miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39946_aly-MIR2111a:mirbase
Length = 141
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 aggatcgggtaatctgcatcctgaggt 40
|||||||||||||||||||||||||||
Sbjct: 10 aggatcgggtaatctgcatcctgaggt 36
>41161_tcc-MIR2111:mirbase
Length = 111
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 14 aggatcgggtaatctgcatcctgaggtctagat 46
|||| |||||||||||||||||||||| |||||
Sbjct: 12 aggaccgggtaatctgcatcctgaggtttagat 44
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 79 tgcagattacttcttcctcactgccaat 106
|||||||||| |||||||||||| ||||
Sbjct: 81 tgcagattacctcttcctcactggcaat 108
>40775_mtr-MIR2111r:mirbase
Length = 134
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 4 atattgggtcaggatcgggtaatctgcatcctgaggt 40
||||||||| ||||| || ||||||||||||||||||
Sbjct: 2 atattgggtgaggatgggataatctgcatcctgaggt 38
>40774_mtr-MIR2111q:mirbase
Length = 127
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 4 atattgggtcaggatcgggtaatctgcatcctgaggt 40
||||||||| ||||| || ||||||||||||||||||
Sbjct: 79 atattgggtgaggatgggataatctgcatcctgaggt 115
>40770_mtr-MIR2111m:mirbase
Length = 132
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 4 atattgggtcaggatcgggtaatctgcatcctgaggt 40
||||||||| ||||| || ||||||||||||||||||
Sbjct: 1 atattgggtgaggatgggataatctgcatcctgaggt 37
>40776_mtr-MIR2111s:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 5 tattgggtcaggatcgggtaatctgcatcctgaggt 40
|||||| | |||||| ||||||||||||||||||||
Sbjct: 3 tattggttaaggatccggtaatctgcatcctgaggt 38
>40773_mtr-MIR2111p:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 14 aggatcgggtaatctgcatcctgaggtctaga 45
||||| ||||||||||||||||||||| ||||
Sbjct: 12 aggatagggtaatctgcatcctgaggtttaga 43
>40647_lja-MIR2111:mirbase
Length = 153
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 aggatcgggtaatctgcatcctgaggt 40
|||||| ||||||||||||||||||||
Sbjct: 33 aggatcaggtaatctgcatcctgaggt 59
>40327_bra-MIR2111a:mirbase
Length = 161
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 aggatcgggtaatctgcatcctgaggt 40
|||| ||||||||||||||||||||||
Sbjct: 20 aggaccgggtaatctgcatcctgaggt 46
>40302_bna-MIR2111a:mirbase
Length = 151
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 aggatcgggtaatctgcatcctgaggt 40
|||| ||||||||||||||||||||||
Sbjct: 18 aggaccgggtaatctgcatcctgaggt 44
>40214_ath-MIR2111a:mirbase
Length = 159
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 aggatcgggtaatctgcatcctgaggt 40
|||| ||||||||||||||||||||||
Sbjct: 19 aggaccgggtaatctgcatcctgaggt 45
>40769_mtr-MIR2111l:mirbase
Length = 199
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 aatattgggtcaggatcgggtaatctgcatcctgaggt 40
|||||||||| ||||| | ||||||||||||||||||
Sbjct: 140 aatattgggtaaggattagataatctgcatcctgaggt 177
>40766_mtr-MIR2111i:mirbase
Length = 166
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 aatattgggtcaggatcgggtaatctgcatcctgaggt 40
|||||||||| ||||| | ||||||||||||||||||
Sbjct: 120 aatattgggtaaggattagataatctgcatcctgaggt 157
>40763_mtr-MIR2111f:mirbase
Length = 134
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 4 atattgggtcaggatcgggtaatctgcatcctgaggtctaga 45
||||||||| |||| || |||||||||||||||||| ||||
Sbjct: 1 atattgggtggggatgggataatctgcatcctgaggtttaga 42
>40759_mtr-MIR2111b:mirbase
Length = 166
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 aatattgggtcaggatcgggtaatctgcatcctgaggt 40
|||||||||| ||||| | ||||||||||||||||||
Sbjct: 120 aatattgggtaaggattagataatctgcatcctgaggt 157
>40215_ath-MIR2111b:mirbase
Length = 167
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 cgggtaatctgcatcctgaggt 40
||||||||||||||||||||||
Sbjct: 41 cgggtaatctgcatcctgaggt 62
>39947_aly-MIR2111b:mirbase
Length = 123
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 cgggtaatctgcatcctgaggt 40
||||||||||||||||||||||
Sbjct: 16 cgggtaatctgcatcctgaggt 37
>40767_mtr-MIR2111j:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 8e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 4 atattgggtcaggatcgggtaatctgcatcctgaggt 40
||||||||| ||||| | ||||||||||||||||||
Sbjct: 1 atattgggtaaggattagataatctgcatcctgaggt 37
>40771_mtr-MIR2111n:mirbase
Length = 393
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 5 tattgggtcaggatcgggtaatctgcatcctgaggt 40
|||||||| ||||| | ||||||||||||||||||
Sbjct: 336 tattgggtaaggattagataatctgcatcctgaggt 371
>40762_mtr-MIR2111e:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 5 tattgggtcaggatcgggtaatctgcatcctgaggt 40
|||||||| ||||| | ||||||||||||||||||
Sbjct: 2 tattgggtaaggattagataatctgcatcctgaggt 37
>40328_bra-MIR2111b:mirbase
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ggtaatctgcatcctgaggt 40
||||||||||||||||||||
Sbjct: 12 ggtaatctgcatcctgaggt 31
>40303_bna-MIR2111b:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ggtaatctgcatcctgaggt 40
||||||||||||||||||||
Sbjct: 18 ggtaatctgcatcctgaggt 37
