miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41995_osa-MIR319b:mirbase
          Length = 197

 Score =  343 bits (173), Expect = 3e-95
 Identities = 173/173 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14  gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 73

                                                                       
Query: 61  cccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtgaatgaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  cccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtgaatgaagc 133

                                                                
Query: 121 gggaggtaacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 173
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gggaggtaacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 186




>42781_zma-MIR319b:mirbase
          Length = 213

 Score =  174 bits (88), Expect = 1e-44
 Identities = 155/174 (89%), Gaps = 5/174 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 24  gagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactcattca 83

                                                                       
Query: 61  cccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtgaatgaagc 120
           |||||||||||||||  ||  ||    || | |  ||||| |||||||||||||||||||
Sbjct: 84  cccacatgccaagca--aacggccatggaaacc--agctttgcagatgagtgaatgaagc 139

                                                                 
Query: 121 gggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 173
           ||||||| || | | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 140 gggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctcc 193




>42783_zma-MIR319d:mirbase
          Length = 212

 Score =  167 bits (84), Expect = 3e-42
 Identities = 154/174 (88%), Gaps = 5/174 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 23  gagcgtccttcagtccactcaggggcggtgctagggtcggattagctgccgactcattca 82

                                                                       
Query: 61  cccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtgaatgaagc 120
           ||||||||||||||   |||||     |  | || ||||| |||||||||||||||||||
Sbjct: 83  cccacatgccaagc---aaacggccatggaaacg-agcttcgcagatgagtgaatgaagc 138

                                                                 
Query: 121 gggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 173
           ||||||| || | | ||||||||| |||||||||||||||||||||||||||||
Sbjct: 139 gggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctcc 192




>42563_sbi-MIR319:mirbase
          Length = 249

 Score =  165 bits (83), Expect = 1e-41
 Identities = 155/175 (88%), Gaps = 3/175 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 36  gagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactcattca 95

                                                                       
Query: 61  cccacatgccaagcaagaaacgcttgaga-tagcgaagcttagcagatgagtgaatgaag 119
           ||||||||||||||||    |  | || |  |||  ||||| ||||||||||||||||||
Sbjct: 96  cccacatgccaagcaaacggccatggaaacgagc-tagctttgcagatgagtgaatgaag 154

                                                                  
Query: 120 cgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtgctcc 173
           |||||||| || | | ||||||||| || ||||||||||||||||||||||||||
Sbjct: 155 cgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggtgctcc 209




>41636_vvi-MIR319c:mirbase
          Length = 182

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                               
Query: 8  cttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
          |||||||||||||||||| ||   |||| | ||||||||||||||||||||||
Sbjct: 20 cttcagtccactcatgggtggcagtaggattgaattagctgccgactcattca 72




>41404_ptc-MIR319a:mirbase
          Length = 188

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                               
Query: 8  cttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
          |||||||||||||||||| |||  |||| |  |||||||||||||||||||||
Sbjct: 20 cttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 72




>40367_rco-MIR319a:mirbase
          Length = 211

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                               
Query: 8  cttcagtccactcatgggcggtgctagggtcgaattagctgccgactcattca 60
          |||||||||||||||||| || | |||| |  |||||||||||||||||||||
Sbjct: 14 cttcagtccactcatgggtggcggtaggatttaattagctgccgactcattca 66




>41409_ptc-MIR319f:mirbase
          Length = 202

 Score = 46.1 bits (23), Expect = 9e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 34 gggtcgaattagctgccgactcattca 60
          |||| ||||||||||||||||||||||
Sbjct: 49 gggttgaattagctgccgactcattca 75




>40703_mtr-MIR319:mirbase
          Length = 207

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 148 tctttgcttggactgaagggtgctcc 173
           |||||||||||||||||||| |||||
Sbjct: 162 tctttgcttggactgaagggagctcc 187



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  gagcgtccttcagtccactcatgg 24
          |||| |||||||||||||||||||
Sbjct: 22 gagcttccttcagtccactcatgg 45




>40465_gma-MIR319b:mirbase
          Length = 208

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 40 aattagctgccgactcattcacccacatgc 69
          ||||||||||||||||||||| ||| ||||
Sbjct: 63 aattagctgccgactcattcatccaaatgc 92




>41407_ptc-MIR319d:mirbase
          Length = 193

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 52/61 (85%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  gagcgtccttcagtccactcatgggcggtgctaggg-tcgaattagctgccgactcattc 59
          |||| ||||||||||||||||||| |||    |||| | | |||||||||||||||||||
Sbjct: 13 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 72

           
Query: 60 a 60
          |
Sbjct: 73 a 73




>40464_gma-MIR319a:mirbase
          Length = 207

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 40 aattagctgccgactcattca 60
          |||||||||||||||||||||
Sbjct: 62 aattagctgccgactcattca 82



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 101 agcagatgagtgaatgaagcgggag 125
           ||||||||||||||||| |||||||
Sbjct: 117 agcagatgagtgaatgatgcgggag 141




>40369_rco-MIR319c:mirbase
          Length = 188

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 8  cttcagtccactcatgggcgg 28
          |||||||||||||||||||||
Sbjct: 14 cttcagtccactcatgggcgg 34




>41994_osa-MIR319a:mirbase
          Length = 191

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 142 gcgccgtctttgcttggactgaagggtgctcc 173
           ||||||| | || |||||||||||||||||||
Sbjct: 149 gcgccgtttgtggttggactgaagggtgctcc 180




>41638_vvi-MIR319f:mirbase
          Length = 193

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  gagcgtccttcagtccactcatgg 24
          |||| |||||||||||||||||||
Sbjct: 13 gagcttccttcagtccactcatgg 36



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 41 attagctgccgactcattca 60
          ||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73




>41406_ptc-MIR319c:mirbase
          Length = 196

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 41 attagctgccgactcattca 60
          ||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73