miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40430_gma-MIR156f:mirbase
Length = 106
Score = 115 bits (58), Expect = 5e-27
Identities = 80/86 (93%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttgg 60
|||||||||||||||||||||||||| |||||||| |||| |||||||||| ||||||||
Sbjct: 11 ttgacagaagagagagagcacaacccgggaatggttaaag-gagtctttgcctttgttgg 69
Query: 61 gagtgtgctctcccttcttctgtcat 86
|||||||||||| |||| ||||||||
Sbjct: 70 gagtgtgctctctcttcctctgtcat 95
>40426_gma-MIR156b:mirbase
Length = 120
Score = 99.6 bits (50), Expect = 3e-22
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttgg 60
|||||||||||||||||||||||||| ||||||| |||| |||||||||| ||||||||
Sbjct: 20 ttgacagaagagagagagcacaacccgggaatggctaaag-gagtctttgcctttgttgg 78
Query: 61 gagtgtgctctcccttcttctgtcat 86
|||||||| ||| |||| ||||||||
Sbjct: 79 gagtgtgccctctcttcctctgtcat 104
>41080_tcc-MIR156a:mirbase
Length = 124
Score = 89.7 bits (45), Expect = 3e-19
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttgg 60
|||||||||||||||||||||||||| | | | ||||| ||||||||||||||||||
Sbjct: 20 ttgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttgttgg 79
Query: 61 gagtgtgctctcccttcttctgtca 85
||||||||| || ||||||||||||
Sbjct: 80 gagtgtgctttctcttcttctgtca 104
>41298_ptc-MIR156k:mirbase
Length = 101
Score = 79.8 bits (40), Expect = 3e-16
Identities = 74/84 (88%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 2 tgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttggg 61
||||||||||||| ||||||||||| | ||| | |||||||||||||||||||||| ||
Sbjct: 11 tgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttgtt-gg 69
Query: 62 agtgtgctctcccttcttctgtca 85
| |||||| || ||||||||||||
Sbjct: 70 actgtgctttctcttcttctgtca 93
>41204_aqc-MIR529:mirbase
Length = 125
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttgg 60
||||||||||||||||||||||||||| | | ||||||||||||| ||||||||||
Sbjct: 17 ttgacagaagagagagagcacaacccatcatcagctaaagagagtcttttcttttgttgg 76
Query: 61 gagtgtgctct 71
|||||||||||
Sbjct: 77 gagtgtgctct 87
>40334_rco-MIR156e:mirbase
Length = 95
Score = 75.8 bits (38), Expect = 4e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttgg 60
|||||||||||||||||||||||||| | | | | || ||||||||||| ||||||||
Sbjct: 5 ttgacagaagagagagagcacaacccggcattaggctaa-agagtctttgcctttgttgg 63
Query: 61 gagtgtgctctcccttcttctgtcat 86
|||||||||||| | |||||||||||
Sbjct: 64 gagtgtgctctctcctcttctgtcat 89
>41561_vvi-MIR156a:mirbase
Length = 104
Score = 69.9 bits (35), Expect = 3e-13
Identities = 74/86 (86%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaacccaggaatggtgaaagagagtctttgcttttgttgg 60
|||||||||||||| ||||||||||||| | | ||||| ||||||||||| ||||
Sbjct: 10 ttgacagaagagagggagcacaacccagcatcagctaaagac--tctttgcttttcttgg 67
Query: 61 gagtgtgctctcccttcttctgtcat 86
|||||||||||| |||||||||||||
Sbjct: 68 gagtgtgctctctcttcttctgtcat 93
>40396_ahy-MIR156c:mirbase
Length = 139
Score = 61.9 bits (31), Expect = 7e-11
Identities = 75/87 (86%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaaccc-aggaatggtgaaagagagtctttgcttttgttg 59
|||||||||||||||||||||||||| || |||||| ||||| | ||| | |||||||
Sbjct: 21 ttgacagaagagagagagcacaacccgagaaatggtcaaaga-atcttttacctttgttg 79
Query: 60 ggagtgtgctctcccttcttctgtcat 86
||||||||||||| |||||||||||
Sbjct: 80 ggagtgtgctctctactcttctgtcat 106
>40393_ahy-MIR156a:mirbase
Length = 116
Score = 61.9 bits (31), Expect = 7e-11
Identities = 75/87 (86%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaaccc-aggaatggtgaaagagagtctttgcttttgttg 59
|||||||||||||||||||||||||| || |||||| ||||| | ||| | |||||||
