miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40935_mtr-MIR2652b:mirbase
Length = 235
Score = 363 bits (183), Expect = e-101
Identities = 222/235 (94%)
Strand = Plus / Plus
Query: 1 gcggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttgg 60
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 gcggttatggtgcataaggaaatctttatgcaccctgcataaatccagaaatggttttgg 60
Query: 61 agtacaactcacagaaaccatttccacagtaaaatggttttggcataattgggttgggat 120
|||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct: 61 agtacaactcacagaaaccatttccacatcaaaatgattttggcataattgggctgggat 120
Query: 121 ttatgcaaggtgctggaaatcattaagtacatctaatggttttgaagtacaactcacaaa 180
||||||| |||||||||| |||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 121 ttatgcagagtgctggaaaccattaagtacatctaatgattttgtagtacgactcacaaa 180
Query: 181 aaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaccatttttgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
Score = 97.6 bits (49), Expect = 4e-21
Identities = 55/57 (96%)
Strand = Plus / Minus
Query: 179 aaaaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 58 aaaaccatttctggatttatgcagggtgcataaagatttccttatgcaccataaccg 2
Score = 89.7 bits (45), Expect = 9e-19
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 2 cggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggtttt 58
||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct: 235 cggttatggtgcataaggaaatccttatgcaccctgcataaattcaaaaatggtttt 179
>40940_mtr-MIR2652g:mirbase
Length = 234
Score = 311 bits (157), Expect = 1e-85
Identities = 214/233 (91%)
Strand = Plus / Minus
Query: 2 cggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttgga 61
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 234 cggttatggtgcataagaaaatccttatgcaccctgcataaatttagaaatggttttgga 175
Query: 62 gtacaactcacagaaaccatttccacagtaaaatggttttggcataattgggttgggatt 121
||| ||||||||||||||||||||| || ||||||||||| ||||||||||| ||| |||
Sbjct: 174 gtataactcacagaaaccatttccatagcaaaatggttttagcataattgggctggaatt 115
Query: 122 tatgcaaggtgctggaaatcattaagtacatctaatggttttgaagtacaactcacaaaa 181
|||||| |||||||||| |||||| ||||||||||||||||| |||||| |||||| ||
Sbjct: 114 tatgcagagtgctggaaaccattaattacatctaatggttttggagtacagctcacagaa 55
Query: 182 accatttctgaatttatgcagggtgcataaggatttccttatgcaccataacc 234
| |||||||| |||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 54 atcatttctggatttatgcagggtgcataagaatttccttatgcaccgtaacc 2
Score = 97.6 bits (49), Expect = 4e-21
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 179 aaaaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 178 aaaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
Score = 77.8 bits (39), Expect = 3e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 3 ggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatg 53
||||| |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 2 ggttacggtgcataaggaaattcttatgcaccctgcataaatccagaaatg 52
>40945_mtr-MIR2652l:mirbase
Length = 225
Score = 262 bits (132), Expect = 1e-70
Identities = 208/235 (88%), Gaps = 10/235 (4%)
Strand = Plus / Plus
Query: 1 gcggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttgg 60
||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 1 gcggttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttttgg 60
Query: 61 agtacaactcacagaaaccatttccacagtaaaatggttttggcataattgggttgggat 120
|||||||||||| ||||||||| | || ||||||||||||||||||||
Sbjct: 61 agtacaactcacgaaaaccatttttatagcaaaatggttttggcataatt---------- 110
Query: 121 ttatgcaaggtgctggaaatcattaagtacatctaatggttttgaagtacaactcacaaa 180
||||||| ||||||||||| ||||||||| |||||||||||||| ||||||||||||| |
Sbjct: 111 ttatgcagggtgctggaaaccattaagtatatctaatggttttggagtacaactcacaga 170
Query: 181 aaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 aaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccg 225
Score = 103 bits (52), Expect = 6e-23
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 2 cggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttt 57
