miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41711_vvi-MIR3631b:mirbase
Length = 164
Score = 224 bits (113), Expect = 2e-59
Identities = 128/133 (96%)
Strand = Plus / Plus
Query: 49 tttttctattcagctaaaagtaacatgttgacatcatccaatataattaaactgaaccta 108
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 19 tttttctattcagctaaaagtaacatgttgacatcatccaatataactaaactgaaccta 78
Query: 109 ttgataacaagttcattttagctatattggatgatgtcaacaagttacttttaactgaat 168
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct: 79 ttgataacaagttcattttagctatgttggatgatgtcaataagttacttttaactaaat 138
Query: 169 agaaaaagccaaa 181
| |||||||||||
Sbjct: 139 aaaaaaagccaaa 151
Score = 105 bits (53), Expect = 1e-23
Identities = 113/133 (84%)
Strand = Plus / Minus
Query: 43 tttggctttttctattcagctaaaagtaacatgttgacatcatccaatataattaaactg 102
||||||||||| |||| || |||||||||| | |||||||||||||| ||| |||| ||
Sbjct: 151 tttggctttttttatttagttaaaagtaacttattgacatcatccaacatagctaaaatg 92
Query: 103 aacctattgataacaagttcattttagctatattggatgatgtcaacaagttacttttaa 162
||| | || || | ||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct: 91 aacttgttatcaataggttcagtttagttatattggatgatgtcaacatgttacttttag 32
Query: 163 ctgaatagaaaaa 175
|||||||||||||
Sbjct: 31 ctgaatagaaaaa 19
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 202 agccaaaaaacaaacaccac 221
||||||||||||||||||||
Sbjct: 145 agccaaaaaacaaacaccac 164
>41712_vvi-MIR3631c:mirbase
Length = 335
Score = 155 bits (78), Expect = 2e-38
Identities = 123/138 (89%)
Strand = Plus / Plus
Query: 37 aaaatatttggctttttctattcagctaaaagtaacatgttgacatcatccaatataatt 96
|||||||||| |||||| |||| || |||||||||||||||||||||||||||||||| |
Sbjct: 100 aaaatatttgactttttatatttagttaaaagtaacatgttgacatcatccaatataact 159
Query: 97 aaactgaacctattgataacaagttcattttagctatattggatgatgtcaacaagttac 156
||||| ||| |||| |||| ||||||| |||| |||||||||||| ||||||||||||
Sbjct: 160 aaactcaacatattaataataagttcactttaatcatattggatgatatcaacaagttac 219
Query: 157 ttttaactgaatagaaaa 174
||||||||||||| ||||
Sbjct: 220 ttttaactgaataaaaaa 237
Score = 153 bits (77), Expect = 7e-38
Identities = 190/225 (84%), Gaps = 2/225 (0%)
Strand = Plus / Minus
Query: 1 aggtggtgtttggtctttggttgaat-agaaaaagtcaaaatatttggct-ttttctatt 58
||||||| |||| | |||| |||||| ||||||| ||||||||||| | |||| ||||
Sbjct: 288 aggtggtatttgttttttgattgaattagaaaaaatcaaaatattttagtattttttatt 229
Query: 59 cagctaaaagtaacatgttgacatcatccaatataattaaactgaacctattgataacaa 118
||| |||||||||| |||||| |||||||||||| |||||| ||||| |||| ||| |
Sbjct: 228 cagttaaaagtaacttgttgatatcatccaatatgattaaagtgaacttattattaatat 169
Query: 119 gttcattttagctatattggatgatgtcaacaagttacttttaactgaatagaaaaagcc 178
||| | ||||| |||||||||||||||||||| ||||||||||||| |||| |||||| |
Sbjct: 168 gttgagtttagttatattggatgatgtcaacatgttacttttaactaaatataaaaagtc 109
Query: 179 aaatattttggctttttctatttagccaaaaaacaaacaccacct 223
||||||||| | |||| |||| || ||||||| |||||||||||
Sbjct: 108 aaatattttagtcttttatattcagacaaaaaaaaaacaccacct 64
>41713_vvi-MIR3631d:mirbase
Length = 250
Score = 111 bits (56), Expect = 2e-25
Identities = 99/113 (87%), Gaps = 4/113 (3%)
Strand = Plus / Plus
Query: 49 tttttctattcagctaaaagtaacatgttgacatcatccaatataattaaactgaaccta 108
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 142 tttttctattcagataaaagtaacatgttgacatcatccaatataattaaactgaacat- 200
Query: 109 ttgataacaagttcattttagctatattggatgatgtcaacaagttactttta 161
||||||||||||||||| ||| |||||| || |||| | |||||||||
Sbjct: 201 ---ataacaagttcattttaattatgttggataatatcaatagattactttta 250
Score = 73.8 bits (37), Expect = 5e-14
Identities = 43/45 (95%)
Strand = Plus / Minus
Query: 131 tatattggatgatgtcaacaagttacttttaactgaatagaaaaa 175
|||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 186 tatattggatgatgtcaacatgttacttttatctgaatagaaaaa 142