miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40942_mtr-MIR2652i:mirbase
Length = 235
Score = 262 bits (132), Expect = 1e-70
Identities = 208/235 (88%), Gaps = 10/235 (4%)
Strand = Plus / Plus
Query: 1 gcggttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttttgg 60
||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 1 gcggttatggtgcataagaaaatccttatgcaccctgcataaatccagaaatggttttgg 60
Query: 61 agtacaactcacgaaaaccatttttatagcaaaatggttttggcataatt---------- 110
|||||||||||| ||||||||| | || ||||||||||||||||||||
Sbjct: 61 agtacaactcacagaaaccatttccacagtaaaatggttttggcataattgggttgggat 120
Query: 111 ttatgcagggtgctggaaaccattaagtatatctaatggttttggagtacaactcacaga 170
||||||| ||||||||||| ||||||||| |||||||||||||| ||||||||||||| |
Sbjct: 121 ttatgcaaggtgctggaaatcattaagtacatctaatggttttgaagtacaactcacaaa 180
Query: 171 aaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccg 225
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaccatttctgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
Score = 103 bits (52), Expect = 6e-23
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 170 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccg 225
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 57 aaaccatttctggatttatgcagggtgcataaggattttcttatgcaccataaccg 2
Score = 73.8 bits (37), Expect = 5e-14
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 2 cggttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggtttt 58
|||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct: 235 cggttatggtgcataaggaaatccttatgcaccctgcataaattcagaaatggtttt 179
>40935_mtr-MIR2652b:mirbase
Length = 235
Score = 254 bits (128), Expect = 3e-68
Identities = 207/235 (88%), Gaps = 10/235 (4%)
Strand = Plus / Plus
Query: 1 gcggttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttttgg 60
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 1 gcggttatggtgcataaggaaatctttatgcaccctgcataaatccagaaatggttttgg 60
Query: 61 agtacaactcacgaaaaccatttttatagcaaaatggttttggcataatt---------- 110
|||||||||||| ||||||||| | | ||||||| |||||||||||||
Sbjct: 61 agtacaactcacagaaaccatttccacatcaaaatgattttggcataattgggctgggat 120
Query: 111 ttatgcagggtgctggaaaccattaagtatatctaatggttttggagtacaactcacaga 170
|||||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||||| |
Sbjct: 121 ttatgcagagtgctggaaaccattaagtacatctaatgattttgtagtacgactcacaaa 180
Query: 171 aaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccg 225
|||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaccatttttgaatttatgcagggtgcataaggatttccttatgcaccataaccg 235
Score = 103 bits (52), Expect = 6e-23
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 170 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccg 225
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 57 aaaccatttctggatttatgcagggtgcataaagatttccttatgcaccataaccg 2
Score = 65.9 bits (33), Expect = 1e-11
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 2 cggttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggtttt 58
|||||||| |||||||||||||| |||||||| |||||||||| | ||||||||||
Sbjct: 235 cggttatggtgcataaggaaatccttatgcaccctgcataaattcaaaaatggtttt 179
>40940_mtr-MIR2652g:mirbase
Length = 234
Score = 250 bits (126), Expect = 4e-67
Identities = 205/233 (87%), Gaps = 10/233 (4%)
Strand = Plus / Minus
Query: 2 cggttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttttgga 61
|||||||| |||||||| ||||| |||||||| |||||||||| ||||||||||||||||
Sbjct: 234 cggttatggtgcataagaaaatccttatgcaccctgcataaatttagaaatggttttgga 175
Query: 62 gtacaactcacgaaaaccatttttatagcaaaatggttttggcataatt----------t 111
||| ||||||| ||||||||| |||||||||||||||| |||||||| |
Sbjct: 174 gtataactcacagaaaccatttccatagcaaaatggttttagcataattgggctggaatt 115
Query: 112 tatgcagggtgctggaaaccattaagtatatctaatggttttggagtacaactcacagaa 171
||||||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct: 114 tatgcagagtgctggaaaccattaattacatctaatggttttggagtacagctcacagaa 55
Query: 172 accatttctggatttatgcagggtgcataaggatttccttatgcaccataacc 224