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cggttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 170
Score = 73.8 bits (37), Expect = 5e-14
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 179 aaaaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
|||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 58 aaaaccatttctagatttatgcagagtgcataaagatttccttatgcatcataaccg 2
>40934_mtr-MIR2652a:mirbase
Length = 247
Score = 256 bits (129), Expect = 7e-69
Identities = 213/240 (88%), Gaps = 12/240 (5%)
Strand = Plus / Plus
Query: 5 ttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttggagta 64
|||||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttttggagta 64
Query: 65 caactcacagaaaccatttccacagtaaaatggttttggcataatt-------gggt--t 115
||||| ||| ||||||||||||||| |||||||||||| ||||||| |||| |
Sbjct: 65 caactaacaaaaaccatttccacagcaaaatggttttgacataattttatgcagggtgct 124
Query: 116 gggatt---tatgcaaggtgctggaaatcattaagtacatctaatggttttgaagtacaa 172
|| | | |||||| ||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 125 ggaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttggagtacaa 184
Query: 173 ctcacaaaaaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataa 232
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
Score = 97.6 bits (49), Expect = 4e-21
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 5 ttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttt 57
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 192
Score = 75.8 bits (38), Expect = 1e-14
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 179 aaaaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataa 232
||||| |||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 58 aaaactatttatggatttatgcagggtgcataagaatttccttatgcaccataa 5
>40938_mtr-MIR2652e:mirbase
Length = 247
Score = 254 bits (128), Expect = 3e-68
Identities = 215/243 (88%), Gaps = 12/243 (4%)
Strand = Plus / Plus
Query: 5 ttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttggagta 64
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5 ttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatgattttggagta 64
Query: 65 caactcacagaaaccatttccacagtaaaatggttttggcataatt-------gggt--t 115
||||||||| ||| ||||||||||| |||||||||||| ||||||| |||| |
Sbjct: 65 caactcacataaatcatttccacagcaaaatggttttgacataattttatgcagggtgct 124
Query: 116 gggatt---tatgcaaggtgctggaaatcattaagtacatctaatggttttgaagtacaa 172
|| | | |||||| ||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct: 125 ggaaatccttatgcatggtgctgaaaaccatgaagtacatctaatggttttgaagtacaa 184
Query: 173 ctcacaaaaaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataa 232
|||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 185 ctcacagaaaccatttctagatttatgcagggtgcataaggattttcttatgcaccataa 244
Query: 233 ccg 235
|||
Sbjct: 245 ccg 247
Score = 103 bits (52), Expect = 6e-23
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 2 cggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttt 57
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 247 cggttatggtgcataagaaaatccttatgcaccctgcataaatctagaaatggttt 192
Score = 91.7 bits (46), Expect = 2e-19
Identities = 52/54 (96%)
Strand = Plus / Minus
Query: 179 aaaaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataa 232
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 aaaatcatttctggatttatgcagggtgcataaggatttccttatgcaccataa 5
>40944_mtr-MIR2652k:mirbase
Length = 232
Score = 250 bits (126), Expect = 4e-67
Identities = 199/222 (89%), Gaps = 1/222 (0%)
Strand = Plus / Plus
Query: 10 gtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttggagtacaact 69
||||||||| |||||||||||||| |||||||||| | ||||||||||||||| ||||
Sbjct: 8 gtgcataaggaaatccttatgcact-tgcataaatctaaaaatggttttggagtgtaact 66
Query: 70 cacagaaaccatttccacagtaaaatggttttggcataattgggttgggatttatgcaag 129
|||| | ||||||| |||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct: 67 cacatagaccattttcacatcaaaatagttttggcataattgggttgggatttatgcagg 126
