcacaaa 171
Query: 194 aaccatttccggatttatgcagggtgcataagga-ttccttatgca 238
|| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 172 aatcatttctggatttatgcagggtgcataaggatttccttatgca 217
Score = 93.7 bits (47), Expect = 6e-20
Identities = 92/106 (86%), Gaps = 2/106 (1%)
Strand = Plus / Plus
Query: 21 aaatctttatgcaccctgcataaattcagaaatgattttggagtacaacacacagaaacc 80
||||| |||||||| |||||||||| |||||||| |||||||||||| | ||||||||
Sbjct: 23 aaatccttatgcactctgcataaatccagaaatggttttggagtaca--attcagaaacc 80
Query: 81 atttccatagcaaaatagttttggcataattttatgtaaggtgctg 126
||||||| |||||||| |||||| ||||||||||| | |||||||
Sbjct: 81 atttccacagcaaaatggttttgatataattttatgcagggtgctg 126
Score = 73.8 bits (37), Expect = 6e-14
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 15 ataaggaaatctttatgcaccctgcataaattcagaaatgatttt 59
||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 214 ataaggaaatccttatgcaccctgcataaatccagaaatgatttt 170
Score = 58.0 bits (29), Expect = 3e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 193 aaaccatttccggatttatgcagggtgcataaggatt 229
|||||||||| |||||||||||| |||||||||||||
Sbjct: 60 aaaccatttctggatttatgcagagtgcataaggatt 24
>40944_mtr-MIR2652k:mirbase
Length = 232
Score = 133 bits (67), Expect = 7e-32
Identities = 101/111 (90%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 134 ttatgcagggtgctggaaaccattaagtacatctaatggttttgaagtacaactcacaga 193
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||| |
Sbjct: 118 ttatgcagggtgctggaaaccattaaatacatctaatgattttggagtacaattcactaa 177
Query: 194 aaccatttccggatttatgcagggtgcataagga-ttccttatgcaccata 243
|||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 178 aaccatttatagatttatgcagggtgcataaggatttccttatgcaccata 228
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 7 tatggtgtataaggaaatctttatgcaccctgcataaat 45
||||||| ||||||||||| |||||||||||||||||||
Sbjct: 228 tatggtgcataaggaaatccttatgcaccctgcataaat 190
>40939_mtr-MIR2652f:mirbase
Length = 186
Score = 91.7 bits (46), Expect = 2e-19
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 150 aaaccattaagtacatctaatggttttgaagtacaactcacagaaaccatttcc 203
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 32 aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttcc 85
Score = 71.9 bits (36), Expect = 2e-13
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 51 aatgattttggagtacaacacacagaaaccatttccatagcaaaatagtttt 102
||||||||||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct: 50 aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 204 ggatttatgcagggtgcataaggattcc 231
||||||||||||||||||||||||||||
Sbjct: 159 ggatttatgcagggtgcataaggattcc 186
Score = 50.1 bits (25), Expect = 8e-07
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 50 aaatgattttggagtacaacacacagaaaccatttccatagcaaaatagttttggcataa 109
||||| |||| |||| |||| |||| |||| |||| || ||||||||||||||||||||
Sbjct: 92 aaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcataa 151
Query: 110 t 110
|
Sbjct: 152 t 152
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 22 aatctttatgcaccctgcataaat 45
|||| |||||||||||||||||||
Sbjct: 184 aatccttatgcaccctgcataaat 161
