miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41417_ptc-MIR393a:mirbase
          Length = 85

 Score = 71.9 bits (36), Expect = 7e-14
 Identities = 73/84 (86%), Gaps = 6/84 (7%)
 Strand = Plus / Plus

                                                                      
Query: 2  gaggaggcatccaaagggatcgcattgatcccaa---act---ctccatgtctttggatc 55
          ||||||||||||||||||||||||||||||||||    ||   | ||||   ||||||||
Sbjct: 2  gaggaggcatccaaagggatcgcattgatcccaagtgtctgtcccccataattttggatc 61

                                  
Query: 56 atgctatccctttggattcctcct 79
          ||||||||||||||||||||||||
Sbjct: 62 atgctatccctttggattcctcct 85




>41132_tcc-MIR393a:mirbase
          Length = 118

 Score = 71.9 bits (36), Expect = 7e-14
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 48  tttggatcatgctatccctttggattcctcctttgg 83
           ||||||||||||||||||||||||||||||||||||
Sbjct: 75  tttggatcatgctatccctttggattcctcctttgg 110



 Score = 61.9 bits (31), Expect = 6e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 2  gaggaggcatccaaagggatcgcattgatcc 32
          |||||||||||||||||||||||||||||||
Sbjct: 12 gaggaggcatccaaagggatcgcattgatcc 42




>40470_gma-MIR393:mirbase
          Length = 120

 Score = 71.9 bits (36), Expect = 7e-14
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 1  ggaggaggcatccaaagggatcgcattgatcccaaa 36
          ||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggaggaggcatccaaagggatcgcattgatcccaaa 36



 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 51  ggatcatgctatccctttggattcctccttt 81
           ||||||||||||||||||||||| |||||||
Sbjct: 90  ggatcatgctatccctttggatttctccttt 120




>41418_ptc-MIR393b:mirbase
          Length = 84

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 71/83 (85%), Gaps = 5/83 (6%)
 Strand = Plus / Plus

                                                                      
Query: 2  gaggaggcatccaaagggatcgcattgatcccaa-----actctccatgtctttggatca 56
          |||||||||||||||||||||||||||||||| |      ||  ||||   |||||||||
Sbjct: 2  gaggaggcatccaaagggatcgcattgatcccgagtgtccctggccataattttggatca 61

                                 
Query: 57 tgctatccctttggattcctcct 79
          |||||||||||||||||||||||
Sbjct: 62 tgctatccctttggattcctcct 84




>40707_mtr-MIR393b:mirbase
          Length = 119

 Score = 61.9 bits (31), Expect = 6e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 6  aggcatccaaagggatcgcattgatcccaaa 36
          |||||||||||||||||||||||||||||||
Sbjct: 1  aggcatccaaagggatcgcattgatcccaaa 31



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 51  ggatcatgctatccctttggattc 74
           ||||||||||||||||||||||||
Sbjct: 94  ggatcatgctatccctttggattc 117




>40706_mtr-MIR393:mirbase
          Length = 135

 Score = 61.9 bits (31), Expect = 6e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 2  gaggaggcatccaaagggatcgcattgatcc 32
          |||||||||||||||||||||||||||||||
Sbjct: 12 gaggaggcatccaaagggatcgcattgatcc 42



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 51  ggatcatgctatccctttggattcctccttt 81
           ||||||||| ||||||||||||| |||||||
Sbjct: 96  ggatcatgccatccctttggatttctccttt 126




>42566_sbi-MIR393:mirbase
          Length = 139

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 1  ggaggaggcatccaaagggatcgcattgatcc 32
          |||||| |||||||||||||||||||||||||
Sbjct: 10 ggaggaagcatccaaagggatcgcattgatcc 41




>41997_osa-MIR393:mirbase
          Length = 115

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  gcatccaaagggatcgcattgatcc 32
          |||||||||||||||||||||||||
Sbjct: 8  gcatccaaagggatcgcattgatcc 32




