miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>41313_ptc-MIR162a:mirbase
          Length = 107

 Score =  212 bits (107), Expect = 4e-56
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgggaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagca 60

                                                          
Query: 61  cgaaaaacatgaaccgatcgataaacctctgcatccagcgcttcctt 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgaaaaacatgaaccgatcgataaacctctgcatccagcgcttcctt 107




>41315_ptc-MIR162c:mirbase
          Length = 107

 Score =  123 bits (62), Expect = 3e-29
 Identities = 92/102 (90%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 63
           ||||||||||||||||||||||||||||||| ||||||   | ||||||||||  |||||
Sbjct: 4   gaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacga 63

                                                     
Query: 64  aaaacatgaaccgatcgataaacctctgcatccagcgcttcc 105
           | |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 64  acaacacgaaccgatcgataaacctctgcatccagtgcttcc 105




>41314_ptc-MIR162b:mirbase
          Length = 107

 Score =  123 bits (62), Expect = 3e-29
 Identities = 92/102 (90%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 63
           ||||||||||||||||||||||||||||||| ||||||   | ||||||||||  |||||
Sbjct: 4   gaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacga 63

                                                     
Query: 64  aaaacatgaaccgatcgataaacctctgcatccagcgcttcc 105
           | |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 64  acaacacgaaccgatcgataaacctctgcatccagtgcttcc 105




>41046_ghr-MIR162a:mirbase
          Length = 148

 Score = 79.8 bits (40), Expect = 4e-16
 Identities = 87/101 (86%), Gaps = 5/101 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   aagacactggaggcagcggttcatcgatctcttcctggccaattttttgt----ttagca 60
           |||||||||||||||||||||||||||||||||||||   | ||| ||||     || ||
Sbjct: 18  aagacactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataaca 77

                                                    
Query: 61  cgaaaaacatgaaccgatcgataaacctctgcatccagcgc 101
           | ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 78  c-aaatacatgaatcgatcgataaacctctgcatccagcgc 117




>41090_tcc-MIR162:mirbase
          Length = 131

 Score = 75.8 bits (38), Expect = 6e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 5  aagacactggaggcagcggttcatcgatctcttcctgg 42
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 15 aagacactggaggcagcggttcatcgatctcttcctgg 52




>40437_gma-MIR162:mirbase
          Length = 102

 Score = 75.8 bits (38), Expect = 6e-15
 Identities = 84/99 (84%), Gaps = 4/99 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 63
           |||| ||||||| |||||||||||||||||||||||||    | |  ||||||| ||  |
Sbjct: 3   gaagtcactggatgcagcggttcatcgatctcttcctg----aatcgttgtttaacatca 58

                                                  
Query: 64  aaaacatgaaccgatcgataaacctctgcatccagcgct 102
            || |||||| ||||||||||||||||||||||||||||
Sbjct: 59  gaaccatgaatcgatcgataaacctctgcatccagcgct 97




>40342_rco-MIR162:mirbase
          Length = 101

 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 85/100 (85%), Gaps = 5/100 (5%)
 Strand = Plus / Plus

                                                                       
Query: 9   cactggaggcagcggttcatcgatctcttcctggccaatttt-ttgtttagcacgaaaaa 67
           ||||||||||||||||||||||||||||||||||   ||||| ||||  | ||  || ||
Sbjct: 2   cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 61

                                                   
Query: 68  ----catgaaccgatcgataaacctctgcatccagcgctt 103
               |||||| |||||||||||||||||||||||||||||
Sbjct: 62  aacgcatgaatcgatcgataaacctctgcatccagcgctt 101




>40329_cpa-MIR162a:mirbase
          Length = 109

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 9  cactggaggcagcggttcatcgatctcttcctgg 42
          ||||||||||||||||||||||||||||||||||
Sbjct: 11 cactggaggcagcggttcatcgatctcttcctgg 44




>39813_aly-MIR162b:mirbase
          Length = 184

 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 63  aaaaacatgaaccgatcgataaacctctgcatccagcgctt 103
           |||| |||||| |||||||||||||||||||||||||||||
Sbjct: 98  aaaagcatgaatcgatcgataaacctctgcatccagcgctt 138