Sbjct: 17 ttgacagaagagagagagcacaacccgagaaatggtcaaaga-atcttttacctttgttg 75
Query: 60 ggagtgtgctctcccttcttctgtcat 86
||||||||||||| |||||||||||
Sbjct: 76 ggagtgtgctctctactcttctgtcat 102
>42687_zma-MIR156j:mirbase
Length = 125
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagagagagagcacaacccag 28
|||||||||||||||||||||||||||
Sbjct: 21 tgacagaagagagagagcacaacccag 47
>42488_sbi-MIR156d:mirbase
Length = 125
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagagagagagcacaacccag 28
|||||||||||||||||||||||||||
Sbjct: 21 tgacagaagagagagagcacaacccag 47
>41914_osa-MIR156k:mirbase
Length = 106
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagagagagagcacaaccc 26
|||||||||||||||||||||||||
Sbjct: 11 tgacagaagagagagagcacaaccc 35
>41877_far-MIR529:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcaca 22
||||||||||||||||||||||
Sbjct: 47 ttgacagaagagagagagcaca 68
>41867_far-MIR156b:mirbase
Length = 180
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcaca 22
||||||||||||||||||||||
Sbjct: 53 ttgacagaagagagagagcaca 74
>41866_far-MIR156a:mirbase
Length = 180
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcaca 22
||||||||||||||||||||||
Sbjct: 53 ttgacagaagagagagagcaca 74
>41726_bdi-MIR156:mirbase
Length = 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcaca 22
||||||||||||||||||||||
Sbjct: 100 ttgacagaagagagagagcaca 121
>40648_mtr-MIR156:mirbase
Length = 460
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagagagagagcaca 22
|||||||||||||||||||||
Sbjct: 21 tgacagaagagagagagcaca 41
>40427_gma-MIR156c:mirbase
Length = 185
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaacc 25
||||||||||| |||||||||||||
Sbjct: 146 ttgacagaagatagagagcacaacc 170
>40009_ath-MIR156h:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaacc 25
||||||||||| |||||||||||||
Sbjct: 11 ttgacagaagaaagagagcacaacc 35
>39797_aly-MIR156h:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaacc 25
||||||||||| |||||||||||||
Sbjct: 7 ttgacagaagaaagagagcacaacc 31
>41566_vvi-MIR156f:mirbase
Length = 105
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaac 24
||||||||||| ||||||||||||
Sbjct: 11 ttgacagaagatagagagcacaac 34
>41085_tcc-MIR156f:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaac 24
||||||||||| ||||||||||||
Sbjct: 21 ttgacagaagatagagagcacaac 44
>40335_rco-MIR156f:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaac 24
||||||||||| ||||||||||||
Sbjct: 6 ttgacagaagatagagagcacaac 29
>39416_pta-MIR156b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 2 tgacagaagagagagagcacaacc 25
|||||||||| |||||||||||||
Sbjct: 3 tgacagaagatagagagcacaacc 26
>41568_vvi-MIR156h:mirbase
Length = 228
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagagagagagca 20
|||||||||||||||||||
Sbjct: 11 tgacagaagagagagagca 29
>40431_gma-MIR156g:mirbase
Length = 118
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1 ttgacagaagagagagagcacaa 23
||||||||||| |||||||||||
Sbjct: 107 ttgacagaagatagagagcacaa 85
>40395_ahy-MIR156b:mirbase
Length = 135
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaa 23
||||||||||| |||||||||||
Sbjct: 23 ttgacagaagatagagagcacaa 45
>40394_ahy-MIR156b:mirbase
Length = 135
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 ttgacagaagagagagagcacaa 23
||||||||||| |||||||||||
Sbjct: 23 ttgacagaagatagagagcacaa 45
>39507_ppt-MIR529e:mirbase
Length = 122
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 5 cagaagagagagagcacaaccca 27
|||||||||||||||||| ||||
Sbjct: 95 cagaagagagagagcacagccca 73