miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41894_hvu-MIR444b:mirbase
Length = 121
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaagacccatagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaagacccatagat 53
Query: 61 tttgtaacttccttgaaagtaatgcagttgttgcctcatgctt 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 tttgtaacttccttgaaagtaatgcagttgttgcctcatgctt 10
>42089_osa-MIR444d:mirbase
Length = 143
Score = 71.9 bits (36), Expect = 9e-14
Identities = 87/103 (84%), Gaps = 2/103 (1%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaagacccatagat 60
||||||||| |||||||||||||||||||||||||| ||| | || | | | | |||
Sbjct: 123 aagcttgaggcagcaactgcacaacttgcaagaaagccacaagta--atcatctaatgat 66
Query: 61 tttgtaacttccttgaaagtaatgcagttgttgcctcatgctt 103
||||| ||| |||| |||||||||||||||||||||||||||
Sbjct: 65 tttgtgcctttcttgcaagtaatgcagttgttgcctcatgctt 23
>42088_osa-MIR444d:mirbase
Length = 143
Score = 71.9 bits (36), Expect = 9e-14
Identities = 87/103 (84%), Gaps = 2/103 (1%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaagacccatagat 60
||||||||| |||||||||||||||||||||||||| ||| | || | | | | |||
Sbjct: 123 aagcttgaggcagcaactgcacaacttgcaagaaagccacaagta--atcatctaatgat 66
Query: 61 tttgtaacttccttgaaagtaatgcagttgttgcctcatgctt 103
||||| ||| |||| |||||||||||||||||||||||||||
Sbjct: 65 tttgtgcctttcttgcaagtaatgcagttgttgcctcatgctt 23
>42087_osa-MIR444d:mirbase
Length = 143
Score = 71.9 bits (36), Expect = 9e-14
Identities = 87/103 (84%), Gaps = 2/103 (1%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaagacccatagat 60
||||||||| |||||||||||||||||||||||||| ||| | || | | | | |||
Sbjct: 123 aagcttgaggcagcaactgcacaacttgcaagaaagccacaagta--atcatctaatgat 66
Query: 61 tttgtaacttccttgaaagtaatgcagttgttgcctcatgctt 103
||||| ||| |||| |||||||||||||||||||||||||||
Sbjct: 65 tttgtgcctttcttgcaagtaatgcagttgttgcctcatgctt 23
>42479_ssp-MIR444b:mirbase
Length = 106
Score = 63.9 bits (32), Expect = 2e-11
Identities = 87/104 (83%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaagtcacgattatga-agacccataga 59
||||||||| || ||||||||||||||||||||||| ||| | ||||| | || ||
Sbjct: 105 aagcttgaggcaacaactgcacaacttgcaagaaagccacaagtatgatcctgcaattga 46
Query: 60 ttttgtaacttccttgaaagtaatgcagttgttgcctcatgctt 103
|||||| |||| |||| ||||||||||||| ||||||||||||
Sbjct: 45 ttttgtgactttcttgcaagtaatgcagttcctgcctcatgctt 2
Score = 40.1 bits (20), Expect = 3e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaagtcac 40
|||| |||| ||| ||||||| |||||||||||||||||
Sbjct: 2 aagcatgaggcaggaactgcattacttgcaagaaagtcac 41
>42480_ssp-MIR444c:mirbase
Length = 108
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaa 35
|||||||||||| ||||||||||||||||||||||
Sbjct: 102 aagcttgagacaacaactgcacaacttgcaagaaa 68
>42478_ssp-MIR444a:mirbase
Length = 105
Score = 61.9 bits (31), Expect = 8e-11
Identities = 85/103 (82%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaagtcacgattatgaagacccatagat 60
||||||||| || |||||||||||||||||||||| ||| | |||| | || |||
Sbjct: 104 aagcttgaggcaacaactgcacaacttgcaagaaaaccacaagtatgtcctgcaattgat 45
Query: 61 tttgtaacttccttgaaagtaatgcagttgttgcctcatgctt 103
||||| |||| |||| ||||||||||||| ||||||||||||
Sbjct: 44 tttgtgactttcttgcaagtaatgcagttcctgcctcatgctt 2
Score = 40.1 bits (20), Expect = 3e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaagtcac 40