Query: 130 gtgctggaaatcattaagtacatctaatggttttgaagtacaactcacaaaaaccatttc 189
|||||||||| |||||| ||||||||||| ||||| ||||||| |||| ||||||||||
Sbjct: 127 gtgctggaaaccattaaatacatctaatgattttggagtacaattcactaaaaccattta 186
Query: 190 tgaatttatgcagggtgcataaggatttccttatgcaccata 231
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tagatttatgcagggtgcataaggatttccttatgcaccata 228
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 6 tatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggtttt 58
||||||||||||| |||||||||||||||||||||||||| | ||||||||||
Sbjct: 228 tatggtgcataaggaaatccttatgcaccctgcataaatctataaatggtttt 176
Score = 50.1 bits (25), Expect = 8e-07
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 179 aaaaccatttctgaatttatgcagggtgcataaggatttccttatgcac 227
|||||||||| | ||||||||| | |||||||||||||||||||||||
Sbjct: 55 aaaaccatttttagatttatgcaag-tgcataaggatttccttatgcac 8
>40941_mtr-MIR2652h:mirbase
Length = 248
Score = 232 bits (117), Expect = 1e-61
Identities = 215/247 (87%), Gaps = 13/247 (5%)
Strand = Plus / Plus
Query: 1 gcggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttgg 60
|||||||||||| ||||| ||||| ||||||||||||||||||| |||||||| ||||||
Sbjct: 2 gcggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattttgg 61
Query: 61 agtacaactcacagaaaccatttccacagtaaaatggttttggcataattg-------gg 113
|||||||| ||||||||||||||||| || ||||| |||||||||||||| ||
Sbjct: 62 agtacaacacacagaaaccatttccatagcaaaatagttttggcataattttatgtaagg 121
Query: 114 ttgggat-----ttatgcaaggtgctggaaatcattaagtacatctaatggttttgaagt 168
| || ||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 122 tgctgaaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttgaagt 181
Query: 169 acaactcacaaaaaccatttctgaatttatgcagggtgcataaggatttccttatgcacc 228
|||||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct: 182 acaactcacagaaaccatttccggatttatgcagggtgcataagga-ttccttatgcacc 240
Query: 229 ataaccg 235
|||||||
Sbjct: 241 ataaccg 247
Score = 89.7 bits (45), Expect = 9e-19
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 179 aaaaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
|||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 59 aaaatcatttctgaatttatgcagggtgcataaagatttccttatacaccataaccg 3
Score = 81.8 bits (41), Expect = 2e-16
Identities = 54/57 (94%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 1 gcggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttt 57
|||||||||||||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct: 248 gcggttatggtgcataaggaa-tccttatgcaccctgcataaatccggaaatggttt 193
>40943_mtr-MIR2652j:mirbase
Length = 226
Score = 222 bits (112), Expect = 9e-59
Identities = 185/210 (88%), Gaps = 12/210 (5%)
Strand = Plus / Plus
Query: 17 agaaaatccttatgcaccctgcataaatccagaaatggttttggagtacaactcacagaa 76
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 20 agaaaatccttatgcactctgcataaatccagaaatggttttggagtacaattca--gaa 77
Query: 77 accatttccacagtaaaatggttttggcataattgggttgggatttatgcaaggtgctgg 136
||||||||||||| |||||||||||| |||||| ||||||| |||||||
Sbjct: 78 accatttccacagcaaaatggttttgatataatt----------ttatgcagggtgctgt 127
Query: 137 aaatcattaagtacatctaatggttttgaagtacaactcacaaaaaccatttctgaattt 196
||| ||||||||||||||||| ||||||| ||||||||||||||| |||||||| ||||
Sbjct: 128 aaactattaagtacatctaatgattttgaaatacaactcacaaaaatcatttctggattt 187
Query: 197 atgcagggtgcataaggatttccttatgca 226
||||||||||||||||||||||||||||||
Sbjct: 188 atgcagggtgcataaggatttccttatgca 217
Score = 79.8 bits (40), Expect = 9e-16
Identities = 46/48 (95%)
Strand = Plus / Minus
Query: 11 tgcataagaaaatccttatgcaccctgcataaatccagaaatggtttt 58
|||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 217 tgcataaggaaatccttatgcaccctgcataaatccagaaatgatttt 170
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 179 aaaaccatttctgaatttatgcagggtgcataaggattt 217
||||||||||||| |||||||||| ||||||||||||||
Sbjct: 61 aaaaccatttctggatttatgcagagtgcataaggattt 23
>40936_mtr-MIR2652c:mirbase
Length = 227
Score = 170 bits (86), Expect = 3e-43
