miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41311_ptc-MIR160g:mirbase
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 gggatcaatctgcctggctccctggatgccaactaagaaatttgtcgagtggtcttgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggatcaatctgcctggctccctggatgccaactaagaaatttgtcgagtggtcttgact 60
Query: 61 cttcatagttggcatcagaggagtcatgcaggtccaac 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttcatagttggcatcagaggagtcatgcaggtccaac 98
>41089_tcc-MIR160c:mirbase
Length = 120
Score = 75.8 bits (38), Expect = 5e-15
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 8 atctgcctggctccctggatgccaactaagaaatttgtcgagtggtcttgactcttcata 67
|||||||||||||||||||||||||||||| | |||||| | ||| | |||| ||
Sbjct: 18 atctgcctggctccctggatgccaactaaggatgctgtcgacaaggattggcccttccta 77
Query: 68 gttggcatcagaggagtcatgcaggtccaa 97
||||||||||||||||||| ||||||||||
Sbjct: 78 gttggcatcagaggagtcaagcaggtccaa 107
>41573_vvi-MIR160a:mirbase
Length = 103
Score = 71.9 bits (36), Expect = 8e-14
Identities = 76/87 (87%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 8 atctgcctggctccctggatgccaactaagaaatttgtcgagtggtcttga--ctcttca 65
||||||||||||||||| |||||| ||||||| ||||| || | | |||| ||||||
Sbjct: 8 atctgcctggctccctgaatgccatctaagaagcttgtcaag-gttgttgactctcttcc 66
Query: 66 tagttggcatcagaggagtcatgcagg 92
|||||||||||||||||||||||||||
Sbjct: 67 tagttggcatcagaggagtcatgcagg 93
>41165_aqc-MIR160a:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctggatgccaactaagaa 39
||||||||||||||||||||| |||||||
Sbjct: 1 tgcctggctccctggatgccatctaagaa 29
>40341_rco-MIR160c:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 atctgcctggctccctggatgccaactaagaa 39
||||||||||||||||| |||||| |||||||
Sbjct: 3 atctgcctggctccctgaatgccatctaagaa 34
>41574_vvi-MIR160b:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tctgcctggctccctggatgccaactaagaa 39
|||||||||||||||| |||||| |||||||
Sbjct: 9 tctgcctggctccctgaatgccatctaagaa 39
>41087_tcc-MIR160a:mirbase
Length = 122
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tctgcctggctccctggatgccaactaagaa 39
|||||||||||||||| |||||| |||||||
Sbjct: 19 tctgcctggctccctgaatgccatctaagaa 49
>39731_smo-MIR160a:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 atcaatctgcctggctccctggatgcca 31
|||| |||||||||||||||| ||||||
Sbjct: 4 atcactctgcctggctccctgtatgcca 31
>39375_pab-MIR160b:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 atctgcctggctccctggatgcca 31
||||||||||||||||| ||||||
Sbjct: 17 atctgcctggctccctgtatgcca 40