| ||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 54 atcatttctggatttatgcagggtgcataagaatttccttatgcaccgtaacc 2
Score = 87.7 bits (44), Expect = 3e-18
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 170 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccg 225
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 179 aaaccatttctaaatttatgcagggtgcataaggattttcttatgcaccataaccg 234
Score = 54.0 bits (27), Expect = 5e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 11 tgcataaggaaatctttatgcactctgcataaatctagaaatg 53
||||||||||||| |||||||| ||||||||||| |||||||
Sbjct: 10 tgcataaggaaattcttatgcaccctgcataaatccagaaatg 52
>40943_mtr-MIR2652j:mirbase
Length = 226
Score = 234 bits (118), Expect = 2e-62
Identities = 178/197 (90%), Gaps = 2/197 (1%)
Strand = Plus / Plus
Query: 20 aaatctttatgcactctgcataaatctagaaatggttttggagtacaactcacgaaaacc 79
||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |||||
Sbjct: 23 aaatccttatgcactctgcataaatccagaaatggttttggagtacaattcag--aaacc 80
Query: 80 atttttatagcaaaatggttttggcataattttatgcagggtgctggaaaccattaagta 139
|||| | ||||||||||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct: 81 atttccacagcaaaatggttttgatataattttatgcagggtgctgtaaactattaagta 140
Query: 140 tatctaatggttttggagtacaactcacagaaaccatttctggatttatgcagggtgcat 199
|||||||| ||||| | ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 141 catctaatgattttgaaatacaactcacaaaaatcatttctggatttatgcagggtgcat 200
Query: 200 aaggatttccttatgca 216
|||||||||||||||||
Sbjct: 201 aaggatttccttatgca 217
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 170 aaaccatttctggatttatgcagggtgcataaggattt 207
||||||||||||||||||||||| ||||||||||||||
Sbjct: 60 aaaccatttctggatttatgcagagtgcataaggattt 23
Score = 63.9 bits (32), Expect = 5e-11
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 11 tgcataaggaaatctttatgcactctgcataaatctagaaatggtttt 58
|||||||||||||| |||||||| ||||||||||| ||||||| ||||
Sbjct: 217 tgcataaggaaatccttatgcaccctgcataaatccagaaatgatttt 170
>40934_mtr-MIR2652a:mirbase
Length = 247
Score = 224 bits (113), Expect = 2e-59
Identities = 204/240 (85%), Gaps = 22/240 (9%)
Strand = Plus / Plus
Query: 5 ttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttttggagta 64
||||| ||||||||||||| |||||||| ||||||||||| | |||| |||||||||||
Sbjct: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatccataaatagttttggagta 64
Query: 65 caactcacgaaaaccatttttatagcaaaatggttttggcataatttta----------- 113
||||| || |||||||||| | ||||||||||||||| ||||||||||
Sbjct: 65 caactaacaaaaaccatttccacagcaaaatggttttgacataattttatgcagggtgct 124
Query: 114 -----------tgcagggtgctggaaaccattaagtatatctaatggttttggagtacaa 162
|||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 125 ggaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttggagtacaa 184
Query: 163 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 244
Score = 81.8 bits (41), Expect = 2e-16
Identities = 50/53 (94%)
Strand = Plus / Minus
Query: 170 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 222
|||| |||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 57 aaactatttatggatttatgcagggtgcataagaatttccttatgcaccataa 5
Score = 73.8 bits (37), Expect = 5e-14
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 5 ttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttt 57
||||| |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 244 ttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 192
>40941_mtr-MIR2652h:mirbase
Length = 248
Score = 214 bits (108), Expect = 2e-56
Identities = 209/247 (84%), Gaps = 23/247 (9%)
Strand = Plus / Plus
Query: 1 gcggttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttttgg 60
||||||||| || |||||||||||||||||||| |||||||||| ||||||| ||||||
Sbjct: 2 gcggttatggtgtataaggaaatctttatgcaccctgcataaattcagaaatgattttgg 61
Query: 61 agtacaactcacgaaaaccatttttatagcaaaatggttttggcataatttta------- 113
|||||||| ||| ||||||||| |||||||||| |||||||||||||||||
Sbjct: 62 agtacaacacacagaaaccatttccatagcaaaatagttttggcataattttatgtaagg 121
Query: 114 ---------------tgcagggtgctggaaaccattaagtatatctaatggttttggagt 158
