miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41301_ptc-MIR159c:mirbase
          Length = 183

 Score =  355 bits (179), Expect = 7e-99
 Identities = 182/183 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60

                                                                       
Query: 61  taagctatggatccacagtcctatctatcaactgaaggataggtttgcggcttgcatatc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61  taagctatggatccacagtcctatctatcaaccgaaggataggtttgcggcttgcatatc 120

                                                                       
Query: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180

              
Query: 181 taa 183
           |||
Sbjct: 181 taa 183




>41300_ptc-MIR159b:mirbase
          Length = 187

 Score =  133 bits (67), Expect = 5e-32
 Identities = 156/182 (85%), Gaps = 4/182 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
           ||||| |||||||||||||||||||||||||||| | || ||||||||||||  ||||||
Sbjct: 1   gattatggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgc 60

                                                                       
Query: 61  taagctatggatcc-acagtcctatct--atcaa-ctgaaggataggtttgcggcttgca 116
           | ||||||| |||| |||| ||||||   ||||  |     ||| ||  |||||||||||
Sbjct: 61  tgagctatgaatcccacagccctatcaccatcagtcattttgatgggcctgcggcttgca 120

                                                                       
Query: 117 tatctcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaa 176
           |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||
Sbjct: 121 tatctcaggagctttattacctaatgttagatctttttttggattgaagggagctctaaa 180

             
Query: 177 cc 178
           ||
Sbjct: 181 cc 182




>40338_rco-MIR159:mirbase
          Length = 180

 Score =  103 bits (52), Expect = 5e-23
 Identities = 146/175 (83%), Gaps = 8/175 (4%)
 Strand = Plus / Plus

                                                                       
Query: 8   gagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagcta 67
           ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||
Sbjct: 1   gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 60

                                                                       
Query: 68  tggat-ccacagtcctat------ctatca-actgaaggataggtttgcggcttgcatat 119
           ||||| |||||| |||||        || | | |   ||||||| ||| |||||||||||
Sbjct: 61  tggatcccacagccctataagcagagattataattttggataggcttgtggcttgcatat 120

                                                                  
Query: 120 ctcaggagctttattgcctaatgttagatccctttttggattgaagggagctcta 174
           ||||||||||| ||| |||  | |||||||| | |||||||||||||||||||||
Sbjct: 121 ctcaggagcttcattaccttgtattagatccttgtttggattgaagggagctcta 175




>40397_ahy-MIR159:mirbase
          Length = 197

 Score = 99.6 bits (50), Expect = 7e-22
 Identities = 62/66 (93%)
 Strand = Plus / Plus

                                                                      
Query: 9  agtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctat 68
          |||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||||
Sbjct: 1  agtggagctccttgaagtccaacagagggtcttggtgggtagattgagctgctaagctat 60

                
Query: 69 ggatcc 74
          ||||||
Sbjct: 61 ggatcc 66



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 145 agatccctttttggattgaagggagctcta 174
           |||||| | |||||||||||||||||||||
Sbjct: 148 agatccttatttggattgaagggagctcta 177




>41572_vvi-MIR159c:mirbase
          Length = 190

 Score = 87.7 bits (44), Expect = 3e-18
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                      
Query: 7  ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
          |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |  |
Sbjct: 5  ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 64

                  
Query: 67 atggatcc 74
          ||||||||
Sbjct: 65 atggatcc 72




>41218_csi-MIR159:mirbase
          Length = 216

 Score = 83.8 bits (42), Expect = 4e-17
 Identities = 77/86 (89%), Gaps = 2/86 (2%)
 Strand = Plus / Plus

                                                                      
Query: 7  ggagtggagctccttgaagtccaatagaggttcttgc-tgggtagattaagctgctaagc 65
          |||||||||||||||||||||||| ||||||||| ||  ||||| ||| ||||||| |||
Sbjct: 8  ggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagc 67

                                    
Query: 66 tatggat-ccacagtcctatctatca 90
          ||||||| |||||||||||| |||||
Sbjct: 68 tatggatcccacagtcctatgtatca 93



 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 152 tttttggattgaagggagctcta 174
           |||||||||||||||||||||||
Sbjct: 184 tttttggattgaagggagctcta 206




