miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40945_mtr-MIR2652l:mirbase
Length = 225
Score = 234 bits (118), Expect = 2e-62
Identities = 178/197 (90%), Gaps = 2/197 (1%)
Strand = Plus / Plus
Query: 23 aaatccttatgcactctgcataaatccagaaatggttttggagtacaattcag--aaacc 80
||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |||||
Sbjct: 20 aaatctttatgcactctgcataaatctagaaatggttttggagtacaactcacgaaaacc 79
Query: 81 atttccacagcaaaatggttttgatataattttatgcagggtgctgtaaactattaagta 140
|||| | ||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct: 80 atttttatagcaaaatggttttggcataattttatgcagggtgctggaaaccattaagta 139
Query: 141 catctaatgattttgaaatacaactcacaaaaatcatttctggatttatgcagggtgcat 200
|||||||| ||||| | ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 140 tatctaatggttttggagtacaactcacagaaaccatttctggatttatgcagggtgcat 199
Query: 201 aaggatttccttatgca 217
|||||||||||||||||
Sbjct: 200 aaggatttccttatgca 216
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 23 aaatccttatgcactctgcataaatccagaaatggttt 60
|||||||||||||| |||||||||||||||||||||||
Sbjct: 207 aaatccttatgcaccctgcataaatccagaaatggttt 170
Score = 63.9 bits (32), Expect = 5e-11
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 170 aaaatcatttctggatttatgcagggtgcataaggatttccttatgca 217
|||| ||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 58 aaaaccatttctagatttatgcagagtgcataaagatttccttatgca 11
>40942_mtr-MIR2652i:mirbase
Length = 235
Score = 222 bits (112), Expect = 9e-59
Identities = 185/210 (88%), Gaps = 12/210 (5%)
Strand = Plus / Plus
Query: 20 agaaaatccttatgcactctgcataaatccagaaatggttttggagtacaattca--gaa 77
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 17 agaaaatccttatgcaccctgcataaatccagaaatggttttggagtacaactcacagaa 76
Query: 78 accatttccacagcaaaatggttttgatataatt----------ttatgcagggtgctgt 127
||||||||||||| |||||||||||| |||||| ||||||| |||||||
Sbjct: 77 accatttccacagtaaaatggttttggcataattgggttgggatttatgcaaggtgctgg 136
Query: 128 aaactattaagtacatctaatgattttgaaatacaactcacaaaaatcatttctggattt 187
||| ||||||||||||||||| ||||||| ||||||||||||||| |||||||| ||||
Sbjct: 137 aaatcattaagtacatctaatggttttgaagtacaactcacaaaaaccatttctgaattt 196
Query: 188 atgcagggtgcataaggatttccttatgca 217
||||||||||||||||||||||||||||||
Sbjct: 197 atgcagggtgcataaggatttccttatgca 226
Score = 79.8 bits (40), Expect = 8e-16
Identities = 46/48 (95%)
Strand = Plus / Minus
Query: 170 aaaatcatttctggatttatgcagggtgcataaggatttccttatgca 217
|||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 58 aaaaccatttctggatttatgcagggtgcataaggattttcttatgca 11
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 23 aaatccttatgcactctgcataaatccagaaatggtttt 61
|||||||||||||| |||||||||| |||||||||||||
Sbjct: 217 aaatccttatgcaccctgcataaattcagaaatggtttt 179
>40935_mtr-MIR2652b:mirbase
Length = 235
Score = 192 bits (97), Expect = 8e-50
Identities = 179/207 (86%), Gaps = 12/207 (5%)
Strand = Plus / Plus
Query: 23 aaatccttatgcactctgcataaatccagaaatggttttggagtacaattca--gaaacc 80
||||| |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 20 aaatctttatgcaccctgcataaatccagaaatggttttggagtacaactcacagaaacc 79
Query: 81 atttccacagcaaaatggttttgatataatt----------ttatgcagggtgctgtaaa 130
||||||||| ||||||| ||||| |||||| |||||||| |||||| |||
Sbjct: 80 atttccacatcaaaatgattttggcataattgggctgggatttatgcagagtgctggaaa 139
Query: 131 ctattaagtacatctaatgattttgaaatacaactcacaaaaatcatttctggatttatg 190
| ||||||||||||||||||||||| | ||| ||||||||||| ||||| || |||||||