>41220_csi-MIR162:mirbase
          Length = 201

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 67  acatgaaccgatcgataaacctctgcatccagcgct 102
           ||||||| ||||||||||||||||||||||||||||
Sbjct: 150 acatgaatcgatcgataaacctctgcatccagcgct 185




>39812_aly-MIR162a:mirbase
          Length = 228

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 11 ctggaggcagcggttcatcgatctcttcctgg 42
          ||||||||||||||||||||||||||||||||
Sbjct: 68 ctggaggcagcggttcatcgatctcttcctgg 99



 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 63  aaaaacatgaaccgatcgataaacctctgcatccagcg 100
           |||| ||||||  |||||||||||||||||||||||||
Sbjct: 121 aaaagcatgaatagatcgataaacctctgcatccagcg 158




>40663_mtr-MIR162:mirbase
          Length = 124

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 81/96 (84%), Gaps = 5/96 (5%)
 Strand = Plus / Plus

                                                                       
Query: 9   cactggaggcagcggttcatcgatctcttcctggccaatttt--ttgtttagcacgaaaa 66
           ||||||| |||||||||||||||||| ||||||   ||||||  |||| | | |  | ||
Sbjct: 19  cactggatgcagcggttcatcgatctgttcctg---aattttgtttgtctcgtaaaacaa 75

                                               
Query: 67  acatgaaccgatcgataaacctctgcatccagcgct 102
           ||||||| || |||||||||||||||||||||||||
Sbjct: 76  acatgaatcggtcgataaacctctgcatccagcgct 111




>40024_ath-MIR162a:mirbase
          Length = 140

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 11 ctggaggcagcggttcatcgatctcttcctg 41
          |||||||||||||||||||||||||||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55



 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 63  aaaaacatgaaccgatcgataaacctctgcatccagcg 100
           |||| ||||||  |||||||||||||||||||||||||
Sbjct: 74  aaaagcatgaatagatcgataaacctctgcatccagcg 111




>41578_vvi-MIR162:mirbase
          Length = 103

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 4  gaagacactggaggcagcggttcatcgatctcttcctg 41
          |||| ||||||| |||||||||||||||||||||||||
Sbjct: 2  gaagtcactggatgcagcggttcatcgatctcttcctg 39



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 78  tcgataaacctctgcatccagcg 100
           |||||||||||||||||||||||
Sbjct: 73  tcgataaacctctgcatccagcg 95




>40025_ath-MIR162b:mirbase
          Length = 111

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 75  cgatcgataaacctctgcatccagcgct 102
           ||||||||||||||||||||||||||||
Sbjct: 76  cgatcgataaacctctgcatccagcgct 103



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 ctggaggcagcggttcatcgatc 33
          |||||||||||||||||||||||
Sbjct: 12 ctggaggcagcggttcatcgatc 34




>42502_sbi-MIR162:mirbase
          Length = 127

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 75  cgatcgataaacctctgcatccag 98
           ||||||||||||||||||||||||
Sbjct: 104 cgatcgataaacctctgcatccag 127




>41929_osa-MIR162a:mirbase
          Length = 171

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 75  cgatcgataaacctctgcatccag 98
           ||||||||||||||||||||||||
Sbjct: 140 cgatcgataaacctctgcatccag 163




>41736_bdi-MIR162:mirbase
          Length = 133

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 75  cgatcgataaacctctgcatcc 96
           ||||||||||||||||||||||
Sbjct: 108 cgatcgataaacctctgcatcc 129




>42708_zma-MIR162:mirbase
          Length = 130

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 78  tcgataaacctctgcatccag 98
           |||||||||||||||||||||
Sbjct: 110 tcgataaacctctgcatccag 130




>41530_sly-MIR162:mirbase
          Length = 99

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 78 tcgataaacctctgcatccag 98
          |||||||||||||||||||||
Sbjct: 79 tcgataaacctctgcatccag 99




>41930_osa-MIR162b:mirbase
          Length = 134

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 75  cgatcgataaacctctgcatccag 98
           |||||||||| |||||||||||||
Sbjct: 101 cgatcgataagcctctgcatccag 124