|||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 122 tgctgaaaatccttatgcagggtgctggaaaccattaagtacatctaatggttttgaagt 181
Query: 159 acaactcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcacc 218
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 182 acaactcacagaaaccatttccggatttatgcagggtgcataagga-ttccttatgcacc 240
Query: 219 ataaccg 225
|||||||
Sbjct: 241 ataaccg 247
Score = 79.8 bits (40), Expect = 8e-16
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 174 catttctggatttatgcagggtgcataaggatttccttatgcaccataaccg 225
|||||||| ||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 54 catttctgaatttatgcagggtgcataaagatttccttatacaccataaccg 3
Score = 58.0 bits (29), Expect = 3e-09
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 1 gcggttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttt 57
||||||||| ||||||||||| || |||||||| ||||||||||| ||||||||||
Sbjct: 248 gcggttatggtgcataaggaa-tccttatgcaccctgcataaatccggaaatggttt 193
>40938_mtr-MIR2652e:mirbase
Length = 247
Score = 206 bits (104), Expect = 5e-54
Identities = 204/243 (83%), Gaps = 22/243 (9%)
Strand = Plus / Plus
Query: 5 ttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttttggagta 64
||||| |||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 5 ttatggtgcataaggaaatccttatgcaccctgcataaatccagaaatgattttggagta 64
Query: 65 caactcacgaaaaccatttttatagcaaaatggttttggcataattttatgcagggtgct 124
|||||||| ||| ||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct: 65 caactcacataaatcatttccacagcaaaatggttttgacataattttatgcagggtgct 124
Query: 125 ggaaa----------------------ccattaagtatatctaatggttttggagtacaa 162
||||| |||| ||||| |||||||||||||| |||||||
Sbjct: 125 ggaaatccttatgcatggtgctgaaaaccatgaagtacatctaatggttttgaagtacaa 184
Query: 163 ctcacagaaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataa 222
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 185 ctcacagaaaccatttctagatttatgcagggtgcataaggattttcttatgcaccataa 244
Query: 223 ccg 225
|||
Sbjct: 245 ccg 247
Score = 97.6 bits (49), Expect = 4e-21
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 174 catttctggatttatgcagggtgcataaggatttccttatgcaccataa 222
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 catttctggatttatgcagggtgcataaggatttccttatgcaccataa 5
Score = 79.8 bits (40), Expect = 8e-16
Identities = 52/56 (92%)
Strand = Plus / Minus
Query: 2 cggttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttt 57
|||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 247 cggttatggtgcataagaaaatccttatgcaccctgcataaatctagaaatggttt 192
>40944_mtr-MIR2652k:mirbase
Length = 232
Score = 202 bits (102), Expect = 8e-53
Identities = 191/221 (86%), Gaps = 11/221 (4%)
Strand = Plus / Plus
Query: 11 tgcataaggaaatctttatgcactctgcataaatctagaaatggttttggagtacaactc 70
|||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||
Sbjct: 9 tgcataaggaaatccttatgcact-tgcataaatctaaaaatggttttggagtgtaactc 67
Query: 71 acgaaaaccatttttatagcaaaatggttttggcataatt----------ttatgcaggg 120
|| | |||||||| | | |||||| |||||||||||||| ||||||||||
Sbjct: 68 acatagaccattttcacatcaaaatagttttggcataattgggttgggatttatgcaggg 127
Query: 121 tgctggaaaccattaagtatatctaatggttttggagtacaactcacagaaaccatttct 180
|||||||||||||||| || |||||||| ||||||||||||| |||| ||||||||| |
Sbjct: 128 tgctggaaaccattaaatacatctaatgattttggagtacaattcactaaaaccatttat 187
Query: 181 ggatttatgcagggtgcataaggatttccttatgcaccata 221
||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 agatttatgcagggtgcataaggatttccttatgcaccata 228
Score = 73.8 bits (37), Expect = 5e-14
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 6 tatgatgcataaggaaatctttatgcactctgcataaatctagaaatggtttt 58
|||| |||||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct: 228 tatggtgcataaggaaatccttatgcaccctgcataaatctataaatggtttt 176
Score = 56.0 bits (28), Expect = 1e-08
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 170 aaaccatttctggatttatgcagggtgcataaggatttccttatgcac 217
||||||||| | |||||||||| | |||||||||||||||||||||||
Sbjct: 54 aaaccatttttagatttatgcaag-tgcataaggatttccttatgcac 8
>40936_mtr-MIR2652c:mirbase
Length = 227