Sbjct: 140 ccattaagtacatctaatgattttgtagtacgactcacaaaaaccatttttgaatttatg 199
Query: 191 cagggtgcataaggatttccttatgca 217
|||||||||||||||||||||||||||
Sbjct: 200 cagggtgcataaggatttccttatgca 226
Score = 79.8 bits (40), Expect = 8e-16
Identities = 46/48 (95%)
Strand = Plus / Minus
Query: 170 aaaatcatttctggatttatgcagggtgcataaggatttccttatgca 217
|||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 58 aaaaccatttctggatttatgcagggtgcataaagatttccttatgca 11
Score = 54.0 bits (27), Expect = 5e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 23 aaatccttatgcactctgcataaatccagaaatggtttt 61
|||||||||||||| |||||||||| || ||||||||||
Sbjct: 217 aaatccttatgcaccctgcataaattcaaaaatggtttt 179
>40940_mtr-MIR2652g:mirbase
Length = 234
Score = 174 bits (88), Expect = 2e-44
Identities = 179/210 (85%), Gaps = 12/210 (5%)
Strand = Plus / Minus
Query: 20 agaaaatccttatgcactctgcataaatccagaaatggttttggagtacaattca--gaa 77
||||||||||||||||| |||||||||| |||||||||||||||||| || ||| |||
Sbjct: 219 agaaaatccttatgcaccctgcataaatttagaaatggttttggagtataactcacagaa 160
Query: 78 accatttccacagcaaaatggttttgatataatt----------ttatgcagggtgctgt 127
|||||||||| |||||||||||||| |||||| |||||||| ||||||
Sbjct: 159 accatttccatagcaaaatggttttagcataattgggctggaatttatgcagagtgctgg 100
Query: 128 aaactattaagtacatctaatgattttgaaatacaactcacaaaaatcatttctggattt 187
|||| ||||| ||||||||||| ||||| | |||| |||||| |||||||||||||||||
Sbjct: 99 aaaccattaattacatctaatggttttggagtacagctcacagaaatcatttctggattt 40
Query: 188 atgcagggtgcataaggatttccttatgca 217
|||||||||||||||| |||||||||||||
Sbjct: 39 atgcagggtgcataagaatttccttatgca 10
Score = 63.9 bits (32), Expect = 5e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 170 aaaatcatttctggatttatgcagggtgcataaggatttccttatgca 217
|||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 178 aaaaccatttctaaatttatgcagggtgcataaggattttcttatgca 225
Score = 52.0 bits (26), Expect = 2e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 23 aaatccttatgcactctgcataaatccagaaatg 56
|||| ||||||||| |||||||||||||||||||
Sbjct: 19 aaattcttatgcaccctgcataaatccagaaatg 52
>40934_mtr-MIR2652a:mirbase
Length = 247
Score = 161 bits (81), Expect = 3e-40
Identities = 181/219 (82%), Gaps = 24/219 (10%)
Strand = Plus / Plus
Query: 23 aaatccttatgcactctgcataaatccagaaatggttttggagtacaatt--cagaaacc 80
|||| ||||||||| ||||||||||||| |||| |||||||||||||| | || |||||
Sbjct: 20 aaattcttatgcaccctgcataaatccataaatagttttggagtacaactaacaaaaacc 79
Query: 81 atttccacagcaaaatggttttgatataatttta----------------------tgca 118
|||||||||||||||||||||||| ||||||||| ||||
Sbjct: 80 atttccacagcaaaatggttttgacataattttatgcagggtgctggaaatccttatgca 139
Query: 119 gggtgctgtaaactattaagtacatctaatgattttgaaatacaactcacaaaaatcatt 178
|||||||| |||| ||||||||||||||||| ||||| | ||||||||||| ||| ||||
Sbjct: 140 gggtgctggaaaccattaagtacatctaatggttttggagtacaactcacagaaaccatt 199
Query: 179 tctggatttatgcagggtgcataaggatttccttatgca 217
|||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tctggatttatgcagggtgcataaggatttccttatgca 238
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 176 atttctggatttatgcagggtgcataaggatttccttatgca 217
|||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 52 atttatggatttatgcagggtgcataagaatttccttatgca 11
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 23 aaatccttatgcactctgcataaatccagaaatggttt 60
|||||||||||||| |||||||||||||||||||||||
Sbjct: 229 aaatccttatgcaccctgcataaatccagaaatggttt 192
>40938_mtr-MIR2652e:mirbase
Length = 247