>41024_pvu-MIR159a:mirbase
          Length = 174

 Score = 81.8 bits (41), Expect = 2e-16
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                      
Query: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
          |||||||||||||||||||||| |||| |||| |||||| |||| ||||||| |||||||
Sbjct: 1  gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60

               
Query: 70 gatcc 74
          |||||
Sbjct: 61 gatcc 65



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 tttggattgaagggagctcta 174
           |||||||||||||||||||||
Sbjct: 153 tttggattgaagggagctcta 173




>41023_pvu-MIR159a:mirbase
          Length = 174

 Score = 81.8 bits (41), Expect = 2e-16
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                      
Query: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
          |||||||||||||||||||||| |||| |||| |||||| |||| ||||||| |||||||
Sbjct: 1  gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60

               
Query: 70 gatcc 74
          |||||
Sbjct: 61 gatcc 65



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 tttggattgaagggagctcta 174
           |||||||||||||||||||||
Sbjct: 153 tttggattgaagggagctcta 173




>40432_gma-MIR159a:mirbase
          Length = 214

 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                      
Query: 9  agtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctat 68
          ||||||||||||||||||||||| |||| |||| ||||||  ||| ||||||| ||||||
Sbjct: 19 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 78

                
Query: 69 ggatcc 74
          ||||||
Sbjct: 79 ggatcc 84



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 154 tttggattgaagggagctctaaaccc 179
           ||||||||||||||||||||| ||||
Sbjct: 175 tttggattgaagggagctctacaccc 200




>41528_sly-MIR159:mirbase
          Length = 177

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 66/79 (83%), Gaps = 2/79 (2%)
 Strand = Plus / Plus

                                                                       
Query: 98  gataggtttgcggcttgcatatctcaggagctttattg--cctaatgttagatccctttt 155
           |||||||||  || |||||||| ||||||||||||||   ||   |||| ||||  ||||
Sbjct: 99  gataggttttgggtttgcatatgtcaggagctttattttaccctttgtttgatcattttt 158

                              
Query: 156 tggattgaagggagctcta 174
           |||||||||||||||||||
Sbjct: 159 tggattgaagggagctcta 177



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tggagctccttgaagtccaa 30
          ||||||||||||||||||||
Sbjct: 1  tggagctccttgaagtccaa 20




>39804_aly-MIR159a:mirbase
          Length = 222

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 109 ggcttgcatatctcaggagcttta 132
           ||||||||||||||||||||||||
Sbjct: 131 ggcttgcatatctcaggagcttta 154



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 54 aagctgctaagctatggatcc 74
          |||||||||||||||||||||
Sbjct: 65 aagctgctaagctatggatcc 85



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 tttggattgaagggagctcta 174
           |||||||||||||||||||||
Sbjct: 183 tttggattgaagggagctcta 203




>39805_aly-MIR159b:mirbase
          Length = 202

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 54/63 (85%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                      
Query: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaa-gctgctaagctatgga 71
          |||||||||||||| |||| |||| | | || ||||| | ||| ||||||||||||||||
Sbjct: 17 gagctccttgaagttcaatggagggtttagcagggtaaagtaaagctgctaagctatgga 76

             
Query: 72 tcc 74
          |||
Sbjct: 77 tcc 79



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 tttggattgaagggagctct 173
           ||||||||||||||||||||
Sbjct: 169 tttggattgaagggagctct 188




>42635_tae-MIR159b:mirbase
          Length = 255

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 149 ccctttttggattgaagggagctct 173
           |||| ||||||||||||||||||||
Sbjct: 225 ccctctttggattgaagggagctct 249




>41917_osa-MIR159a:mirbase
          Length = 272

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 149 ccctttttggattgaagggagctct 173
           |||| ||||||||||||||||||||
Sbjct: 237 ccctctttggattgaagggagctct 261




>41916_osa-MIR159a:mirbase
          Length = 272

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 149 ccctttttggattgaagggagctct 173
           |||| ||||||||||||||||||||
Sbjct: 237 ccctctttggattgaagggagctct 261




>40657_mtr-MIR159a:mirbase
          Length = 183

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 tttggattgaagggagctcta 174
           |||||||||||||||||||||
Sbjct: 152 tttggattgaagggagctcta 172