miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41711_vvi-MIR3631b:mirbase
          Length = 164

 Score =  224 bits (113), Expect = 2e-59
 Identities = 128/133 (96%)
 Strand = Plus / Plus

                                                                       
Query: 49  tttttctattcagctaaaagtaacatgttgacatcatccaatataattaaactgaaccta 108
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 19  tttttctattcagctaaaagtaacatgttgacatcatccaatataactaaactgaaccta 78

                                                                       
Query: 109 ttgataacaagttcattttagctatattggatgatgtcaacaagttacttttaactgaat 168
           ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct: 79  ttgataacaagttcattttagctatgttggatgatgtcaataagttacttttaactaaat 138

                        
Query: 169 agaaaaagccaaa 181
           | |||||||||||
Sbjct: 139 aaaaaaagccaaa 151



 Score =  105 bits (53), Expect = 1e-23
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                       
Query: 43  tttggctttttctattcagctaaaagtaacatgttgacatcatccaatataattaaactg 102
           ||||||||||| |||| || |||||||||| | |||||||||||||| |||  |||| ||
Sbjct: 151 tttggctttttttatttagttaaaagtaacttattgacatcatccaacatagctaaaatg 92

                                                                       
Query: 103 aacctattgataacaagttcattttagctatattggatgatgtcaacaagttacttttaa 162
           ||| | ||   || | ||||| ||||| |||||||||||||||||||| |||||||||| 
Sbjct: 91  aacttgttatcaataggttcagtttagttatattggatgatgtcaacatgttacttttag 32

                        
Query: 163 ctgaatagaaaaa 175
           |||||||||||||
Sbjct: 31  ctgaatagaaaaa 19



 Score = 40.1 bits (20), Expect = 7e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 agccaaaaaacaaacaccac 221
           ||||||||||||||||||||
Sbjct: 145 agccaaaaaacaaacaccac 164




>41712_vvi-MIR3631c:mirbase
          Length = 335

 Score =  155 bits (78), Expect = 2e-38
 Identities = 123/138 (89%)
 Strand = Plus / Plus

                                                                       
Query: 37  aaaatatttggctttttctattcagctaaaagtaacatgttgacatcatccaatataatt 96
           |||||||||| |||||| |||| || |||||||||||||||||||||||||||||||| |
Sbjct: 100 aaaatatttgactttttatatttagttaaaagtaacatgttgacatcatccaatataact 159

                                                                       
Query: 97  aaactgaacctattgataacaagttcattttagctatattggatgatgtcaacaagttac 156
           ||||| ||| |||| |||| ||||||| ||||   |||||||||||| ||||||||||||
Sbjct: 160 aaactcaacatattaataataagttcactttaatcatattggatgatatcaacaagttac 219

                             
Query: 157 ttttaactgaatagaaaa 174
           ||||||||||||| ||||
Sbjct: 220 ttttaactgaataaaaaa 237



 Score =  153 bits (77), Expect = 7e-38
 Identities = 190/225 (84%), Gaps = 2/225 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtggtgtttggtctttggttgaat-agaaaaagtcaaaatatttggct-ttttctatt 58
           ||||||| |||| | |||| |||||| ||||||| |||||||||||   | |||| ||||
Sbjct: 288 aggtggtatttgttttttgattgaattagaaaaaatcaaaatattttagtattttttatt 229

                                                                       
Query: 59  cagctaaaagtaacatgttgacatcatccaatataattaaactgaacctattgataacaa 118
           ||| |||||||||| |||||| |||||||||||| |||||| ||||| ||||  ||| | 
Sbjct: 228 cagttaaaagtaacttgttgatatcatccaatatgattaaagtgaacttattattaatat 169

                                                                       
Query: 119 gttcattttagctatattggatgatgtcaacaagttacttttaactgaatagaaaaagcc 178
           ||| | ||||| |||||||||||||||||||| ||||||||||||| |||| |||||| |
Sbjct: 168 gttgagtttagttatattggatgatgtcaacatgttacttttaactaaatataaaaagtc 109

                                                        
Query: 179 aaatattttggctttttctatttagccaaaaaacaaacaccacct 223
           ||||||||| |  |||| |||| || ||||||| |||||||||||
Sbjct: 108 aaatattttagtcttttatattcagacaaaaaaaaaacaccacct 64




>41713_vvi-MIR3631d:mirbase
          Length = 250

 Score =  111 bits (56), Expect = 2e-25
 Identities = 99/113 (87%), Gaps = 4/113 (3%)
 Strand = Plus / Plus

                                                                       
Query: 49  tttttctattcagctaaaagtaacatgttgacatcatccaatataattaaactgaaccta 108
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 142 tttttctattcagataaaagtaacatgttgacatcatccaatataattaaactgaacat- 200

                                                                
Query: 109 ttgataacaagttcattttagctatattggatgatgtcaacaagttactttta 161
              |||||||||||||||||  ||| |||||| || |||| |  |||||||||
Sbjct: 201 ---ataacaagttcattttaattatgttggataatatcaatagattactttta 250



 Score = 73.8 bits (37), Expect = 5e-14
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                        
Query: 131 tatattggatgatgtcaacaagttacttttaactgaatagaaaaa 175
           |||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 186 tatattggatgatgtcaacatgttacttttatctgaatagaaaaa 142