miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41711_vvi-MIR3631b:mirbase
Length = 164
Score = 109 bits (55), Expect = 1e-24
Identities = 95/108 (87%), Gaps = 4/108 (3%)
Strand = Plus / Plus
Query: 147 ctattcagataaaagtaacatgttgacatcatccaatataattaaactgaacat----at 202
|||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct: 24 ctattcagctaaaagtaacatgttgacatcatccaatataactaaactgaacctattgat 83
Query: 203 aacaagttcattttaattatgttggataatatcaatagattactttta 250
||||||||||||||| |||||||||| || |||||| |||||||||
Sbjct: 84 aacaagttcattttagctatgttggatgatgtcaataagttactttta 131
Score = 48.1 bits (24), Expect = 3e-06
Identities = 66/78 (84%), Gaps = 4/78 (5%)
Strand = Plus / Minus
Query: 1 taaaagtaacctattaatatcaaccaacataattaaaagtgaacttgttattatcaataa 60
|||||||||| |||| | |||| |||||||| ||||| |||||||||||| |||||
Sbjct: 131 taaaagtaacttattgacatcatccaacatagctaaaa-tgaacttgttat---caatag 76
Query: 61 gtttagtttagttatatt 78
||| ||||||||||||||
Sbjct: 75 gttcagtttagttatatt 58
>41710_vvi-MIR3631a:mirbase
Length = 223
Score = 101 bits (51), Expect = 3e-22
Identities = 94/108 (87%), Gaps = 4/108 (3%)
Strand = Plus / Plus
Query: 147 ctattcagataaaagtaacatgttgacatcatccaatataattaaactgaacat----at 202
|||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 54 ctattcagctaaaagtaacatgttgacatcatccaatataattaaactgaacctattgat 113
Query: 203 aacaagttcattttaattatgttggataatatcaatagattactttta 250
||||||||||||||| ||| |||||| || |||| | |||||||||
Sbjct: 114 aacaagttcattttagctatattggatgatgtcaacaagttactttta 161
Score = 63.9 bits (32), Expect = 6e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 147 ctattcagataaaagtaacatgttgacatcatccaatata 186
|||||||| |||||||||| ||||||||||||||||||||
Sbjct: 170 ctattcagttaaaagtaacttgttgacatcatccaatata 131
>41712_vvi-MIR3631c:mirbase
Length = 335
Score = 83.8 bits (42), Expect = 6e-17
Identities = 85/99 (85%), Gaps = 4/99 (4%)
Strand = Plus / Plus
Query: 156 taaaagtaacatgttgacatcatccaatataattaaactgaacat----ataacaagttc 211
|||||||||||||||||||||||||||||||| |||||| ||||| |||| ||||||
Sbjct: 126 taaaagtaacatgttgacatcatccaatataactaaactcaacatattaataataagttc 185
Query: 212 attttaattatgttggataatatcaatagattactttta 250
| |||||| || |||||| ||||||| | |||||||||
Sbjct: 186 actttaatcatattggatgatatcaacaagttactttta 224
Score = 61.9 bits (31), Expect = 2e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 148 tattcagataaaagtaacatgttgacatcatccaatataattaaactgaac 198
||||||| |||||||||| |||||| |||||||||||| |||||| |||||
Sbjct: 232 tattcagttaaaagtaacttgttgatatcatccaatatgattaaagtgaac 182
Score = 40.1 bits (20), Expect = 8e-04
Identities = 65/78 (83%), Gaps = 4/78 (5%)
Strand = Plus / Minus
Query: 1 taaaagtaacctattaatatcaaccaacataattaaaagtgaacttgttattatcaataa 60
|||||||||| | || |||||| |||| || |||||| |||||||| |||||| |||
Sbjct: 224 taaaagtaacttgttgatatcatccaatatgattaaa-gtgaacttattatta---atat 169
Query: 61 gtttagtttagttatatt 78
||| ||||||||||||||
Sbjct: 168 gttgagtttagttatatt 151
