miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>40468_gma-MIR390a:mirbase
          Length = 105

 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 65/77 (84%), Gaps = 5/77 (6%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagctcaggagggatagcgccatggcgggtcttg-----aatcttgatcttcatttgcgc 55
          |||||||||||||||||||||||||  | ||||      | |||||||||||  ||||||
Sbjct: 11 aagctcaggagggatagcgccatggatgatcttctcttcactcttgatcttctcttgcgc 70

                           
Query: 56 tatccatcctgagtttc 72
          |||||||||||||||||
Sbjct: 71 tatccatcctgagtttc 87




>40467_gma-MIR390a:mirbase
          Length = 105

 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 65/77 (84%), Gaps = 5/77 (6%)
 Strand = Plus / Plus

                                                                      
Query: 1  aagctcaggagggatagcgccatggcgggtcttg-----aatcttgatcttcatttgcgc 55
          |||||||||||||||||||||||||  | ||||      | |||||||||||  ||||||
Sbjct: 11 aagctcaggagggatagcgccatggatgatcttctcttcactcttgatcttctcttgcgc 70

                           
Query: 56 tatccatcctgagtttc 72
          |||||||||||||||||
Sbjct: 71 tatccatcctgagtttc 87




>40705_mtr-MIR390:mirbase
          Length = 100

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 39 ttgatcttcatttgcgctatccatcctgagtttc 72
          |||||||||  |||||||||||||||||||||||
Sbjct: 63 ttgatcttctcttgcgctatccatcctgagtttc 96



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  aagctcaggagggatagcgccat 23
          |||||||||||||||||||||||
Sbjct: 6  aagctcaggagggatagcgccat 28




>40073_ath-MIR390b:mirbase
          Length = 120

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 1  aagctcaggagggatagcgccatggc 26
          ||||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatggc 40



 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 52  gcgctatccatcctgagtt 70
           |||||||||||||||||||
Sbjct: 87  gcgctatccatcctgagtt 105




>41237_csi-MIR390:mirbase
          Length = 154

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  aagctcaggagggatagcgccatgg 25
          |||||||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgccatgg 45



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 52  gcgctatccatcctgagtttc 72
           |||||||||||||||||||||
Sbjct: 98  gcgctatccatcctgagtttc 118




>41130_tcc-MIR390a:mirbase
          Length = 129

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 40  tgatcttcatttgcgctatccatcctgagtttc 72
           ||||| ||||| |||||||||||||||||||||
Sbjct: 76  tgatcctcattagcgctatccatcctgagtttc 108



 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                  
Query: 1  aagctcaggagggatagcgccatggcgggtcttgaatctt 40
          ||||||||||||||||||||||| |  | |||||||||||
Sbjct: 21 aagctcaggagggatagcgccattgatgatcttgaatctt 60




>41053_ghr-MIR390c:mirbase
          Length = 114

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  aagctcaggagggatagcgccatgg 25
          |||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatgg 35



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 52  gcgctatccatcctgagtttc 72
           |||||||||||||||||||||
Sbjct: 87  gcgctatccatcctgagtttc 107




>41052_ghr-MIR390b:mirbase
          Length = 132

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  aagctcaggagggatagcgccatgg 25
          |||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatgg 42



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 52  gcgctatccatcctgagtttc 72
           |||||||||||||||||||||
Sbjct: 94  gcgctatccatcctgagtttc 114




>41051_ghr-MIR390a:mirbase
          Length = 124

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  aagctcaggagggatagcgccatgg 25
          |||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 52  gcgctatccatcctgagtttc 72
           |||||||||||||||||||||
Sbjct: 91  gcgctatccatcctgagtttc 111




>40372_rco-MIR390b:mirbase
          Length = 122

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  aagctcaggagggatagcgccatgg 25
          |||||||||||||||||||||||||
Sbjct: 6  aagctcaggagggatagcgccatgg 30



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 52  gcgctatccatcctgagtttc 72
           |||||||||||||||||||||
Sbjct: 96  gcgctatccatcctgagtttc 116




>41640_vvi-MIR390:mirbase
          Length = 140

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34




>41415_ptc-MIR390c:mirbase
          Length = 123

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34




>41413_ptc-MIR390a:mirbase
          Length = 119

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34




>40294_bna-MIR390c:mirbase
          Length = 128

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 23 aagctcaggagggatagcgccatg 46



 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 52  gcgctatccatcctgagtt 70
           |||||||||||||||||||
Sbjct: 85  gcgctatccatcctgagtt 103




>40292_bna-MIR390a:mirbase
          Length = 144

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 33 aagctcaggagggatagcgccatg 56



 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 52  gcgctatccatcctgagtt 70
           |||||||||||||||||||
Sbjct: 95  gcgctatccatcctgagtt 113




>40072_ath-MIR390a:mirbase
          Length = 107

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatg 41



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 52 gcgctatccatcctgagtttc 72
          |||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagtttc 89




>39863_aly-MIR390b:mirbase
          Length = 127

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccatg 42



 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 52  gcgctatccatcctgagtt 70
           |||||||||||||||||||
Sbjct: 91  gcgctatccatcctgagtt 109




>39862_aly-MIR390a:mirbase
          Length = 129

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  aagctcaggagggatagcgccatg 24
          ||||||||||||||||||||||||
Sbjct: 29 aagctcaggagggatagcgccatg 52



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 52  gcgctatccatcctgagtttc 72
           |||||||||||||||||||||
Sbjct: 80  gcgctatccatcctgagtttc 100




>41131_tcc-MIR390b:mirbase
          Length = 120

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  aagctcaggagggatagcgccat 23
          |||||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgccat 43




>40293_bna-MIR390b:mirbase
          Length = 105

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  aagctcaggagggatagcgccat 23
          |||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccat 40




>39485_ppt-MIR390a:mirbase
          Length = 137

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  aagctcaggagggatagcgccat 23
          |||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38




>42785_zma-MIR390b:mirbase
          Length = 192

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22




>42784_zma-MIR390a:mirbase
          Length = 181

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22




>42565_sbi-MIR390:mirbase
          Length = 179

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 3  aagctcaggagggatagcgcc 23




>41996_osa-MIR390:mirbase
          Length = 91

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39




>41773_bdi-MIR390b:mirbase
          Length = 186

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39




>41772_bdi-MIR390:mirbase
          Length = 209

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51




>41416_ptc-MIR390d:mirbase
          Length = 106

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 52 gcgctatccatcctgagttt 71
          ||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98




>41414_ptc-MIR390b:mirbase
          Length = 106

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 52 gcgctatccatcctgagtttc 72
          |||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagtttc 99




>40371_rco-MIR390a:mirbase
          Length = 108

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 6  aagctcaggagggatagcgcc 26



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 52  gcgctatccatcctgagtttc 72
           |||||||||||||||||||||
Sbjct: 82  gcgctatccatcctgagtttc 102




>39486_ppt-MIR390b:mirbase
          Length = 175

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aagctcaggagggatagcgcc 21
          |||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48




>39487_ppt-MIR390c:mirbase
          Length = 135

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 2  agctcaggagggatagcgcc 21
          ||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33