Score = 163 bits (82), Expect = 7e-41
Identities = 187/220 (85%), Gaps = 4/220 (1%)
Strand = Plus / Plus
Query: 1 gcggttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttttgg 60
||||||||| || |||| |||||| |||||||| |||||||||| ||||||||||||||
Sbjct: 1 gcggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttgg 60
Query: 61 agtacaactcacgaaaaccatttttatagcaaaatggttttggcataattttatgcaggg 120
||||||||| || ||||||||||| | ||||||||||| ||||||||||||||| ||
Sbjct: 61 agtacaacttacaaaaaccattttcccaataaaatggtttttgcataattttatgcaagg 120
Query: 121 tgctggaaaccattaagtatatctaatgg---ttttggagtacaactcacagaaaccatt 177
||||||||| | ||| | | | || ||| | ||||||||||||| ||||||||
Sbjct: 121 tgctggaaatccttatgcaga-gtactggaaagcattaagtacaactcacataaaccatt 179
Query: 178 tctggatttatgcagggtgcataaggatttccttatgcac 217
||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tctggatttatgcagggtgcataaggatttccttatgcac 219
Score = 87.7 bits (44), Expect = 3e-18
Identities = 53/56 (94%)
Strand = Plus / Minus
Query: 170 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccg 225
|||||||||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 57 aaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 2
Score = 69.9 bits (35), Expect = 8e-13
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 11 tgcataaggaaatctttatgcactctgcataaatctagaaatggttt 57
|||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 218 tgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 172
>40937_mtr-MIR2652d:mirbase
Length = 227
Score = 161 bits (81), Expect = 3e-40
Identities = 186/219 (84%), Gaps = 4/219 (1%)
Strand = Plus / Minus
Query: 2 cggttatgatgcataaggaaatctttatgcactctgcataaatctagaaatggttttgga 61
|||||||| || |||| |||||| |||||||| |||||||||| |||||||||||||||
Sbjct: 227 cggttatggtgtataacgaaatccttatgcaccctgcataaattcagaaatggttttgga 168
Query: 62 gtacaactcacgaaaaccatttttatagcaaaatggttttggcataattttatgcagggt 121
|||||||| || ||||||||||| | ||||||||||| ||||||||||||||| |||
Sbjct: 167 gtacaacttacaaaaaccattttcccaataaaatggtttttgcataattttatgcaaggt 108
Query: 122 gctggaaaccattaagtatatctaatgg---ttttggagtacaactcacagaaaccattt 178
|||||||| | ||| | | | || ||| | ||||||||||||| |||||||||
Sbjct: 107 gctggaaatccttatgcaga-gtactggaaagcattaagtacaactcacataaaccattt 49
Query: 179 ctggatttatgcagggtgcataaggatttccttatgcac 217
|||||||||||||||||||||||||||||||||||||||
Sbjct: 48 ctggatttatgcagggtgcataaggatttccttatgcac 10
Score = 87.7 bits (44), Expect = 3e-18
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 170 aaaccatttctggatttatgcagggtgcataaggatttccttatgcaccataaccg 225
|||||||||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 172 aaaccatttctgaatttatgcagggtgcataaggatttcgttatacaccataaccg 227
Score = 69.9 bits (35), Expect = 8e-13
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 11 tgcataaggaaatctttatgcactctgcataaatctagaaatggttt 57
|||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct: 11 tgcataaggaaatccttatgcaccctgcataaatccagaaatggttt 57
>40939_mtr-MIR2652f:mirbase
Length = 186
Score = 89.7 bits (45), Expect = 9e-19
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 127 aaaccattaagtatatctaatggttttggagtacaactcacagaaaccatttc 179
||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 32 aaaccattaagtacatctaatgattttggagtacaactcacagaaaccatttc 84
Score = 58.0 bits (29), Expect = 3e-09
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 49 aaatggttttggagtacaactcacgaaaaccatttttatagcaaaatggttttggcataa 108
|||||||||| |||| |||||||| ||||| ||||| | ||||||| ||||||||||||
Sbjct: 92 aaatggttttagagtccaactcacaaaaactattttcactgcaaaatagttttggcataa 151
Query: 109 t 109
|
Sbjct: 152 t 152
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 181 ggatttatgcagggtgcataaggatt 206
||||||||||||||||||||||||||
Sbjct: 159 ggatttatgcagggtgcataaggatt 184
Score = 48.1 bits (24), Expect = 3e-06
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 50 aatggttttggagtacaactcacgaaaaccatttttatagcaaaatggtttt 101
|||| |||||||||||||||||| ||||||||| | |||||||||||||
Sbjct: 50 aatgattttggagtacaactcacagaaaccatttccactgcaaaatggtttt 101