Identities = 196/232 (84%), Gaps = 18/232 (7%)
Strand = Plus / Plus
Query: 1 gcggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttgg 60
|||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 gcggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttgg 60
Query: 61 agtacaactcacagaaaccatttccacagtaaaatggttttggcataattgggttgggat 120
||||||||| ||| ||||||||| | || |||||||||||| ||||||| |
Sbjct: 61 agtacaacttacaaaaaccattttcccaataaaatggtttttgcataat----------t 110
Query: 121 ttatgcaaggtgctggaaatcatta-----agtacatctaatggttttgaagtacaactc 175
||||||||||||||||||||| ||| ||||| | || | || |||||||||||
Sbjct: 111 ttatgcaaggtgctggaaatccttatgcagagtac-tggaaagcatt--aagtacaactc 167
Query: 176 acaaaaaccatttctgaatttatgcagggtgcataaggatttccttatgcac 227
||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 168 acataaaccatttctggatttatgcagggtgcataaggatttccttatgcac 219
Score = 97.6 bits (49), Expect = 4e-21
Identities = 55/57 (96%)
Strand = Plus / Minus
Query: 179 aaaaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 58 aaaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 2
Score = 87.7 bits (44), Expect = 4e-18
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 10 gtgcataagaaaatccttatgcaccctgcataaatccagaaatggttt 57
||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 172
>40937_mtr-MIR2652d:mirbase
Length = 227
Score = 168 bits (85), Expect = 1e-42
Identities = 195/231 (84%), Gaps = 18/231 (7%)
Strand = Plus / Minus
Query: 2 cggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttgga 61
||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 227 cggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttgga 168
Query: 62 gtacaactcacagaaaccatttccacagtaaaatggttttggcataattgggttgggatt 121
|||||||| ||| ||||||||| | || |||||||||||| ||||||| ||
Sbjct: 167 gtacaacttacaaaaaccattttcccaataaaatggtttttgcataat----------tt 118
Query: 122 tatgcaaggtgctggaaatcatta-----agtacatctaatggttttgaagtacaactca 176
|||||||||||||||||||| ||| ||||| | || | || ||||||||||||
Sbjct: 117 tatgcaaggtgctggaaatccttatgcagagtac-tggaaagcatt--aagtacaactca 61
Query: 177 caaaaaccatttctgaatttatgcagggtgcataaggatttccttatgcac 227
|| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 60 cataaaccatttctggatttatgcagggtgcataaggatttccttatgcac 10
Score = 97.6 bits (49), Expect = 4e-21
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 179 aaaaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 171 aaaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 227
Score = 87.7 bits (44), Expect = 4e-18
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 10 gtgcataagaaaatccttatgcaccctgcataaatccagaaatggttt 57
||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 57
>40939_mtr-MIR2652f:mirbase
Length = 186
Score = 79.8 bits (40), Expect = 9e-16
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 50 aatggttttggagtacaactcacagaaaccatttccacagtaaaatggtttt 101
|||| ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 50 aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
Score = 73.8 bits (37), Expect = 5e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 141 cattaagtacatctaatggttttgaagtacaactcacaaaaaccatttc 189
|||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct: 36 cattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
Score = 73.8 bits (37), Expect = 5e-14
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 49 aaatggttttggagtacaactcacagaaaccatttccacagtaaaatggttttggcataa 108
|||||||||| |||| ||||||||| |||| |||| ||| | ||||| ||||||||||||
Sbjct: 92 aaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcataa 151
Query: 109 ttgggttgggatttatgcaaggtgc 133
|||| ||||||||||||| |||||
Sbjct: 152 -tgggctgggatttatgcagggtgc 175
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 21 aatccttatgcaccctgcataaatcc 46
||||||||||||||||||||||||||
Sbjct: 184 aatccttatgcaccctgcataaatcc 159
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 193 atttatgcagggtgcataaggatt 216
||||||||||||||||||||||||
Sbjct: 161 atttatgcagggtgcataaggatt 184
