miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41252_csi-MIR408:mirbase
          Length = 153

 Score =  188 bits (95), Expect = 5e-49
 Identities = 98/99 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagacaaaagacggggaacaggcagagcatggatggaaccattaacaggttctctgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  gagacaaaagacggggaacaggcagagcatggatggaaccattaacaggttctctgtttt 109

                                                  
Query: 61  ggctcctcccatgcgctgcctcttccctggctctctgcc 99
           |||||||||||||| ||||||||||||||||||||||||
Sbjct: 110 ggctcctcccatgcactgcctcttccctggctctctgcc 148




>41463_ptc-MIR408:mirbase
          Length = 105

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 77/87 (88%), Gaps = 3/87 (3%)
 Strand = Plus / Plus

                                                                      
Query: 8  aagacggggaacaggcagagcatggatggaaccattaacag--gttctctgttttggctc 65
          |||||||||||||||||||||||||||||| | | ||||||  || || |||||||||||
Sbjct: 12 aagacggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctc 70

                                     
Query: 66 ctcccatgcgctgcctcttccctggct 92
            ||||||| |||||||||||||||||
Sbjct: 71 tacccatgcactgcctcttccctggct 97




>40108_ath-MIR408:mirbase
          Length = 218

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 52  ctctgttttggctcctcccatgcgctgcctcttccctggctc 93
           |||||||||| |||  ||||||| ||||||||||||||||||
Sbjct: 101 ctctgttttgtctctacccatgcactgcctcttccctggctc 142




>39897_aly-MIR408:mirbase
          Length = 211

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 52  ctctgttttggctcctcccatgcgctgcctcttccctggctc 93
           |||||||||| |||  ||||||| ||||||||||||||||||
Sbjct: 98  ctctgttttgtctctacccatgcactgcctcttccctggctc 139




>41683_vvi-MIR408:mirbase
          Length = 107

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 54  ctgttttggctcctcccatgcgctgcctcttccctggctct 94
           ||||||| ||||  ||||||| |||||||||||||||||||
Sbjct: 60  ctgtttttgctctacccatgcactgcctcttccctggctct 100



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                   
Query: 8  aagacggggaacaggcagagcatggatggaaccattaacag 48
          ||||||||||  ||| || ||||||||||||| ||||||||
Sbjct: 7  aagacggggacgaggtagtgcatggatggaactattaacag 47




>40391_rco-MIR408:mirbase
          Length = 92

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                  
Query: 53 tctgttttggctcctcccatgcgctgcctcttccctggct 92
          |||||||||||||  ||| ||| |||||||||||||||||
Sbjct: 49 tctgttttggctctacccctgcactgcctcttccctggct 88



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 7  aaagacggggaacaggcagagcatggatgg 36
          |||||| |||||||||||| ||||||||||
Sbjct: 1  aaagactgggaacaggcagtgcatggatgg 30




>40405_ahy-MIR408:mirbase
          Length = 122

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 70  catgcgctgcctcttccctggctctct 96
           ||||| |||||||||||||||||||||
Sbjct: 80  catgcactgcctcttccctggctctct 106



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 14 gggaacaggcagagcatggatggaac 39
          |||||||||||||||||| |||||||
Sbjct: 23 gggaacaggcagagcatgaatggaac 48




>40404_ahy-MIR408:mirbase
          Length = 122

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 70  catgcgctgcctcttccctggctctct 96
           ||||| |||||||||||||||||||||
Sbjct: 80  catgcactgcctcttccctggctctct 106



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 14 gggaacaggcagagcatggatggaac 39
          |||||||||||||||||| |||||||
Sbjct: 23 gggaacaggcagagcatgaatggaac 48




>42473_ssp-MIR408a:mirbase
          Length = 248

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 64  tcctcccatgcgctgcctcttccctggctc 93
           ||||||| ||| ||||||||||||||||||
Sbjct: 219 tcctcccctgcactgcctcttccctggctc 248




>42464_sof-MIR408c:mirbase
          Length = 286

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 64  tcctcccatgcgctgcctcttccctggctc 93
           ||||||| ||| ||||||||||||||||||
Sbjct: 240 tcctcccctgcactgcctcttccctggctc 269




>42463_sof-MIR408b:mirbase
          Length = 286

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 64  tcctcccatgcgctgcctcttccctggctc 93
           ||||||| ||| ||||||||||||||||||
Sbjct: 240 tcctcccctgcactgcctcttccctggctc 269




>42462_sof-MIR408a:mirbase
          Length = 283

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 64  tcctcccatgcgctgcctcttccctggctc 93
           ||||||| ||| ||||||||||||||||||
Sbjct: 237 tcctcccctgcactgcctcttccctggctc 266




>42830_zma-MIR408b:mirbase
          Length = 147

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 65  cctcccatgcgctgcctcttccctggctc 93
           |||||| ||| ||||||||||||||||||
Sbjct: 119 cctcccctgcactgcctcttccctggctc 147




>42829_zma-MIR408:mirbase
          Length = 191

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 65  cctcccatgcgctgcctcttccctggctc 93
           |||||| ||| ||||||||||||||||||
Sbjct: 146 cctcccctgcactgcctcttccctggctc 174




>42600_sbi-MIR408:mirbase
          Length = 205

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 64  tcctcccatgcgctgcctcttccctggct 92
           ||||||| ||| |||||||||||||||||
Sbjct: 177 tcctcccctgcactgcctcttccctggct 205




>42052_osa-MIR408:mirbase
          Length = 213

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 65  cctcccatgcgctgcctcttccctggctc 93
           |||||| ||| ||||||||||||||||||
Sbjct: 147 cctcccctgcactgcctcttccctggctc 175




>41193_aqc-MIR408:mirbase
          Length = 87

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 69 ccatgcgctgcctcttccctggct 92
          |||||| |||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1