miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41305_ptc-MIR160a:mirbase
Length = 102
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1 acatgggttatgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acatgggttatgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagat 60
Query: 61 tggctgttgccggtggcgtgcgaggagccaagcatactctct 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggctgttgccggtggcgtgcgaggagccaagcatactctct 102
>41308_ptc-MIR160d:mirbase
Length = 103
Score = 141 bits (71), Expect = 1e-34
Identities = 96/102 (94%), Gaps = 3/102 (2%)
Strand = Plus / Plus
Query: 3 atgggttatgcctggctccctgtatgccacaagcaaagaccaatctttt--gttttagat 60
||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||
Sbjct: 3 atgggttatgcctggctccctgtatgccaca-gcaaagaccaatctcttctgtcttagat 61
Query: 61 tggctgttgccggtggcgtgcgaggagccaagcatactctct 102
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 62 tggctgctgccggtggcgtgcgaggagccaagcatactctct 103
>40340_rco-MIR160b:mirbase
Length = 96
Score = 79.8 bits (40), Expect = 4e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 58 gattggctgttgccggtggcgtgcgaggagccaagcatactctc 101
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 53 gattggctattgccggtggcgtgcgaggagccaagcatactctc 96
>41575_vvi-MIR160c:mirbase
Length = 106
Score = 56.0 bits (28), Expect = 5e-09
Identities = 81/96 (84%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 3 atgggttatgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagattg 62
||||||| ||||||||||||||||||||||| | | |||||| || || | |||||
Sbjct: 3 atgggttgtgcctggctccctgtatgccacacgtagagaccactccctt-tcccggattg 61
Query: 63 gct-gttgccggtggcgtgcgaggagccaagcatac 97
||| |||| ||||||||||||||||||||||||||
Sbjct: 62 gctatttgcgggtggcgtgcgaggagccaagcatac 97
>42636_tae-MIR160:mirbase
Length = 148
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 atgggttatgcctggctccctgtatgccac 32
||||| ||||||||||||||||||||||||
Sbjct: 14 atgggatatgcctggctccctgtatgccac 43
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 tggcgtgcgaggagccaagcat 95
||||||||||||||||||||||
Sbjct: 91 tggcgtgcgaggagccaagcat 112
>41731_bdi-MIR160a:mirbase
Length = 175
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 atgggttatgcctggctccctgtatgccac 32
||||| ||||||||||||||||||||||||
Sbjct: 24 atgggatatgcctggctccctgtatgccac 53
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 tggcgtgcgaggagccaagcat 95
||||||||||||||||||||||
Sbjct: 122 tggcgtgcgaggagccaagcat 143
>40021_ath-MIR160c:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 gttatgcctggctccctgtatgccac 32
||||||||||||||||||||||||||
Sbjct: 1 gttatgcctggctccctgtatgccac 26
>39809_aly-MIR160c:mirbase
Length = 119
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 gttatgcctggctccctgtatgccac 32
||||||||||||||||||||||||||
Sbjct: 20 gttatgcctggctccctgtatgccac 45
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 68 tgccggtggcgtgcgaggagccaagcat 95
|||||||||||| | |||||||||||||
Sbjct: 77 tgccggtggcgtacaaggagccaagcat 104
>40020_ath-MIR160b:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccacaag 35
|||||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccacaag 29
>39808_aly-MIR160b:mirbase
Length = 125
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccacaag 35
|||||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccacaag 45
>42707_zma-MIR160g:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgccaca 33
||||||||||||||||||||||||
Sbjct: 1 atgcctggctccctgtatgccaca 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 ggtggcgtgcgaggagccaagcat 95
|||||||||| |||||||||||||
Sbjct: 61 ggtggcgtgcaaggagccaagcat 84
>42705_zma-MIR160e:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 7 tatgcctggctccctgtatgccac 30
>42704_zma-MIR160d:mirbase
Length = 142
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 19 tatgcctggctccctgtatgccac 42
>41926_osa-MIR160d:mirbase
Length = 142
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 6 tatgcctggctccctgtatgccac 29
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 tggcgtgcgaggagccaagcat 95
||||||||||||||||||||||
Sbjct: 117 tggcgtgcgaggagccaagcat 138
>41869_far-MIR160:mirbase
Length = 148
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgccaca 33
||||||||||||||||||||||||
Sbjct: 52 atgcctggctccctgtatgccaca 75
>42702_zma-MIR160b:mirbase
Length = 121
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccaca 43
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 ggtggcgtgcgaggagccaagcat 95
