miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41242_csi-MIR396b:mirbase
          Length = 134

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                      
Query: 2  tatggtcctcttcgtcttattccacagctttcttgaactgcatc 45
          |||| ||||||| || || |||||||||||||||||||||||||
Sbjct: 1  tatgatcctctttgtatttttccacagctttcttgaactgcatc 44



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 107 gcggttcaataaagctgtgggatgatac 134
           |||||||||||||||||||||| |||||
Sbjct: 84  gcggttcaataaagctgtgggaagatac 111




>41794_bdi-MIR396d:mirbase
          Length = 152

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 21 ttccacagctttcttgaactgcatctg 47
          |||||||||||||||||||||||||||
Sbjct: 33 ttccacagctttcttgaactgcatctg 59




>40646_lja-MIR396:mirbase
          Length = 108

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 6  gtcctcttcgtcttattccacagctttcttgaactgcat 44
          |||||||| || || ||||||||||||||||||||||||
Sbjct: 1  gtcctctttgtattcttccacagctttcttgaactgcat 39



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 107 gcggttcaataaagctgtgggatgata 133
           |||||||||||||||||||||| ||||
Sbjct: 73  gcggttcaataaagctgtgggaagata 99




>42814_zma-MIR396h:mirbase
          Length = 124

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                    
Query: 21 ttccacagctttcttgaactgcatct 46
          ||||||||||||||||||||||||||
Sbjct: 98 ttccacagctttcttgaactgcatct 73




>42808_zma-MIR396b:mirbase
          Length = 136

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 21 ttccacagctttcttgaactgcatct 46
          ||||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcatct 46




>42583_sbi-MIR396b:mirbase
          Length = 128

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 21 ttccacagctttcttgaactgcatct 46
          ||||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcatct 46




>42472_ssp-MIR396:mirbase
          Length = 95

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 21 ttccacagctttcttgaactgcatct 46
          ||||||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatct 26




>42461_sof-MIR396:mirbase
          Length = 134

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 21 ttccacagctttcttgaactgcatct 46
          ||||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcatct 46




>42027_osa-MIR396b:mirbase
          Length = 116

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 21 ttccacagctttcttgaactgcatct 46
          ||||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcatct 36




>42813_zma-MIR396g:mirbase
          Length = 114

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 21  ttccacagctttcttgaactgcatc 45
           |||||||||||||||||||||||||
Sbjct: 111 ttccacagctttcttgaactgcatc 87




>41058_ghr-MIR396b:mirbase
          Length = 135

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 11 cttcgtcttattccacagctttcttgaactgca 43
          |||||| || |||||||||||||||||||||||
Sbjct: 1  cttcgtattcttccacagctttcttgaactgca 33



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 107 gcggttcaataaagctgtgggatgatac 134
           |||||||||||||||||||||| |||||
Sbjct: 104 gcggttcaataaagctgtgggaagatac 131




>41057_ghr-MIR396a:mirbase
          Length = 136

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 11 cttcgtcttattccacagctttcttgaactgca 43
          |||||| || |||||||||||||||||||||||
Sbjct: 1  cttcgtattcttccacagctttcttgaactgca 33



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 107 gcggttcaataaagctgtgggatgatac 134
           |||||||||||||||||||||| |||||
Sbjct: 104 gcggttcaataaagctgtgggaagatac 131




>40727_mtr-MIR396b:mirbase
          Length = 95

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 21 ttccacagctttcttgaactgcatc 45
          |||||||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaactgcatc 30



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 107 gcggttcaataaagctgtgggatgata 133
           |||||||||||||||||||||| ||||
Sbjct: 69  gcggttcaataaagctgtgggaagata 95




>40473_gma-MIR396a:mirbase
          Length = 140

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 21 ttccacagctttcttgaactgcatc 45
          |||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcatc 45



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 107 gcggttcaataaagctgtgggatgatactaataggatcaac 147
           |||||||||||||||||||||| |||||  ||||| |||||
Sbjct: 100 gcggttcaataaagctgtgggaagatacagatagggtcaac 140




>42807_zma-MIR396a:mirbase
          Length = 137

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 ttccacagctttcttgaactgcat 44
          ||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcat 44




>42582_sbi-MIR396a:mirbase
          Length = 125

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 ttccacagctttcttgaactgcat 44
          ||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcat 44




>41663_vvi-MIR396d:mirbase
          Length = 120

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 ttccacagctttcttgaactgcat 44
          ||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcat 34



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 107 gcggttcaataaagctgtgggatgatac 134
           |||||||||||||||||||||| |||||
Sbjct: 87  gcggttcaataaagctgtgggaagatac 114




>41436_ptc-MIR396b:mirbase
          Length = 132

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 107 gcggttcaataaagctgtgggatgatac 134
           |||||||||||||||||||||| |||||
Sbjct: 103 gcggttcaataaagctgtgggaagatac 130



