miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40430_gma-MIR156f:mirbase
          Length = 106

 Score =  115 bits (58), Expect = 5e-27
 Identities = 80/86 (93%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttgg 60
          |||||||||||||||||||||||||| |||||||| |||| |||||||||| ||||||||
Sbjct: 11 ttgacagaagagagagagcacaacccgggaatggttaaag-gagtctttgcctttgttgg 69

                                    
Query: 61 gagtgtgctctcccttcttctgtcat 86
          |||||||||||| |||| ||||||||
Sbjct: 70 gagtgtgctctctcttcctctgtcat 95




>40426_gma-MIR156b:mirbase
          Length = 120

 Score = 99.6 bits (50), Expect = 3e-22
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttgg 60
           |||||||||||||||||||||||||| |||||||  |||| |||||||||| ||||||||
Sbjct: 20  ttgacagaagagagagagcacaacccgggaatggctaaag-gagtctttgcctttgttgg 78

                                     
Query: 61  gagtgtgctctcccttcttctgtcat 86
           |||||||| ||| |||| ||||||||
Sbjct: 79  gagtgtgccctctcttcctctgtcat 104




>41080_tcc-MIR156a:mirbase
          Length = 124

 Score = 89.7 bits (45), Expect = 3e-19
 Identities = 75/85 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttgg 60
           |||||||||||||||||||||||||| | |   |  ||||| ||||||||||||||||||
Sbjct: 20  ttgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttgttgg 79

                                    
Query: 61  gagtgtgctctcccttcttctgtca 85
           ||||||||| || ||||||||||||
Sbjct: 80  gagtgtgctttctcttcttctgtca 104




>41298_ptc-MIR156k:mirbase
          Length = 101

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 74/84 (88%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttggg 61
          ||||||||||||| ||||||||||| | ||| |  |||||||||||||||||||||| ||
Sbjct: 11 tgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttgtt-gg 69

                                  
Query: 62 agtgtgctctcccttcttctgtca 85
          | |||||| || ||||||||||||
Sbjct: 70 actgtgctttctcttcttctgtca 93




>41204_aqc-MIR529:mirbase
          Length = 125

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttgg 60
          |||||||||||||||||||||||||||  |   |  ||||||||||||| ||||||||||
Sbjct: 17 ttgacagaagagagagagcacaacccatcatcagctaaagagagtcttttcttttgttgg 76

                     
Query: 61 gagtgtgctct 71
          |||||||||||
Sbjct: 77 gagtgtgctct 87




>40334_rco-MIR156e:mirbase
          Length = 95

 Score = 75.8 bits (38), Expect = 4e-15
 Identities = 75/86 (87%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttgg 60
          |||||||||||||||||||||||||| | | | |   || ||||||||||| ||||||||
Sbjct: 5  ttgacagaagagagagagcacaacccggcattaggctaa-agagtctttgcctttgttgg 63

                                    
Query: 61 gagtgtgctctcccttcttctgtcat 86
          |||||||||||| | |||||||||||
Sbjct: 64 gagtgtgctctctcctcttctgtcat 89




>41561_vvi-MIR156a:mirbase
          Length = 104

 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 74/86 (86%), Gaps = 2/86 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttgg 60
          |||||||||||||| ||||||||||||| |   |  |||||   ||||||||||| ||||
Sbjct: 10 ttgacagaagagagggagcacaacccagcatcagctaaagac--tctttgcttttcttgg 67

                                    
Query: 61 gagtgtgctctcccttcttctgtcat 86
          |||||||||||| |||||||||||||
Sbjct: 68 gagtgtgctctctcttcttctgtcat 93




>40396_ahy-MIR156c:mirbase
          Length = 139

 Score = 61.9 bits (31), Expect = 7e-11
 Identities = 75/87 (86%), Gaps = 2/87 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgacagaagagagagagcacaaccc-aggaatggtgaaagagagtctttgcttttgttg 59
           |||||||||||||||||||||||||| || |||||| ||||| |   ||| | |||||||
Sbjct: 21  ttgacagaagagagagagcacaacccgagaaatggtcaaaga-atcttttacctttgttg 79

                                      
Query: 60  ggagtgtgctctcccttcttctgtcat 86
           |||||||||||||   |||||||||||
Sbjct: 80  ggagtgtgctctctactcttctgtcat 106




>40393_ahy-MIR156a:mirbase
          Length = 116

 Score = 61.9 bits (31), Expect = 7e-11
 Identities = 75/87 (86%), Gaps = 2/87 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgacagaagagagagagcacaaccc-aggaatggtgaaagagagtctttgcttttgttg 59
           |||||||||||||||||||||||||| || |||||| ||||| |   ||| | |||||||
Sbjct: 17  ttgacagaagagagagagcacaacccgagaaatggtcaaaga-atcttttacctttgttg 75

