miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32750_rno-mir-144:mirbase
Length = 83
Score = 151 bits (76), Expect = 9e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 4 ccttggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ccttggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatga 63
Query: 64 tgtactagtctgggta 79
||||||||||||||||
Sbjct: 64 tgtactagtctgggta 79
>27749_mml-mir-144:mirbase
Length = 86
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 7 tggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgt 68
Query: 67 actagtc 73
|||||||
Sbjct: 69 actagtc 75
>28215_mne-mir-144:mirbase
Length = 86
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 7 tggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgt 68
Query: 67 actagtc 73
|||||||
Sbjct: 69 actagtc 75
>30848_ppy-mir-144:mirbase
Length = 86
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 7 tggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgt 66
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9 tggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgt 68
Query: 67 actagtctggg 77
|||||||||||
Sbjct: 69 actagtctggg 79
>31877_mmu-mir-144:mirbase
Length = 66
Score = 131 bits (66), Expect = 8e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 8 ggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgta 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgta 60
Query: 68 ctagtc 73
||||||
Sbjct: 61 ctagtc 66
>28464_hsa-mir-144:mirbase
Length = 86
Score = 125 bits (63), Expect = 5e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 7 tggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgt 66
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9 tggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgt 68
Query: 67 actagtc 73
|||||||
Sbjct: 69 actagtc 75
>30236_ptr-mir-144:mirbase
Length = 86
Score = 125 bits (63), Expect = 5e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 7 tggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgt 66
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9 tggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgt 68
Query: 67 actagtc 73
|||||||
Sbjct: 69 actagtc 75
>27044_eca-mir-144:mirbase
Length = 66
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 8 ggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgta 67
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgta 60
Query: 68 ctagtc 73
||||||
Sbjct: 61 ctagtc 66
>30099_ppa-mir-144:mirbase
Length = 86
Score = 119 bits (60), Expect = 3e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 7 tggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgt 66
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9 tggctgggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgt 68
Query: 67 acta 70
||||
Sbjct: 69 acta 72
>33230_bta-mir-144:mirbase
Length = 84
Score = 105 bits (53), Expect = 5e-24
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 10 ctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtact 69
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 10 ctgggatatcatcatatactgtaagtttgcaacgagacactacagtatagatgatgtact 69
Query: 70 agtctgggt 78
|||| ||||
Sbjct: 70 agtccgggt 78
>31501_oan-mir-144:mirbase
Length = 135
Score = 97.6 bits (49), Expect = 1e-21
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 7 tggctgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgt 66
|||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 44 tggcggggatatcatcgtatactgtaagtttgctatgagacactacagtatagatgatgt 103
Query: 67 actag 71
|||||
Sbjct: 104 actag 108
>25793_xtr-mir-144:mirbase
Length = 62
Score = 95.6 bits (48), Expect = 4e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 11 tgggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtacta 70
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 3 tgggatatcatcatatactgtaagtttgttttaagacactacagtatagatgatgtacta 62
>27392_mdo-mir-144:mirbase
Length = 85
Score = 91.7 bits (46), Expect = 7e-20
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 12 gggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtact 69
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 14 gggatatcatcgtatactgtaagtttgcaatgagacactacagtatagatgatgtact 71
>26718_cfa-mir-144:mirbase
Length = 60
Score = 85.7 bits (43), Expect = 4e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 13 ggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtactag 71
|||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 2 ggatatcatcatatactgtaagtttgcgacaagatactacagtatagatgatgtactag 60
>25964_gga-mir-144:mirbase
Length = 85
Score = 81.8 bits (41), Expect = 7e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 13 ggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtact 69
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
>26474_tgu-mir-144:mirbase
Length = 70
Score = 81.8 bits (41), Expect = 7e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 13 ggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtact 69
|||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 4 ggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtact 60
>34316_dre-mir-144:mirbase
Length = 89
Score = 69.9 bits (35), Expect = 2e-13
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 13 ggatatcatcatatactgtaagtttgtgat-gagacactacagtatagatgatgtacta 70
|||||||||| ||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct: 13 ggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgtacta 71
>34605_fru-mir-144:mirbase
Length = 73
Score = 61.9 bits (31), Expect = 6e-11
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 13 ggatatcatcatatactgtaagtttgtgat-gagacactacagtatagatgatgtacta 70
|||||||||| ||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 9 ggatatcatctaatactgtaagtttattaaagagacactacagtatagatgatgtacta 67
>34752_tni-mir-144:mirbase
Length = 74
Score = 61.9 bits (31), Expect = 6e-11
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 13 ggatatcatcatatactgtaagtttg-tgatgagacactacagtatagatgatgtacta 70
|||||||||| |||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct: 10 ggatatcatcttatactgtaagtttaataaagtgacactacagtatagatgatgtacta 68