|||| |||| ||| ||||||| |||||||||||||||||
Sbjct: 2 aagcatgaggcaggaactgcattacttgcaagaaagtcac 41
>42091_osa-MIR444f:mirbase
Length = 154
Score = 61.9 bits (31), Expect = 8e-11
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaagtca 39
||||||||| || ||||||||||||||||||||||||||
Sbjct: 144 aagcttgaggcaacaactgcacaacttgcaagaaagtca 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 71 ccttgaaagtaatgcagttgttgcctcatgctt 103
||||| ||||||||||||||| ||||||||||
Sbjct: 44 ccttgcaagtaatgcagttgtaacctcatgctt 12
>42084_osa-MIR444b:mirbase
Length = 138
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaa 35
|||||||||||| ||||||||||||||||||||||
Sbjct: 120 aagcttgagacaacaactgcacaacttgcaagaaa 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaa 35
||||||| | ||||||||||||| |||||||||||
Sbjct: 19 aagcttgtggcagcaactgcacatcttgcaagaaa 53
>42083_osa-MIR444b:mirbase
Length = 138
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaa 35
|||||||||||| ||||||||||||||||||||||
Sbjct: 120 aagcttgagacaacaactgcacaacttgcaagaaa 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaa 35
||||||| | ||||||||||||| |||||||||||
Sbjct: 19 aagcttgtggcagcaactgcacatcttgcaagaaa 53
>42649_tae-MIR444b:mirbase
Length = 162
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaag 36
||||||||| |||||||||||| |||||||||||||
Sbjct: 144 aagcttgaggcagcaactgcacgacttgcaagaaag 109
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 77 aagtaatgcagttgttgcctcatgct 102
||||||||||||||||||||||||||
Sbjct: 47 aagtaatgcagttgttgcctcatgct 22
>41893_hvu-MIR444a:mirbase
Length = 114
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaag 36
||||||||| |||||||||||| |||||||||||||
Sbjct: 107 aagcttgaggcagcaactgcacgacttgcaagaaag 72
>42086_osa-MIR444c:mirbase
Length = 138
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaa 35
|||||||||||| |||||||||| |||||||||||
Sbjct: 118 aagcttgagacaacaactgcacagcttgcaagaaa 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaa 35
||||| ||||||||||||||| | |||||||||||
Sbjct: 23 aagctagagacagcaactgcatatcttgcaagaaa 57
>42085_osa-MIR444c:mirbase
Length = 138
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaa 35
|||||||||||| |||||||||| |||||||||||
Sbjct: 118 aagcttgagacaacaactgcacagcttgcaagaaa 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaa 35
||||| ||||||||||||||| | |||||||||||
Sbjct: 23 aagctagagacagcaactgcatatcttgcaagaaa 57
>42648_tae-MIR444:mirbase
Length = 426
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 77 aagtaatgcagttgttgcctcatgct 102
||||||||||||||||||||||||||
Sbjct: 54 aagtaatgcagttgttgcctcatgct 29
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaaag 36
||||||||| ||||||||||| |||||||||||||
Sbjct: 168 aagcttgaggcagcaactgcatgacttgcaagaaag 133
>42082_osa-MIR444a:mirbase
Length = 131
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaa 34
||||||||| ||||||||||| ||||||||||||
Sbjct: 114 aagcttgaggcagcaactgcataacttgcaagaa 81
>42081_osa-MIR444a:mirbase
Length = 131
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgcaagaa 34
||||||||| ||||||||||| ||||||||||||
Sbjct: 114 aagcttgaggcagcaactgcataacttgcaagaa 81
>42090_osa-MIR444e:mirbase
Length = 140
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 aagcttgagacagcaactgcacaacttgc 29
||||||||| ||||||||||| |||||||
Sbjct: 119 aagcttgaggcagcaactgcataacttgc 91