                                      
Query: 60  ggagtgtgctctcccttcttctgtcat 86
           |||||||||||||   |||||||||||
Sbjct: 76  ggagtgtgctctctactcttctgtcat 102




>42687_zma-MIR156j:mirbase
          Length = 125

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 2  tgacagaagagagagagcacaacccag 28
          |||||||||||||||||||||||||||
Sbjct: 21 tgacagaagagagagagcacaacccag 47




>42488_sbi-MIR156d:mirbase
          Length = 125

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 2  tgacagaagagagagagcacaacccag 28
          |||||||||||||||||||||||||||
Sbjct: 21 tgacagaagagagagagcacaacccag 47




>41914_osa-MIR156k:mirbase
          Length = 106

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 2  tgacagaagagagagagcacaaccc 26
          |||||||||||||||||||||||||
Sbjct: 11 tgacagaagagagagagcacaaccc 35




>41877_far-MIR529:mirbase
          Length = 120

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  ttgacagaagagagagagcaca 22
          ||||||||||||||||||||||
Sbjct: 47 ttgacagaagagagagagcaca 68




>41867_far-MIR156b:mirbase
          Length = 180

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  ttgacagaagagagagagcaca 22
          ||||||||||||||||||||||
Sbjct: 53 ttgacagaagagagagagcaca 74




>41866_far-MIR156a:mirbase
          Length = 180

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  ttgacagaagagagagagcaca 22
          ||||||||||||||||||||||
Sbjct: 53 ttgacagaagagagagagcaca 74




>41726_bdi-MIR156:mirbase
          Length = 147

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 1   ttgacagaagagagagagcaca 22
           ||||||||||||||||||||||
Sbjct: 100 ttgacagaagagagagagcaca 121




>40648_mtr-MIR156:mirbase
          Length = 460

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 2  tgacagaagagagagagcaca 22
          |||||||||||||||||||||
Sbjct: 21 tgacagaagagagagagcaca 41




>40427_gma-MIR156c:mirbase
          Length = 185

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 1   ttgacagaagagagagagcacaacc 25
           ||||||||||| |||||||||||||
Sbjct: 146 ttgacagaagatagagagcacaacc 170




>40009_ath-MIR156h:mirbase
          Length = 106

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttgacagaagagagagagcacaacc 25
          ||||||||||| |||||||||||||
Sbjct: 11 ttgacagaagaaagagagcacaacc 35




>39797_aly-MIR156h:mirbase
          Length = 99

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttgacagaagagagagagcacaacc 25
          ||||||||||| |||||||||||||
Sbjct: 7  ttgacagaagaaagagagcacaacc 31




>41566_vvi-MIR156f:mirbase
          Length = 105

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  ttgacagaagagagagagcacaac 24
          ||||||||||| ||||||||||||
Sbjct: 11 ttgacagaagatagagagcacaac 34




>41085_tcc-MIR156f:mirbase
          Length = 124

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  ttgacagaagagagagagcacaac 24
          ||||||||||| ||||||||||||
Sbjct: 21 ttgacagaagatagagagcacaac 44




>40335_rco-MIR156f:mirbase
          Length = 97

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  ttgacagaagagagagagcacaac 24
          ||||||||||| ||||||||||||
Sbjct: 6  ttgacagaagatagagagcacaac 29




>39416_pta-MIR156b:mirbase
          Length = 83

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 2  tgacagaagagagagagcacaacc 25
          |||||||||| |||||||||||||
Sbjct: 3  tgacagaagatagagagcacaacc 26




>41568_vvi-MIR156h:mirbase
          Length = 228

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 2  tgacagaagagagagagca 20
          |||||||||||||||||||
Sbjct: 11 tgacagaagagagagagca 29




>40431_gma-MIR156g:mirbase
          Length = 118

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 1   ttgacagaagagagagagcacaa 23
           ||||||||||| |||||||||||
Sbjct: 107 ttgacagaagatagagagcacaa 85




>40395_ahy-MIR156b:mirbase
          Length = 135

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 1  ttgacagaagagagagagcacaa 23
          ||||||||||| |||||||||||
Sbjct: 23 ttgacagaagatagagagcacaa 45




>40394_ahy-MIR156b:mirbase
          Length = 135

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 1  ttgacagaagagagagagcacaa 23
          ||||||||||| |||||||||||
Sbjct: 23 ttgacagaagatagagagcacaa 45




>39507_ppt-MIR529e:mirbase
          Length = 122

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 5  cagaagagagagagcacaaccca 27
          |||||||||||||||||| ||||
Sbjct: 95 cagaagagagagagcacagccca 73