miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>40777_mtr-MIR2118:mirbase
          Length = 159

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                           
Query: 1  gagcttgaggaagttatgggatatgggaggatcggtaaaacagatctaa 49
          |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 gagcttgaggaagttatgggatatgggaggatcggtaaaacagatctaa 74

>41030_pvu-MIR2118:mirbase
          Length = 125

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 58  ccgattccacccattcctattatttccttttgttc 92
           |||||||||||||||||||| ||||||||| ||||
Sbjct: 76  ccgattccacccattcctatgatttcctttggttc 110



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                    
Query: 1  gagcttgaggaagttatgggatatgggaggatcggtaaaaca 42
          |||||||||||||| |||||| ||||| || | |||||||||
Sbjct: 3  gagcttgaggaagtgatgggagatgggtgggttggtaaaaca 44

>40642_gso-MIR2218:mirbase
          Length = 111

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 58  ccgattccacccattcctattatttccttt 87
           |||||||||||||||||||| |||| ||||
Sbjct: 82  ccgattccacccattcctatgattttcttt 111