miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41888_hvu-MIR168:mirbase
Length = 106
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttgcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 tcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttgcacc 82
Query: 61 aagtga 66
||||||
Sbjct: 83 aagtga 88
>41887_hvu-MIR168:mirbase
Length = 106
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttgcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 tcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttgcacc 82
Query: 61 aagtga 66
||||||
Sbjct: 83 aagtga 88
>41753_bdi-MIR168:mirbase
Length = 136
Score = 109 bits (55), Expect = 2e-25
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgcccg-ccccgacgggccggatcccgccttgcac 59
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 31 tcgcttggtgcagatcgggaccctccgcccgcccccgccgggccggatcccgccttgcac 90
Query: 60 caagtga 66
|||||||
Sbjct: 91 caagtga 97
>42741_zma-MIR168a:mirbase
Length = 104
Score = 91.7 bits (46), Expect = 5e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttgcacc 60
||||||||||||||||||||||| ||||||| || |||||| ||||||||||||||||||
Sbjct: 21 tcgcttggtgcagatcgggacccgccgcccggcc-gacgggacggatcccgccttgcacc 79
Query: 61 aagtga 66
||||||
Sbjct: 80 aagtga 85
>42470_ssp-MIR168a:mirbase
Length = 99
Score = 91.7 bits (46), Expect = 5e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttgcacc 60
||||||||||||||||||||||| ||||||| || |||||| ||||||||||||||||||
Sbjct: 18 tcgcttggtgcagatcgggacccgccgcccggcc-gacgggacggatcccgccttgcacc 76
Query: 61 aagtga 66
||||||
Sbjct: 77 aagtga 82
>42459_sof-MIR168a:mirbase
Length = 104
Score = 91.7 bits (46), Expect = 5e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttgcacc 60
||||||||||||||||||||||| ||||||| || |||||| ||||||||||||||||||
Sbjct: 21 tcgcttggtgcagatcgggacccgccgcccggcc-gacgggacggatcccgccttgcacc 79
Query: 61 aagtga 66
||||||
Sbjct: 80 aagtga 85
>42742_zma-MIR168b:mirbase
Length = 104
Score = 83.8 bits (42), Expect = 1e-17
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttgcacc 60
||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| |
Sbjct: 21 tcgcttggtgcagatcgggacccgccgcccg-gccgacgggacggatcccgccttgcatc 79
Query: 61 aagtga 66
||||||
Sbjct: 80 aagtga 85
>42460_sof-MIR168b:mirbase
Length = 103
Score = 75.8 bits (38), Expect = 3e-15
Identities = 61/66 (92%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttgcacc 60
|||||||| |||||||||||||| ||||||| || |||||| ||||||||||||||||||
Sbjct: 21 tcgcttgg-gcagatcgggacccgccgcccggcc-gacgggacggatcccgccttgcacc 78
Query: 61 aagtga 66
||||||
Sbjct: 79 aagtga 84
>41962_osa-MIR168a:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 2e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgcccgccccgac-gggccggatcccgccttgcac 59
||||||||||||||||||||||| ||||| | | | | |||||||||||||||||||||
Sbjct: 11 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 70
Query: 60 caagtga 66
|||||||
Sbjct: 71 caagtga 77
>41961_osa-MIR168a:mirbase
Length = 87
Score = 69.9 bits (35), Expect = 2e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgcccgccccgac-gggccggatcccgccttgcac 59
||||||||||||||||||||||| ||||| | | | | |||||||||||||||||||||
Sbjct: 11 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 70
Query: 60 caagtga 66
|||||||
Sbjct: 71 caagtga 77
>42528_sbi-MIR168:mirbase
Length = 106
Score = 61.9 bits (31), Expect = 5e-11
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcagatcgggaccctccgccc-gccccgacgggccggatcccgccttgcac 59
|||||||||||||||||||||| ||||| || | |||||| | |||||||||||||||
Sbjct: 21 tcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcccgccttgcac 80
Query: 60 caagtga 66
|||||||
Sbjct: 81 caagtga 87