|||||||||| |||||||||||||
Sbjct: 79 ggtggcgtgcaaggagccaagcat 102
>42701_zma-MIR160a:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 10 tgcctggctccctgtatgccaca 32
>42497_sbi-MIR160b:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>42496_sbi-MIR160a:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>41923_osa-MIR160a:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 ggtggcgtgcgaggagccaagcat 95
|||||||||| |||||||||||||
Sbjct: 63 ggtggcgtgcaaggagccaagcat 86
>41733_bdi-MIR160c:mirbase
Length = 148
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 31 tgcctggctccctgtatgccaca 53
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 ggtggcgtgcgaggagccaagcat 95
|||||||||| |||||||||||||
Sbjct: 92 ggtggcgtgcaaggagccaagcat 115
>41732_bdi-MIR160b:mirbase
Length = 146
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 31 tgcctggctccctgtatgccaca 53
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 ggtggcgtgcgaggagccaagcat 95
|||||||||| |||||||||||||
Sbjct: 90 ggtggcgtgcaaggagccaagcat 113
>41577_vvi-MIR160e:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgcca 31
>41529_sly-MIR160a:mirbase
Length = 129
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 18 tatgcctggctccctgtatgcca 40
>41088_tcc-MIR160b:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 19 tatgcctggctccctgtatgcca 41
>40312_bra-MIR160a:mirbase
Length = 127
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 24 tatgcctggctccctgtatgcca 46
>40019_ath-MIR160a:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>39807_aly-MIR160a:mirbase
Length = 158
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 40 tatgcctggctccctgtatgcca 62
>39374_pab-MIR160a:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 14 tgcctggctccctgtatgccaca 36
>42706_zma-MIR160f:mirbase
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcc 30
||||||||||||||||||||||
Sbjct: 19 tatgcctggctccctgtatgcc 40
>42703_zma-MIR160c:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccac 28
>42677_ttu-MIR160:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 9 tgcctggctccctgtatgccac 30
>42500_sbi-MIR160e:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>42499_sbi-MIR160d:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 74 tggcgtgcgaggagccaagca 94
|||||||||||||||||||||
Sbjct: 80 tggcgtgcgaggagccaagca 100
>42498_sbi-MIR160c:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>41927_osa-MIR160e:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcc 30
||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgcc 30
>41925_osa-MIR160c:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccac 28
>41924_osa-MIR160b:mirbase
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 ggtggcgtgcgaggagccaagcat 95
|||||||||| |||||||||||||
Sbjct: 89 ggtggcgtgcaaggagccaagcat 112
>41734_bdi-MIR160d:mirbase
Length = 150
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 31 tgcctggctccctgtatgccac 52
>41576_vvi-MIR160d:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgcca 31
>39732_smo-MIR160b:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgccac 34
>39460_ppt-MIR160f:mirbase
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>39459_ppt-MIR160e:mirbase
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>39455_ppt-MIR160a:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>41307_ptc-MIR160c:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>41306_ptc-MIR160b:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>41219_csi-MIR160:mirbase
Length = 143
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 33 tgcctggctccctgtatgcca 53
>41166_aqc-MIR160b:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>40662_mtr-MIR160e:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>40661_mtr-MIR160d:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>40659_mtr-MIR160b:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>40658_mtr-MIR160:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>40436_gma-MIR160:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>40339_rco-MIR160a:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>39731_smo-MIR160a:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>39463_ppt-MIR160i:mirbase
Length = 139
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgccac 32
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>39375_pab-MIR160b:mirbase
Length = 116
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 20 tgcctggctccctgtatgcca 40