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 ttccacagctttcttgaactgca 43
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>41435_ptc-MIR396a:mirbase
          Length = 123

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 107 gcggttcaataaagctgtgggatgatac 134
           |||||||||||||||||||||| |||||
Sbjct: 94  gcggttcaataaagctgtgggaagatac 121



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 ttccacagctttcttgaactgca 43
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>41188_aqc-MIR396a:mirbase
          Length = 122

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 ttccacagctttcttgaactgcat 44
          ||||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 107 gcggttcaataaagctgtggga 128
           ||||||||||||||||||||||
Sbjct: 99  gcggttcaataaagctgtggga 120




>41139_tcc-MIR396b:mirbase
          Length = 151

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                  
Query: 3  atggtcctcttcgtcttattccacagctttcttgaactgc 42
          |||| |||||| || || ||||||||||||||||||||||
Sbjct: 3  atggccctctttgtattcttccacagctttcttgaactgc 42



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 gttcaataaagctgtgggatgatac 134
           ||||||||||||||||||| |||||
Sbjct: 113 gttcaataaagctgtgggaagatac 137




>40085_ath-MIR396a:mirbase
          Length = 151

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 107 gcggttcaataaagctgtgggatgatac 134
           |||||||||||||||||||||| |||||
Sbjct: 120 gcggttcaataaagctgtgggaagatac 147



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 ttccacagctttcttgaactgca 43
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>39877_aly-MIR396a:mirbase
          Length = 172

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 107 gcggttcaataaagctgtgggatgatac 134
           |||||||||||||||||||||| |||||
Sbjct: 130 gcggttcaataaagctgtgggaagatac 157



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 ttccacagctttcttgaactgca 43
          |||||||||||||||||||||||
Sbjct: 24 ttccacagctttcttgaactgca 46




>42026_osa-MIR396a:mirbase
          Length = 154

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 ttccacagctttcttgaactgca 43
          |||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33




>41142_tcc-MIR396e:mirbase
          Length = 146

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 18 ttattccacagctttcttgaact 40
          |||||||||||||||||||||||
Sbjct: 18 ttattccacagctttcttgaact 40




>41793_bdi-MIR396c:mirbase
          Length = 153

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ttccacagctttcttgaactgc 42
          ||||||||||||||||||||||
Sbjct: 33 ttccacagctttcttgaactgc 54




>41662_vvi-MIR396c:mirbase
          Length = 108

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 ttccacagctttcttgaactg 41
          |||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactg 31




>41241_csi-MIR396a:mirbase
          Length = 153

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 ttccacagctttcttgaactg 41
          |||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactg 41




>41138_tcc-MIR396a:mirbase
          Length = 146

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 ttccacagctttcttgaactg 41
          |||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactg 41




>40477_gma-MIR396e:mirbase
          Length = 114

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 21 ttccacagctttcttgaactg 41
          |||||||||||||||||||||
Sbjct: 7  ttccacagctttcttgaactg 27




>42812_zma-MIR396f:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 2  ttccacagctttcttgaact 21




>42811_zma-MIR396e:mirbase
          Length = 166

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 2  ttccacagctttcttgaact 21




>42584_sbi-MIR396c:mirbase
          Length = 162

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>42028_osa-MIR396c:mirbase
          Length = 141

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41795_bdi-MIR396e:mirbase
          Length = 201

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 32 ttccacagctttcttgaact 51




>41661_vvi-MIR396b:mirbase
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33




>41660_vvi-MIR396a:mirbase
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33




>41439_ptc-MIR396e:mirbase
          Length = 145

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41438_ptc-MIR396d:mirbase
          Length = 154

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41437_ptc-MIR396c:mirbase
          Length = 102

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>41243_csi-MIR396c:mirbase
          Length = 178

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 13 ttccacagctttcttgaact 32




>41212_ccl-MIR396:mirbase
          Length = 277

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 21  ttccacagctttcttgaact 40
           ||||||||||||||||||||
Sbjct: 143 ttccacagctttcttgaact 162




>41189_aqc-MIR396b:mirbase
          Length = 89

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>41140_tcc-MIR396c:mirbase
          Length = 152

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>40726_mtr-MIR396a:mirbase
          Length = 93

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaact 25




>40476_gma-MIR396d:mirbase
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>40475_gma-MIR396c:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>40474_gma-MIR396b:mirbase
          Length = 126

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>40379_rco-MIR396:mirbase
          Length = 124

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaact 25




>40296_bna-MIR396a:mirbase
          Length = 117

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>40086_ath-MIR396b:mirbase
          Length = 135

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>39878_aly-MIR396b:mirbase
          Length = 188

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 32 ttccacagctttcttgaact 51




>39426_pta-MIR396:mirbase
          Length = 119

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36




>39379_pab-MIR396a:mirbase
          Length = 100

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 ttccacagctttcttgaact 40
          ||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35