Score = 153 bits (77), Expect = 7e-38
Identities = 180/219 (82%), Gaps = 24/219 (10%)
Strand = Plus / Plus
Query: 23 aaatccttatgcactctgcataaatccagaaatggttttggagtacaattcaga--aacc 80
|||||||||||||| ||||||||||||||||||| ||||||||||||| ||| | || |
Sbjct: 20 aaatccttatgcaccctgcataaatccagaaatgattttggagtacaactcacataaatc 79
Query: 81 atttccacagcaaaatggttttgatataattttatgcagggtgc---------------- 124
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 80 atttccacagcaaaatggttttgacataattttatgcagggtgctggaaatccttatgca 139
Query: 125 ------tgtaaactattaagtacatctaatgattttgaaatacaactcacaaaaatcatt 178
|| |||| || |||||||||||||| ||||||| ||||||||||| ||| ||||
Sbjct: 140 tggtgctgaaaaccatgaagtacatctaatggttttgaagtacaactcacagaaaccatt 199
Query: 179 tctggatttatgcagggtgcataaggatttccttatgca 217
||| |||||||||||||||||||||||||| ||||||||
Sbjct: 200 tctagatttatgcagggtgcataaggattttcttatgca 238
Score = 95.6 bits (48), Expect = 1e-20
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 170 aaaatcatttctggatttatgcagggtgcataaggatttccttatgca 217
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 aaaatcatttctggatttatgcagggtgcataaggatttccttatgca 11
Score = 65.9 bits (33), Expect = 1e-11
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 20 agaaaatccttatgcactctgcataaatccagaaatggttt 60
||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 232 agaaaatccttatgcaccctgcataaatctagaaatggttt 192
>40941_mtr-MIR2652h:mirbase
Length = 248
Score = 139 bits (70), Expect = 1e-33
Identities = 98/106 (92%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 112 ttatgcagggtgctgtaaactattaagtacatctaatgattttgaaatacaactcacaaa 171
||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||| |
Sbjct: 134 ttatgcagggtgctggaaaccattaagtacatctaatggttttgaagtacaactcacaga 193
Query: 172 aatcatttctggatttatgcagggtgcataaggatttccttatgca 217
|| |||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 194 aaccatttccggatttatgcagggtgcataagga-ttccttatgca 238
Score = 73.8 bits (37), Expect = 5e-14
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 170 aaaatcatttctggatttatgcagggtgcataaggatttccttat 214
||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 59 aaaatcatttctgaatttatgcagggtgcataaagatttccttat 15
Score = 58.0 bits (29), Expect = 3e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 24 aatccttatgcactctgcataaatccagaaatggttt 60
||||||||||||| |||||||||||| ||||||||||
Sbjct: 229 aatccttatgcaccctgcataaatccggaaatggttt 193
>40944_mtr-MIR2652k:mirbase
Length = 232
Score = 133 bits (67), Expect = 6e-32
Identities = 97/107 (90%)
Strand = Plus / Plus
Query: 111 tttatgcagggtgctgtaaactattaagtacatctaatgattttgaaatacaactcacaa 170
|||||||||||||||| |||| ||||| ||||||||||||||||| | ||||| |||| |
Sbjct: 117 tttatgcagggtgctggaaaccattaaatacatctaatgattttggagtacaattcacta 176
Query: 171 aaatcatttctggatttatgcagggtgcataaggatttccttatgca 217
||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 177 aaaccatttatagatttatgcagggtgcataaggatttccttatgca 223
Score = 54.0 bits (27), Expect = 5e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 23 aaatccttatgcactctgcataaatccagaaatggtttt 61
|||||||||||||| ||||||||||| | ||||||||||
Sbjct: 214 aaatccttatgcaccctgcataaatctataaatggtttt 176
Score = 48.1 bits (24), Expect = 3e-06
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 170 aaaatcatttctggatttatgcagggtgcataaggatttccttatgca 217
|||| ||||| | |||||||||| | ||||||||||||||||||||||
Sbjct: 55 aaaaccatttttagatttatgcaag-tgcataaggatttccttatgca 9
>40937_mtr-MIR2652d:mirbase
