miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41298_ptc-MIR156k:mirbase
          Length = 101

 Score =  200 bits (101), Expect = 1e-52
 Identities = 101/101 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgcatgctgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttatgcatgctgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgc 60

                                                    
Query: 61  ttttgttggactgtgctttctcttcttctgtcaccaaccaa 101
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttttgttggactgtgctttctcttcttctgtcaccaaccaa 101




>41080_tcc-MIR156a:mirbase
          Length = 124

 Score =  103 bits (52), Expect = 2e-23
 Identities = 83/92 (90%), Gaps = 1/92 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   catgctgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttg 65
           |||| ||||||||||||| ||||||||||| | |  ||||||||| ||||||||||||||
Sbjct: 16  catgttgacagaagagagagagcacaacccggcatcagctaaagaaagtctttgcttttg 75

                                           
Query: 66  ttgg-actgtgctttctcttcttctgtcacca 96
           |||| | |||||||||||||||||||||||||
Sbjct: 76  ttgggagtgtgctttctcttcttctgtcacca 107




>41561_vvi-MIR156a:mirbase
          Length = 104

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 73/84 (86%), Gaps = 3/84 (3%)
 Strand = Plus / Plus

                                                                      
Query: 11 tgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttgtt-gg 69
          ||||||||||||||||||||||||| | |  ||||||  ||| ||||||||||| || ||
Sbjct: 11 tgacagaagagagggagcacaacccagcatcagctaa--agactctttgcttttcttggg 68

                                  
Query: 70 actgtgctttctcttcttctgtca 93
          | |||||| |||||||||||||||
Sbjct: 69 agtgtgctctctcttcttctgtca 92




>40430_gma-MIR156f:mirbase
          Length = 106

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 77/89 (86%), Gaps = 2/89 (2%)
 Strand = Plus / Plus

                                                                      
Query: 6  catgctgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttg 65
          |||| ||||||||||||| ||||||||||| | ||| | ||||| |||||||||| ||||
Sbjct: 7  catgttgacagaagagagagagcacaacccgggaatggttaaag-gagtctttgcctttg 65

                                       
Query: 66 tt-ggactgtgctttctcttcttctgtca 93
          || ||| |||||| ||||||| |||||||
Sbjct: 66 ttgggagtgtgctctctcttcctctgtca 94




>40426_gma-MIR156b:mirbase
          Length = 120

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 77/89 (86%), Gaps = 2/89 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   catgctgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttg 65
           |||| ||||||||||||| ||||||||||| | ||| ||||||| |||||||||| ||||
Sbjct: 16  catgttgacagaagagagagagcacaacccgggaatggctaaag-gagtctttgcctttg 74

                                        
Query: 66  tt-ggactgtgctttctcttcttctgtca 93
           || ||| |||||  ||||||| |||||||
Sbjct: 75  ttgggagtgtgccctctcttcctctgtca 103




>41204_aqc-MIR529:mirbase
          Length = 125

 Score = 61.9 bits (31), Expect = 8e-11
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                     
Query: 11 tgacagaagagagggagcacaaccctgtaatagctaaagagagtctttgcttttgttgg 69
          ||||||||||||| |||||||||||   |  ||||||||||||||||| ||||||||||
Sbjct: 18 tgacagaagagagagagcacaacccatcatcagctaaagagagtcttttcttttgttgg 76




>40334_rco-MIR156e:mirbase
          Length = 95

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 73/85 (85%), Gaps = 4/85 (4%)
 Strand = Plus / Plus

                                                                      
Query: 11 tgacagaagagagggagcacaaccctgtaata-gctaaagagagtctttgcttttgtt-g 68
          ||||||||||||| ||||||||||| | | || |||||  ||||||||||| |||||| |
Sbjct: 6  tgacagaagagagagagcacaacccggcattaggctaa--agagtctttgcctttgttgg 63

                                   
Query: 69 gactgtgctttctcttcttctgtca 93
          || |||||| |||| ||||||||||
Sbjct: 64 gagtgtgctctctcctcttctgtca 88




>42687_zma-MIR156j:mirbase
          Length = 125

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 11 tgacagaagagagggagcacaaccc 35
          ||||||||||||| |||||||||||
Sbjct: 21 tgacagaagagagagagcacaaccc 45




>42488_sbi-MIR156d:mirbase
          Length = 125

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 11 tgacagaagagagggagcacaaccc 35
          ||||||||||||| |||||||||||
Sbjct: 21 tgacagaagagagagagcacaaccc 45




>41914_osa-MIR156k:mirbase
          Length = 106

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 11 tgacagaagagagggagcacaaccc 35
          ||||||||||||| |||||||||||
Sbjct: 11 tgacagaagagagagagcacaaccc 35




>40396_ahy-MIR156c:mirbase
          Length = 139

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 11 tgacagaagagagggagcacaaccc 35
          ||||||||||||| |||||||||||
Sbjct: 22 tgacagaagagagagagcacaaccc 46




>40393_ahy-MIR156a:mirbase
          Length = 116

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 11 tgacagaagagagggagcacaaccc 35
          ||||||||||||| |||||||||||
Sbjct: 18 tgacagaagagagagagcacaaccc 42