>41774_bdi-MIR393a:mirbase
          Length = 159

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  gcatccaaagggatcgcattgatcc 32
          |||||||||||||||||||||||||
Sbjct: 33 gcatccaaagggatcgcattgatcc 57




>40075_ath-MIR393a:mirbase
          Length = 133

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 48  tttggatcatgctatccctttggattcctcctt 80
           |||||||||||||||| |||||||||| |||||
Sbjct: 100 tttggatcatgctatctctttggattcatcctt 132



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 atccaaagggatcgcattgatcc 32
          |||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32




>39866_aly-MIR393b:mirbase
          Length = 169

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  gcatccaaagggatcgcattgatcc 32
          |||||||||||||||||||||||||
Sbjct: 15 gcatccaaagggatcgcattgatcc 39




>39865_aly-MIR393a:mirbase
          Length = 147

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 48  tttggatcatgctatccctttggattcctcctt 80
           |||||||||||||||| |||||||||| |||||
Sbjct: 107 tttggatcatgctatctctttggattcatcctt 139



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 atccaaagggatcgcattgatcc 32
          |||||||||||||||||||||||
Sbjct: 17 atccaaagggatcgcattgatcc 39




>41641_vvi-MIR393a:mirbase
          Length = 126

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tccaaagggatcgcattgatccca 34
          ||||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatccca 34



 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 49  ttggatcatgctatccctt 67
           |||||||||||||||||||
Sbjct: 92  ttggatcatgctatccctt 110




>41238_csi-MIR393:mirbase
          Length = 145

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 atccaaagggatcgcattgatcc 32
          |||||||||||||||||||||||
Sbjct: 20 atccaaagggatcgcattgatcc 42



 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 56  atgctatccctttggattcctcctt 80
           ||||||||||| |||||||||||||
Sbjct: 86  atgctatccctctggattcctcctt 110




>40076_ath-MIR393b:mirbase
          Length = 160

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 atccaaagggatcgcattgatcc 32
          |||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32




>42787_zma-MIR393b:mirbase
          Length = 108

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tccaaagggatcgcattgatcc 32
          ||||||||||||||||||||||
Sbjct: 2  tccaaagggatcgcattgatcc 23




>40295_bna-MIR393:mirbase
          Length = 127

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tccaaagggatcgcattgatcc 32
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatcc 22




>42788_zma-MIR393c:mirbase
          Length = 97

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tccaaagggatcgcattgatc 31
          |||||||||||||||||||||
Sbjct: 2  tccaaagggatcgcattgatc 22




>42786_zma-MIR393a:mirbase
          Length = 126

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tccaaagggatcgcattgatc 31
          |||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41




>42567_sbi-MIR393b:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tccaaagggatcgcattgatc 31
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>41999_osa-MIR393b:mirbase
          Length = 132

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tccaaagggatcgcattgatc 31
          |||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47




>41998_osa-MIR393b:mirbase
          Length = 132

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tccaaagggatcgcattgatc 31
          |||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47




>41775_bdi-MIR393b:mirbase
          Length = 174

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tccaaagggatcgcattgatc 31
          |||||||||||||||||||||
Sbjct: 42 tccaaagggatcgcattgatc 62




>41420_ptc-MIR393d:mirbase
          Length = 107

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tccaaagggatcgcattgatc 31
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>41419_ptc-MIR393c:mirbase
          Length = 107

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tccaaagggatcgcattgatc 31
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>41133_tcc-MIR393b:mirbase
          Length = 158

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tccaaagggatcgcattgatc 31
          |||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41




>41054_ghr-MIR393:mirbase
          Length = 139

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tccaaagggatcgcattgatc 31
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>40373_rco-MIR393:mirbase
          Length = 108

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tccaaagggatcgcattgatc 31
          |||||||||||||||||||||
Sbjct: 6  tccaaagggatcgcattgatc 26