Length = 227
Score = 113 bits (57), Expect = 6e-26
Identities = 167/202 (82%), Gaps = 10/202 (4%)
Strand = Plus / Minus
Query: 23 aaatccttatgcactctgcataaatccagaaatggttttggagtacaatt--cagaaacc 80
|||||||||||||| |||||||||| |||||||||||||||||||||| | || |||||
Sbjct: 209 aaatccttatgcaccctgcataaattcagaaatggttttggagtacaacttacaaaaacc 150
Query: 81 atttccacagcaaaatggttttgatataattttatgcagggtgctgtaaactatta---- 136
|||| | || ||||||||||| ||||||||||||| ||||||| ||| |||
Sbjct: 149 attttcccaataaaatggtttttgcataattttatgcaaggtgctggaaatccttatgca 90
Query: 137 -agtacatctaatgattttgaaatacaactcacaaaaatcatttctggatttatgcaggg 195
||||| || ||| || ||||||||||| ||| |||||||||||||||||||||
Sbjct: 89 gagtactggaaagcatt---aagtacaactcacataaaccatttctggatttatgcaggg 33
Query: 196 tgcataaggatttccttatgca 217
||||||||||||||||||||||
Sbjct: 32 tgcataaggatttccttatgca 11
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 23 aaatccttatgcactctgcataaatccagaaatggttt 60
|||||||||||||| |||||||||||||||||||||||
Sbjct: 20 aaatccttatgcaccctgcataaatccagaaatggttt 57
Score = 65.9 bits (33), Expect = 1e-11
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 170 aaaatcatttctggatttatgcagggtgcataaggatttccttat 214
|||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 171 aaaaccatttctgaatttatgcagggtgcataaggatttcgttat 215
>40936_mtr-MIR2652c:mirbase
Length = 227
Score = 113 bits (57), Expect = 6e-26
Identities = 167/202 (82%), Gaps = 10/202 (4%)
Strand = Plus / Plus
Query: 23 aaatccttatgcactctgcataaatccagaaatggttttggagtacaatt--cagaaacc 80
|||||||||||||| |||||||||| |||||||||||||||||||||| | || |||||
Sbjct: 20 aaatccttatgcaccctgcataaattcagaaatggttttggagtacaacttacaaaaacc 79
Query: 81 atttccacagcaaaatggttttgatataattttatgcagggtgctgtaaactatta---- 136
|||| | || ||||||||||| ||||||||||||| ||||||| ||| |||
Sbjct: 80 attttcccaataaaatggtttttgcataattttatgcaaggtgctggaaatccttatgca 139
Query: 137 -agtacatctaatgattttgaaatacaactcacaaaaatcatttctggatttatgcaggg 195
||||| || ||| || ||||||||||| ||| |||||||||||||||||||||
Sbjct: 140 gagtactggaaagcatt---aagtacaactcacataaaccatttctggatttatgcaggg 196
Query: 196 tgcataaggatttccttatgca 217
||||||||||||||||||||||
Sbjct: 197 tgcataaggatttccttatgca 218
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 23 aaatccttatgcactctgcataaatccagaaatggttt 60
|||||||||||||| |||||||||||||||||||||||
Sbjct: 209 aaatccttatgcaccctgcataaatccagaaatggttt 172
Score = 65.9 bits (33), Expect = 1e-11
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 170 aaaatcatttctggatttatgcagggtgcataaggatttccttat 214
|||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct: 58 aaaaccatttctgaatttatgcagggtgcataaggatttcgttat 14
>40939_mtr-MIR2652f:mirbase
Length = 186
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 128 aaactattaagtacatctaatgattttgaaatacaactcacaaaaatcatttc 180
|||| ||||||||||||||||||||||| | ||||||||||| ||| ||||||
Sbjct: 32 aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
Score = 58.0 bits (29), Expect = 3e-09
Identities = 47/52 (90%), Gaps = 2/52 (3%)
Strand = Plus / Plus
Query: 53 aatggttttggagtacaattca--gaaaccatttccacagcaaaatggtttt 102
|||| ||||||||||||| ||| |||||||||||||| |||||||||||||
Sbjct: 50 aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 182 ggatttatgcagggtgcataaggatt 207
||||||||||||||||||||||||||
Sbjct: 159 ggatttatgcagggtgcataaggatt 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 24 aatccttatgcactctgcataaatcc 49
||||||||||||| ||||||||||||
Sbjct: 184 aatccttatgcaccctgcataaatcc 159
